View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19620_low_9 (Length: 277)

Name: NF19620_low_9
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19620_low_9
NF19620_low_9
[»] chr3 (12 HSPs)
chr3 (18-259)||(27956321-27956562)
chr3 (109-259)||(28041996-28042143)
chr3 (168-247)||(28477258-28477337)
chr3 (110-250)||(28042340-28042481)
chr3 (18-82)||(28477132-28477196)
chr3 (165-236)||(28124067-28124138)
chr3 (165-236)||(28138457-28138528)
chr3 (165-236)||(28139876-28139947)
chr3 (34-82)||(28140008-28140056)
chr3 (35-82)||(28138589-28138636)
chr3 (34-80)||(28124201-28124247)
chr3 (35-77)||(28042184-28042226)
[»] chr5 (1 HSPs)
chr5 (135-250)||(26027041-26027156)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 27956562 - 27956321
Alignment:
Q  18 gaatggacattactcagtagtataaagtaatgtttccattatttagaatctttacagctagctagctagttctcctatcgttttaagaatctataaagct 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  27956562 gaatggacattactcagtagtataaagcaatgtttccattatttagaatctttacagctagctacctagtcctcctatcgttttaagaatctataaagct 27956463  T
Q  118 tcaattattgattcgtctcactttgacatttctaataatccattaatttccaagtctaaagaaaaccaaccaacggtcataatttgttttgaagaacctt 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  27956462 tcaattattgattcgtatcactttgacatttctaataatccattaatttccaagtctaaagaaaaccaaccaacggtcataatttgttttatagaacctt 27956363  T
Q  218 gttactaaattgtggtggggcaagaaaatatttagttcgtgg 259  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  27956362 gttactaaattgcggtggggcaagaaaatatttggttcgtgg 27956321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 259
Target Start/End: Complemental strand, 28042143 - 28041996
Alignment:
Q  109 tataaagcttcaattattgattcgtctcactttgacatttctaataatccattaatttccaa-gtctaaagaaaaccaaccaacggtcataatttgtttt 207  Q
    |||||||||||||| ||||    ||||||||||  ||||| ||||||||| | | ||||||| ||||||||| ||||||||||||| ||| ||||| |||    
T  28042143 tataaagcttcaataattg----gtctcactttctcatttgtaataatccttcattttccaaagtctaaagataaccaaccaacggccatgatttggttt 28042048  T
Q  208 gaagaaccttgttactaaattgtggtggggcaagaaaatatttagttcgtgg 259  Q
    ||| ||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  28042047 gaaaaacattgttactaaattgtggtggggcaagaagatatttcgttagtgg 28041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 28477258 - 28477337
Alignment:
Q  168 caagtctaaagaaaaccaaccaacggtcataatttgttttgaagaaccttgttactaaattgtggtggggcaagaaaata 247  Q
    ||||||||| |||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||| ||||||||||    
T  28477258 caagtctaatgaaaaccaaccaacggtcatgatttagtttgaagaaccatgttactaaattgtggtgggtcaagaaaata 28477337  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 28042481 - 28042340
Alignment:
Q  110 ataaagcttcaattattgattcgtctcactttgacatttctaataatccattaatttccaagtctaaagaaaaccaaccaacg----gtcataatttgtt 205  Q
    ||||||||||||| || |||| || |||| ||||||||| |||||| ||||| |||||||||| ||||||||||||||||||     ||||  |||||||    
T  28042481 ataaagcttcaataat-gattggtatcacattgacatttgtaataacccattcatttccaagtataaagaaaaccaaccaaccaactgtcaggatttgtt 28042383  T
Q  206 ttgaagaaccttgttactaaattgtggtggggcaag-aaaatattt 250  Q
    |||||||   |||||||||| ||||||||||||||| |||||||||    
T  28042382 ttgaaga---ttgttactaagttgtggtggggcaagtaaaatattt 28042340  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 28477132 - 28477196
Alignment:
Q  18 gaatggacattactcagtagtataaagtaatgtttccattatttagaatctttacagctagctag 82  Q
    ||||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||||    
T  28477132 gaatggacattactcagtagtataaatcaatgtttccattattgataatctttacagctagctag 28477196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 28124138 - 28124067
Alignment:
Q  165 ttccaagtctaaagaaaaccaaccaacggtcataatttgttttgaagaaccttgttactaaattgtggtggg 236  Q
    |||||||||||||||||||| ||| |||||||| ||||  |||||||| |||||||||||||||||||||||    
T  28124138 ttccaagtctaaagaaaacccaccgacggtcatgatttagtttgaagagccttgttactaaattgtggtggg 28124067  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 28138528 - 28138457
Alignment:
Q  165 ttccaagtctaaagaaaaccaaccaacggtcataatttgttttgaagaaccttgttactaaattgtggtggg 236  Q
    |||||||||||||||||||| ||| |||||||| ||||  |||||||| |||||||||||||||| ||||||    
T  28138528 ttccaagtctaaagaaaacccaccgacggtcatgatttagtttgaagacccttgttactaaattgaggtggg 28138457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 28139947 - 28139876
Alignment:
Q  165 ttccaagtctaaagaaaaccaaccaacggtcataatttgttttgaagaaccttgttactaaattgtggtggg 236  Q
    |||||||||||||||||||| ||| |||||||| ||||  ||||||||  ||||||||||||||||||||||    
T  28139947 ttccaagtctaaagaaaacccaccgacggtcatgatttagtttgaagactcttgttactaaattgtggtggg 28139876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 28140056 - 28140008
Alignment:
Q  34 gtagtataaagtaatgtttccattatttagaatctttacagctagctag 82  Q
    |||||||||||| |||||||||||||| | |||||||||||||||||||    
T  28140056 gtagtataaagtgatgtttccattattgacaatctttacagctagctag 28140008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 28138636 - 28138589
Alignment:
Q  35 tagtataaagtaatgtttccattatttagaatctttacagctagctag 82  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||    
T  28138636 tagtataaagtgatgtttccattattgacaatctttacagctagctag 28138589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 28124247 - 28124201
Alignment:
Q  34 gtagtataaagtaatgtttccattatttagaatctttacagctagct 80  Q
    |||||||||||| |||||||||||||| | |||||||||||||||||    
T  28124247 gtagtataaagtgatgtttccattattgacaatctttacagctagct 28124201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 28042226 - 28042184
Alignment:
Q  35 tagtataaagtaatgtttccattatttagaatctttacagcta 77  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  28042226 tagtataaagtaaagtttccattatctagaacctttacagcta 28042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 26027156 - 26027041
Alignment:
Q  135 tcactttgacatttctaataatccattaatttccaagtctaaagaaaaccaaccaacggtcataatttgttttgaagaaccttgttactaaattgtggtg 234  Q
    |||||||||||||| ||||| |||||| ||||| ||||||||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||||||||    
T  26027156 tcactttgacatttgtaatagtccattcatttcaaagtctaaagaaaaccagccaacgatcatgatttggtttgaagaagcttgttactaaattgtggtg 26027057  T
Q  235 gggcaagaaaatattt 250  Q
    |||||||| |||||||    
T  26027056 gggcaagataatattt 26027041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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