View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19621_high_1 (Length: 585)
Name: NF19621_high_1
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Original strand, 34466197 - 34466755
Alignment:
| Q |
19 |
aataaaacattaaaaggtatagtttgcaaatatgtttaggcaatattttcggacgtacaatatcattatagtttattctatcaccctaattgaaatctac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
34466197 |
aataaaacattaaaaggtatagtttgcaaatatgtttaggcaatattttcggacgtacaatatcattatagtttattctatcaccctaattaaaatctgc |
34466296 |
T |
|
| Q |
119 |
ccaaattgtatttcttttatagtctttccaatttaattttattttgtatgcaagcagtaaagaaaacttgctgccaaatgctaatgtttaacaaggattc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466297 |
ccaaattgtatttcttttatagtctttccaatttaatttaattttgtatgcaagcagtaaagaaaacttgctgccaaatgctaatgtttaacaaggattc |
34466396 |
T |
|
| Q |
219 |
agtttccttggaatcaatagaaactcatagtcacaccgtaaaaccattttggtcgtttgacgaagaccgaacaactcatatataaacttatcaaatccac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34466397 |
agtttccttggaatcaatagaaactcatagtcacaccgtaaaaccattttggtcgtttgacgaagaccgaataactcatatataaacttatcaaatcctt |
34466496 |
T |
|
| Q |
319 |
ttcaaatcataagtttgaggtatgaatcgttagattctcatctttctttacttatatcactcataatcgttagattctcatctttctctctatatctctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466497 |
ttcaaatcataagtttgaggtatgaatcgttagattctcatctttctttacttatatcactcataatcgttagattctcatctttctctctatatctctt |
34466596 |
T |
|
| Q |
419 |
gtaaggctattannnnnnnctcaatgtacccctaccttgaccatagatcttgtgcaaaatatatatgtagaacgcgccagcataaatgaattgaccaata |
518 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466597 |
gtaaggctattatttttttctcaatgtacccctaccttgaccatagatcttgtgcaaaatatatatgtagaacgcgccagcataaatgaattgaccaata |
34466696 |
T |
|
| Q |
519 |
tcggtcatctataaaatatgaatgttttgcttacacagctgcatatacacaggttctgc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34466697 |
tcggtcatctataaaatatgaatgttttgcttacacagctgcatatacacagtttctgc |
34466755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 34464851 - 34464981
Alignment:
| Q |
79 |
tatcattatagtttattctatcaccctaattgaaatctacccaaattgtatttcttttatagtctttccaatttaattttattttgtatgcaagcagtaa |
178 |
Q |
| |
|
||||| |||||||| ||| ||||| ||| || |||| ||||||||||||||||||||| ||| ||| ||||||||||| |||||| ||||||||||| | |
|
|
| T |
34464851 |
tatcaatatagtttgttcaatcactctagttaaaattcacccaaattgtatttcttttacagt-ttttcaatttaatttaattttgcatgcaagcagtta |
34464949 |
T |
|
| Q |
179 |
agaaaacttgctgccaaatgctaatgtttaaca |
211 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||| |
|
|
| T |
34464950 |
ag-aaactttctgggaaatgctaatgtttaaca |
34464981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University