View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19620_low_4 (Length: 420)
Name: NF19620_low_4
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 1327896 - 1328285
Alignment:
| Q |
16 |
attagctgggttgtacatgccatttgatttcttaatcaatcaagctcaggaaattttgtagtggccaaaatttagatttcaagtatcttgtacaagcttt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1327896 |
attagctgggttgtacatgctatttgatttcttaatcaatcaagctcaggaaattttgtagtggccaaaatttagatttcaagtatcttgtacaagcttt |
1327995 |
T |
|
| Q |
116 |
tgaaatactatgtaatgacggtaatacagtattctctgtgagaggatagatatttggtgaaaaagagcatgtagatccttattaaataaaataaacagaa |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1327996 |
tgaaatactatgtactgacggtaatacagtactctctgtgagaggatagatatttggtgaaaaagagcatgtagatccttattaaataaaataaacagaa |
1328095 |
T |
|
| Q |
216 |
catttaaatttattattaactgcacaagtttaaggataagagtacatgtatgtcatggattagactattacaccgcaaatcacaattaacacgtgtgata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328096 |
catttaaatttattattaactgcacaagtttaaggataagagtacatgtatgtcatggattagactattacaccgcaaatcacaattaacacgtgtgata |
1328195 |
T |
|
| Q |
316 |
gagtagaccgataattggaattctttgctgattttgtatgtgtttggtttagcttttgtagtgttagacatacgtttagcatgtcatttt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1328196 |
gagtagaccgataattggaattctttgctgattttgtatgcgtttggtttagcttttctagtgttagacatacgtttagcatgtcatttt |
1328285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 44186756 - 44187079
Alignment:
| Q |
22 |
tgggttgtacatgccatttgatttcttaatcaatcaagctcaggaaattttgtagtggccaaaatttagatttcaagtatcttgtacaagcttttgaaat |
121 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
44186756 |
tgggttggacatgctatttgatttcttaatcaatcaagctcagaaaattttgtagtggtcaaaatttatatttcaagtatcttgcacaagcttttgaaat |
44186855 |
T |
|
| Q |
122 |
actatgtaatgacggtaatacagtattctctgtgagaggatagatatttggtgaaaaagagcatgtagatccttattaaataaaataaacagaacattta |
221 |
Q |
| |
|
||||||| |||| |||||||| ||| |||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
44186856 |
gctatgtactgacagtaatacactatgctctataataggatagatatttggtgaaaaagaacatgtagatccttattaaataaaatatacaaaagattta |
44186955 |
T |
|
| Q |
222 |
aatttattat-------taactgcacaagtttaaggataagagtacatgtatgtcatggattagactattacaccgcaaatcacaattaacacgtgtgat |
314 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| ||||||||||||||| ||| |||||||| ||| |||||| ||||||||||||| ||| |
|
|
| T |
44186956 |
aatttattatctgttgataactgcgcaattttaaggataaga-tacatgtatgtcatgaatttgactattataccccaaatcgcaattaacacgtgcgat |
44187054 |
T |
|
| Q |
315 |
agagtagaccgataattggaattct |
339 |
Q |
| |
|
|||||| | |||||||||||||||| |
|
|
| T |
44187055 |
agagtaaatcgataattggaattct |
44187079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 4878649 - 4878697
Alignment:
| Q |
16 |
attagctgggttgtacatgccatttgatttcttaatcaatcaagctcag |
64 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
4878649 |
attagctgggttgtacattctatttgatttcttaatcaatcaagctcag |
4878697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 4878723 - 4878813
Alignment:
| Q |
136 |
gtaatacagtattctctgtgagaggatagatatttggtgaaaaagagc----atgtagatccttattaaataaaataaacagaacatttaa |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||| ||| || || ||||||||| ||||||||| ||| ||| ||||| |
|
|
| T |
4878723 |
gtaatacagtatgctctgtgagaggatatatatttggtgaaaaaaagcacgtatatatatccttattgaataaaatatacaaaacttttaa |
4878813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University