View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19621_high_11 (Length: 311)
Name: NF19621_high_11
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 40188419 - 40188142
Alignment:
| Q |
19 |
gaaacaccaatattattcatttgaggagagagtgaaaaacctaaccagttattttcattgttaatgtcaacactatcatcattgttttccattctcttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188419 |
gaaacaccaatattattcatttgaggagagagtgaaaaacctaaccagttattttcattgttaatgtcaacactatcatcattgttttccattctcttca |
40188320 |
T |
|
| Q |
119 |
tattttctctcacaagataacaaaataacaaggaaaatatgtctagaagcaatgcaactcaatcatatactaatcataccatatctaagtatctaaccaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40188319 |
tattttctctcacaagataacaaaataacaaggaaaatatgtctagaagcaatgcaactcaatcatatactaatcataccatatctaagtatctaacaaa |
40188220 |
T |
|
| Q |
219 |
caatgtaatgaaatatatctataaactctctttggtttttgtgtgccttagttagtatataagggtatatgtatatct |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40188219 |
caatgtaatgaaatatatctataaactctctttggtttttgtgtgccttagttagtatataagggtatatgtatatct |
40188142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University