View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19621_high_7 (Length: 380)
Name: NF19621_high_7
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_high_7 |
 | |
|
| [»] scaffold0032 (2 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0032 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 25992 - 26345
Alignment:
| Q |
10 |
attatactacatgagataaagaggca-aatggtatacaaatggtcaaagggcg-tcaattaaacaaggaaaagctatagattttgtatcttccagaaaca |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25992 |
attacactacatgagataaagaggcagaatggtatacaaatggtcaaagggcggtcaattaaacaaggaaaacctatagattttgtatcttccagaaaca |
26091 |
T |
|
| Q |
108 |
agtggctctgcacacaatcatgaaaaatgaccagaagctagcgcaagaaacaaaaaaggaagacggtgattgaaagaagaaaaccttaaggtgaagtact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26092 |
agtggctctgcacacaatcatgaaaaatgaacagaagctagagcaagaaacaaaaaaggaagacggtgattgaaagaagaaaaccttacggtgaagtact |
26191 |
T |
|
| Q |
208 |
cttgggggcggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaaggaagcggagacacactgcagagaggattggaatttagagaag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
26192 |
tttgggggcggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaaggaag-ggatacacactgcagagaggattggaattgagagaag |
26290 |
T |
|
| Q |
308 |
agaacacaagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
362 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26291 |
agaacacgagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
26345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 21296 - 21644
Alignment:
| Q |
15 |
actacatgagataaagaggca-aatggtatacaaatggtcaaagggcg-tcaattaaacaaggaaaagctatagattttgtatcttccagaaacaagtgg |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21296 |
actacatgagataaagaggcagaatggtatacaaatggtcaaagggcggtcaattaaacaaggaaaatctatagattttgtatcttccagaaacaagtgg |
21395 |
T |
|
| Q |
113 |
ctctgcacacaatcatgaaaaatgaccagaagctagcgcaagaaacaaaaaaggaagacggtgattgaaagaagaaaaccttaaggtgaagtactcttgg |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
21396 |
ctctgcacacaatcatgaaaaatgaacagaagctagtgcaagaaacaaaaaaggaagacggtgattgaaagaagaaaaccttacggtgaagtacttttgg |
21495 |
T |
|
| Q |
213 |
gggcggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaaggaagcggagacacactgcagagaggattggaatttagagaagagaac |
312 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
21496 |
gggcggtaaaattgaattcatgaggtatatataaagcattgcaaatcaacaaggaag-ggatacacactacagagaggattggaattgagagaagagaac |
21594 |
T |
|
| Q |
313 |
acaagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
362 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21595 |
acgagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
21644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 17341773 - 17342127
Alignment:
| Q |
10 |
attatactacatgagataaagaggca-aatggtatacaaatggtcaaagggcg-tcaattaaacaaggaaaagctatagattttgtatcttccagaaaca |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17341773 |
attacactacatgagataaagaggcagaatggtatacaaatggtcaaagggcggtcaattaaacaaggaaaaactatagattttgtatcttccagaaaca |
17341872 |
T |
|
| Q |
108 |
agtggctctgcacacaatcatgaaaaatgaccagaagctagcgcaagaaacaaaaaaggaagacggtgattgaaagaagaaaaccttaaggtgaagtact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
17341873 |
agtggctctgcacacaatcatgaaaaatgaacagaagctagagcaagaaacaaaaaaggaagacggtgattgaaagaagaaaaccttacgatgaagtact |
17341972 |
T |
|
| Q |
208 |
cttgggggcggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaaggaagcggagacacactgcagagaggattggaatttagagaag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
17341973 |
tttgggggcggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaaggaaggggatacacactgcagagaggattggaattgagagaag |
17342072 |
T |
|
| Q |
308 |
agaacacaagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
362 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17342073 |
agaacacgagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
17342127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 11063923 - 11063819
Alignment:
| Q |
77 |
aaagctatagattttgtatcttccagaaacaa------gtggctctgcacacaatcatgaaaaatgaccagaagctagcgcaagaaacaaaaaaggaaga |
170 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
11063923 |
aaagctatagattttgtatcttccaaaaacaaaaacaagtggctctgcacacaatcatgagaaatgaacagaagctagcgcaagaaac-aaagaggaaga |
11063825 |
T |
|
| Q |
171 |
cggtga |
176 |
Q |
| |
|
|||||| |
|
|
| T |
11063824 |
cggtga |
11063819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 11064083 - 11064013
Alignment:
| Q |
15 |
actacatgagataaagaggca-aatggtatacaaatggtcaaagggc-gtcaattaaacaaggaaaagcta |
83 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11064083 |
actacatgagataaaaaggcagaatggtatacaaatggtcaaagggcggtcaattaaacaaggaaaagcta |
11064013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 31961784 - 31961885
Alignment:
| Q |
160 |
aaaaaggaagacggtgattgaaagaagaaaaccttaaggtgaagtactcttgggggcggtgaaattgaattcatgaggtctatataaagcattgcaaatc |
259 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31961784 |
aaaaaggaagatggtgatagaaagaagaaaacctgaaggtgaagtacttttgggggcggtgaaattgaattcatgaggtctatataaagcatttcaaatc |
31961883 |
T |
|
| Q |
260 |
aa |
261 |
Q |
| |
|
|| |
|
|
| T |
31961884 |
aa |
31961885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 27611046 - 27611145
Alignment:
| Q |
77 |
aaagctatagattttgtatcttccagaaacaagtggctctgcacacaatcatgaaaaatgaccag-aagctagcgcaagaaacaaaaaaggaagacggtg |
175 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
27611046 |
aaagctatagattttgtatcttccaaaaacaagtggctctgcacacaatcatgagaaatgaacagaaagctagcacaagaaac-aaaaaggaagacggtg |
27611144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 27611257 - 27611334
Alignment:
| Q |
283 |
cagagaggattggaatttagagaagagaacacaagagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
362 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27611257 |
cagagaggattggaattgacagaagagaacac--gagagagtttgaagatcttgaagtagggattgaagttggagcaaaa |
27611334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 22406756 - 22406673
Alignment:
| Q |
185 |
agaaaaccttaaggtgaagtactcttggggg-cggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaagga |
267 |
Q |
| |
|
||||||||||| |||||||| | ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22406756 |
agaaaaccttactgtgaagtaattttggggggcggtgaaattgagttcaagaggtctatataaagcattgcaaatcaacaagga |
22406673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 27610886 - 27610956
Alignment:
| Q |
15 |
actacatgagataaagaggca-aatggtatacaaatggtcaaagggcg-tcaattaaacaaggaaaagcta |
83 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
27610886 |
actacatgagataaagaggcagaatggtatacaaatgatcaaagggcggtcaattaaacaaggaaaagcta |
27610956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 21432725 - 21432630
Alignment:
| Q |
170 |
acggtgattgaaagaagaaaaccttaaggtgaagtactcttgggggcggtgaaattgaattcatgaggtctatataaagcattgcaaatcaacaag |
265 |
Q |
| |
|
|||||||| | ||||||||||||| | |||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
21432725 |
acggtgatggtaagaagaaaacctgattgtgaagtaattttgggggcggtgaaattgaattcaagaggtctttataaagcattgcaaatcaacaag |
21432630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 16139880 - 16139805
Alignment:
| Q |
289 |
ggattggaatttagagaagagaacacaagagagag--tttgaagatcttgaattagggattgaagttggagcaaaa |
362 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
16139880 |
ggattggaattgagagaagagaacatgagagagagagtttgaagatcttggagtagagattgaagttggagcaaaa |
16139805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 26115299 - 26115373
Alignment:
| Q |
290 |
gattggaatttagagaagagaacacaa--gagagagtttgaagatcttgaattagggattgaagttggagcaaaa |
362 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
26115299 |
gattggaattgagagaagagaacacaagtgatagagtttgaagatcttggggtagagactgaagttggagcaaaa |
26115373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 4891 - 4823
Alignment:
| Q |
17 |
tacatgagataaagaggc-aaatggtatacaaatggtcaaagggc-gtcaattaaacaaggaaaagcta |
83 |
Q |
| |
|
||||||||||||| |||| |||||| |||||| ||||||| |||| ||||||| ||||| ||||||||| |
|
|
| T |
4891 |
tacatgagataaacaggcaaaatggaatacaactggtcaaggggcggtcaattgaacaaagaaaagcta |
4823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University