View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19620_low_8 (Length: 281)
Name: NF19620_low_8
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 37129513 - 37129766
Alignment:
| Q |
15 |
ccgtaattttttaactctagatcttatgtgaactcaattcacataagcttaagttgtta--attcacgtagatattgtctataaaaattttgaatttnnn |
112 |
Q |
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| T |
37129513 |
ccgtaattttttaactctagatcttatgtgaactcaattcacataagcttaagttgtctggattcacgtaaatattgtctataaaatttttgaattaaaa |
37129612 |
T |
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| Q |
113 |
nnnngtatgtgaactaaagtcacataaactgacgtgaacgggttcaagtaattggtgaaaatcgaatttagattcattgcggttgaaatttcatgtagtc |
212 |
Q |
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| T |
37129613 |
aaaagtatgtgaactaaagtcacataaactgacgtgaacgggttcaagtaattggtgaaaatcgaatttagattcattgcggttgaaatttcatgtagtc |
37129712 |
T |
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| Q |
213 |
atggtagtcaaagaaataacaaccattcaatttatccaatgttctatattttgt |
266 |
Q |
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| T |
37129713 |
atagtagtcaaagaaataacaaccattcaatttatcaaatgttctatattttgt |
37129766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 37121534 - 37121662
Alignment:
| Q |
117 |
gtatgtgaactaaagtcacataaactgacgtgaacgggttcaagtaattggtgaaaatcgaatttagattcattgcggttgaaatttcatgtagtcatgg |
216 |
Q |
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| T |
37121534 |
gtatgtgaactaaagtcacataaaccgacgtggacgggttcacgtaattggtgaaaatcgaaataagtttcattgcagttgaaatttcatgcggtcacgg |
37121633 |
T |
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| Q |
217 |
tagtcaaagaaataacaaccattcaattt |
245 |
Q |
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| T |
37121634 |
tagtcaaagaaataacaaccatttaattt |
37121662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 37121429 - 37121463
Alignment:
| Q |
21 |
ttttttaactctagatcttatgtgaactcaattca |
55 |
Q |
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| T |
37121429 |
ttttttaactctagatcttacgtgaactcaattca |
37121463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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