View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19621_low_16 (Length: 277)

Name: NF19621_low_16
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19621_low_16
NF19621_low_16
[»] chr4 (1 HSPs)
chr4 (43-143)||(10634239-10634339)
[»] chr5 (1 HSPs)
chr5 (207-269)||(17205598-17205660)
[»] chr1 (5 HSPs)
chr1 (41-240)||(29718792-29718994)
chr1 (41-148)||(29658765-29658872)
chr1 (41-148)||(29691280-29691387)
chr1 (41-148)||(33160696-33160803)
chr1 (73-143)||(30827304-30827374)
[»] chr6 (1 HSPs)
chr6 (43-137)||(6594411-6594505)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 10634239 - 10634339
Alignment:
Q  43 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctatt 142  Q
    |||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  10634239 aagtctctttgtttggctcactgtgagctgttgggagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttatt 10634338  T
Q  143 g 143  Q
    |    
T  10634339 g 10634339  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 17205660 - 17205598
Alignment:
Q  207 cttgtcatacacagatgttgatgataaatcactctgtctcatctcaaagtgttttcctatgct 269  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17205660 cttgtcatacacagatgttgatgataaatcactctgtatcatctaaaagtgttttcctatgct 17205598  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 29718792 - 29718994
Alignment:
Q  41 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 140  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29718792 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29718891  T
Q  141 ttggaagggcatgtgtgaggaaattgttggtctagtattaaga---tgtcataatcttaagcatatgaacttgtcatacacagatgttgatgataaatca 237  Q
    ||||||||   ||| ||| |||| ||||  |  ||| ||||||   |||  |||  |||||||| ||||||||||||| ||  | |||||||||||||||    
T  29718892 ttggaaggaagtgtctgaagaaactgtttctaaagttttaagatgttgtactaagattaagcatttgaacttgtcatataccaacgttgatgataaatca 29718991  T
Q  238 ctc 240  Q
    |||    
T  29718992 ctc 29718994  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 29658765 - 29658872
Alignment:
Q  41 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 140  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||| |  ||||| |||||||||||||||||||||| ||||| |||||||||||    
T  29658765 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagcta 29658864  T
Q  141 ttggaagg 148  Q
    ||||||||    
T  29658865 ttggaagg 29658872  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 29691280 - 29691387
Alignment:
Q  41 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 140  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29691280 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29691379  T
Q  141 ttggaagg 148  Q
    ||||||||    
T  29691380 ttggaagg 29691387  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 33160803 - 33160696
Alignment:
Q  41 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 140  Q
    |||||||||||| ||||||  ||||| |||  |||||||||||||||||| |  ||||| ||| ||| |||||||| ||||||||||| |||||||||||    
T  33160803 taaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagcta 33160704  T
Q  141 ttggaagg 148  Q
    || |||||    
T  33160703 ttcgaagg 33160696  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 30827374 - 30827304
Alignment:
Q  73 ttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctattg 143  Q
    |||||||||||||||||| |  |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  30827374 ttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 30827304  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 6594411 - 6594505
Alignment:
Q  43 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgag 137  Q
    ||||||||||||||||||  |||| |||  |||| ||||||||||||| |  ||||| |||| ||||||||||  |||||| |||| ||||||||    
T  6594411 aagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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