View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_high_12 (Length: 310)
Name: NF19621_high_12
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 164 - 295
Target Start/End: Complemental strand, 44767665 - 44767534
Alignment:
| Q |
164 |
gtcaatctgaatgaaacgaacataacaataagatgagaaatcaaaactacgtaccaaaacgcgaacaacaacattgtatcacttaaacgacgaaatcaca |
263 |
Q |
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| T |
44767665 |
gtcaatctgaatgaaacgaacataacaataagatgagaaatcaaaactacacaccaaaacgcgaacaacaacattttatcactcaaacgacgaaatcaca |
44767566 |
T |
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| Q |
264 |
aacaaaacataatacaaaaacggaatgtatgt |
295 |
Q |
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| T |
44767565 |
aacaaaacataatacaaaaacggaatctatgt |
44767534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 44767790 - 44767741
Alignment:
| Q |
83 |
gtgacaaaatgcatacaaatgtgacaaaataaaggtgttcggaataccat |
132 |
Q |
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| T |
44767790 |
gtgacaaaatgtttacaaatgtgacaaaataaaggcattcggaataccat |
44767741 |
T |
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