View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19620_low_3 (Length: 523)

Name: NF19620_low_3
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19620_low_3
NF19620_low_3
[»] chr6 (2 HSPs)
chr6 (16-371)||(17498641-17498993)
chr6 (402-516)||(17498471-17498585)
[»] chr1 (4 HSPs)
chr1 (161-244)||(45086965-45087048)
chr1 (461-509)||(45087119-45087167)
chr1 (333-371)||(12213547-12213585)
chr1 (321-358)||(35310303-35310340)
[»] chr8 (4 HSPs)
chr8 (336-371)||(33057670-33057705)
chr8 (334-371)||(8587189-8587226)
chr8 (329-373)||(5799619-5799663)
chr8 (314-350)||(9597258-9597294)
[»] chr7 (2 HSPs)
chr7 (336-373)||(46877666-46877703)
chr7 (311-359)||(6803328-6803376)
[»] chr2 (3 HSPs)
chr2 (334-371)||(4553084-4553121)
chr2 (322-355)||(4592464-4592497)
chr2 (336-373)||(16734800-16734837)
[»] chr4 (2 HSPs)
chr4 (322-354)||(24788662-24788694)
chr4 (322-354)||(24819566-24819598)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 17498993 - 17498641
Alignment:
Q  16 agatccaaaacgtgatacacaaatggaaattgaagaagaaaaatcaaccactcttcaagagaataattatattattcctcaagttgtgtcactaaaaatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17498993 agatccaaaacgtgatacacaaatggaaattgaagaagaaaaatcaacaactcttcaagagaataattatattattcctcaagttgtgtcactaaaaatg 17498894  T
Q  116 gcagagaaattagctaggaaaaaatcagagaggtttacgtatcttgttgcagctgttatgtctagccttggtataacatctatggctgtcttgtctgttt 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17498893 gcagagaaattagctaggaaaaaatcagagaggtttacttatcttgttgcagctgttatgtctagccttggtataacatctatggctgtgttgtctgttt 17498794  T
Q  216 atttaagattttcatggcaaatggaggtaagtgttgtgatggttccttaaattttttcgctccggttttatatataagaaaaagtttggtcaatagtatt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||| ||| |    
T  17498793 atttaagattttcatggcaaatggaggtaagtgttgtgatggttccttaaat-ttttcgctcgggttctatatttaagagaaagtttggtcaatggta-t 17498696  T
Q  316 tggtctaaatttaaaattaaatacattaatttttgttgaccaaactttctcttata 371  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  17498695 tggtctaaatttaaaatt-aataaatcaatttttgttgaccaaactttctcttata 17498641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 402 - 516
Target Start/End: Complemental strand, 17498585 - 17498471
Alignment:
Q  402 ctatgcacattggtattttgttgtgaaaat-tgaatctgaaattgggtttggtttgtttaaggggagtggagaaattccttggtctgaaatgtttggtac 500  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17498585 ctatgcacattggtattttgttatgaaaatctgaatctgaaattgggtttggtttgttta-gggaagtggagaaattccttggtctgaaatgtttggtac 17498487  T
Q  501 atttgctctatctgtg 516  Q
    ||||||||||||||||    
T  17498486 atttgctctatctgtg 17498471  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 45086965 - 45087048
Alignment:
Q  161 gttgcagctgttatgtctagccttggtataacatctatggctgtcttgtctgtttatttaagattttcatggcaaatggaggta 244  Q
    ||||||||||| ||||||||| ||||| | || ||||||||  ||||  |||||||||  ||||| ||||||||||||||||||    
T  45086965 gttgcagctgtaatgtctagctttggtgtcacttctatggcaatcttagctgtttattatagattctcatggcaaatggaggta 45087048  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 45087119 - 45087167
Alignment:
Q  461 aggggagtggagaaattccttggtctgaaatgtttggtacatttgctct 509  Q
    |||| ||||||||  |||||||||||||||||||||| |||||||||||    
T  45087119 agggtagtggagaggttccttggtctgaaatgtttggcacatttgctct 45087167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 12213547 - 12213585
Alignment:
Q  333 taaatacattaatttttgttgaccaaactttctcttata 371  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  12213547 taaatacattaatttttgttgacctaacattctcttata 12213585  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 35310303 - 35310340
Alignment:
Q  321 taaatttaaaattaaatacattaatttttgttgaccaa 358  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  35310303 taaattttaaatcaaatacattaatttttgttgaccaa 35310340  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Original strand, 33057670 - 33057705
Alignment:
Q  336 atacattaatttttgttgaccaaactttctcttata 371  Q
    |||||| |||||||||||||||||||||||||||||    
T  33057670 atacatcaatttttgttgaccaaactttctcttata 33057705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 8587226 - 8587189
Alignment:
Q  334 aaatacattaatttttgttgaccaaactttctcttata 371  Q
    |||||||| || ||||||||||||||||||||||||||    
T  8587226 aaatacatcaacttttgttgaccaaactttctcttata 8587189  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 5799619 - 5799663
Alignment:
Q  329 aaattaaatacattaatttttgttgaccaaactttctcttatata 373  Q
    |||| ||||||||||||||||||||||  |||||| |||||||||    
T  5799619 aaatcaaatacattaatttttgttgacgcaactttttcttatata 5799663  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 9597258 - 9597294
Alignment:
Q  314 tttggtctaaatttaaaattaaatacattaatttttg 350  Q
    ||||||||||||||||||||||||| || ||||||||    
T  9597258 tttggtctaaatttaaaattaaatatatcaatttttg 9597294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 46877666 - 46877703
Alignment:
Q  336 atacattaatttttgttgaccaaactttctcttatata 373  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  46877666 atacattaacttttgttgacccaactttctcttatata 46877703  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 6803376 - 6803328
Alignment:
Q  311 gtatttggtctaaatttaaaattaaatacattaatttttgttgaccaaa 359  Q
    |||||||||  |||||| ||| |||||||||||| ||||||||||||||    
T  6803376 gtatttggtacaaattttaaactaaatacattaacttttgttgaccaaa 6803328  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 4553084 - 4553121
Alignment:
Q  334 aaatacattaatttttgttgaccaaactttctcttata 371  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  4553084 aaatacatctatttttgttgaccaaactttctcttata 4553121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 4592497 - 4592464
Alignment:
Q  322 aaatttaaaattaaatacattaatttttgttgac 355  Q
    ||||||||||| ||||||||||||||||||||||    
T  4592497 aaatttaaaatcaaatacattaatttttgttgac 4592464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 16734837 - 16734800
Alignment:
Q  336 atacattaatttttgttgaccaaactttctcttatata 373  Q
    |||||| || ||||||||||||||||||||||||||||    
T  16734837 atacatcaacttttgttgaccaaactttctcttatata 16734800  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 24788694 - 24788662
Alignment:
Q  322 aaatttaaaattaaatacattaatttttgttga 354  Q
    |||||| ||||||||||||||||||||||||||    
T  24788694 aaatttcaaattaaatacattaatttttgttga 24788662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 24819566 - 24819598
Alignment:
Q  322 aaatttaaaattaaatacattaatttttgttga 354  Q
    |||||| ||||||||||||||||||||||||||    
T  24819566 aaatttcaaattaaatacattaatttttgttga 24819598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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