View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_high_19 (Length: 247)
Name: NF19621_high_19
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_high_19 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 28103033 - 28102793
Alignment:
| Q |
6 |
caagaatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgacgctactcttagtagaagatttggggtct |
105 |
Q |
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| T |
28103033 |
caagaatattggaggaagagaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgac-ctactcttagtagaagatttggggtct |
28102935 |
T |
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| Q |
106 |
ttgcaagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatga |
205 |
Q |
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| T |
28102934 |
ttgcaagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatga |
28102835 |
T |
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| Q |
206 |
gaaacagcctcctttttgtgtcaattggaagttctgggacac |
247 |
Q |
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| T |
28102834 |
gaaacagcctcctttttgtgtcaattggaagttctgggacac |
28102793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 36904968 - 36905210
Alignment:
| Q |
6 |
caagaatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgacgctactcttagtagaagatttggggtct |
105 |
Q |
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| T |
36904968 |
caagaatattggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatgatgctactcttagtagaagatttggggtct |
36905067 |
T |
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| Q |
106 |
ttgcaagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatga |
205 |
Q |
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| T |
36905068 |
ttgcaagggtgcttgtagatgttgatctatctgaacaattatttgagtcagtggttgttgaaattgaagggtacattctatccattgatatccaatatga |
36905167 |
T |
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| Q |
206 |
gaaacagcctcctttttgtgtcaattg-gaagttctgggacac |
247 |
Q |
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| T |
36905168 |
gaagtaacctcctttttgagtcaattgtaaagttctgggacac |
36905210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 38983224 - 38983295
Alignment:
| Q |
5 |
ccaagaatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatga |
76 |
Q |
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| T |
38983224 |
ccaagaatattagaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
38983295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 51523489 - 51523709
Alignment:
| Q |
6 |
caagaatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgacgctactcttagtagaagatttgggg-tc |
104 |
Q |
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| T |
51523489 |
caagaatattggagaaaaacaactttgtttgagatttcctctggattgtgtacccctctttccattgatgaagctactataagtagacgttatgggggtt |
51523588 |
T |
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| Q |
105 |
tttgcaagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatg |
204 |
Q |
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| T |
51523589 |
tttgccaggattcttgtggatgttgacctttctgagcagttatttgagtatgtggttgtggaaacagaaggccatgctttatttattgatgtccaatatg |
51523688 |
T |
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| Q |
205 |
agaaacagcctcctttttgtg |
225 |
Q |
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| T |
51523689 |
agaagcaaccacttttttgtg |
51523709 |
T |
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