View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19621_high_10 (Length: 313)

Name: NF19621_high_10
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19621_high_10
NF19621_high_10
[»] chr1 (1 HSPs)
chr1 (1-299)||(626390-626688)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 626390 - 626688
Alignment:
Q  1 attattcttagaaacacaactgcgattttagaccttgatgaactgtcatagtaacttgaagctcaatgaacgatgcgatgggttggttaggtggtggtat 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  626390 attattcttagaaacacgactgcgattttagaccttggtgaactatcatagtaacttgaagctcaatgaacgatgcgatgggttggttaggtggtggtat 626489  T
Q  101 gataactatgtgacacataaacatgaacaacagaacaagcatatttgtgtgatatacgtgttgaaaatgaaaggggaccatgtacaatacaacataaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  626490 gataactatgtgacacataaacatgaacaacagaacaagcatatttgtgtgatatacgtgttgaaaatgaaaggggaccatgtacaatacaacataaatt 626589  T
Q  201 acatgctgtatttggtatgatggtcctaagaactgagaaagagcctggcaacacataaaagacaaactttacagcaagaaactaatgacatgatgttca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  626590 acatgctgtatttggtatgatggtcctaagaactgagaaagagcctggcaacacataaaagacaaactttacagcaagaaactaatgacatgatgttca 626688  T

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