View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19620_low_13 (Length: 241)
Name: NF19620_low_13
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 50016143 - 50016369
Alignment:
| Q |
1 |
acaaagttgtttgttattttcttcatatgccatcgtggccgtaaccatgtggatgatgatataaagaattagtaactgatccaagattttatgcattct- |
99 |
Q |
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| T |
50016143 |
acaaagttgtttgttattttcttcatatgccatcgtggccgtaaccatgtggatgatgatataaagaattagtaactgatccaagattttatgcattctc |
50016242 |
T |
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| Q |
100 |
--gacaggtttggatcctttgcaatgattgtggcgaaaattctcacgtccagtttcatcttgttgcacaaaagtgcttgaactgcaaatcttataacaca |
197 |
Q |
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| T |
50016243 |
ttgacaggtttggatcctttgcaatgattgtggcgaaaattctcacgtccagtttcatcttgttgcacaaaagtgcttgaactgcatatcttataacaca |
50016342 |
T |
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| Q |
198 |
agacaaaccagaggctgaacacgtggt |
224 |
Q |
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| T |
50016343 |
agacaaaccagaggctgaacacgtggt |
50016369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 1778972 - 1778857
Alignment:
| Q |
102 |
caggtttggatcctttgcaatgattgtggcgaaaattctcacgtccagtttcatcttgttgcacaaaagtgcttgaactgcaaatcttataacacaagac |
201 |
Q |
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| T |
1778972 |
caggtttggatcctgtgcaatgattgtggaaaaacctctaatgtccggttccattttgtagcgcaaaaatgcctcaactgcaattcctacaacacacgac |
1778873 |
T |
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| Q |
202 |
aaaccagaggctgaac |
217 |
Q |
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| T |
1778872 |
aaacacgaggctgaac |
1778857 |
T |
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