View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_low_17 (Length: 277)
Name: NF19621_low_17
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 41333224 - 41332972
Alignment:
| Q |
9 |
gacatcatcagtgaggttggttccaaaaattagactgctataccttccaccctgagtgtccctccctctaccataagacggcaagggatcaatcaccggc |
108 |
Q |
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| T |
41333224 |
gacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagtgtccctccctctaccataagacggcaagggatcaatcaccggc |
41333125 |
T |
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| Q |
109 |
cattcactttcatcctaacaaaacacaaacatagtattgaaatactttaattacatatggtgaagagttacgttacattttcatattcatattgacagga |
208 |
Q |
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| T |
41333124 |
cattcactttcatcctaacaaaacacaaacatagtattgaaatactttaattacatatggtgaagagttacgttacattttcatattcatattgacagga |
41333025 |
T |
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| Q |
209 |
aaaagttagttaagctattatcaaacctgagaaccaagaatgacagcatcttt |
261 |
Q |
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| T |
41333024 |
aaaagttagttaagctattatcaaacctgagaaccaagaatgacagcatcttt |
41332972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 31382529 - 31382580
Alignment:
| Q |
14 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagt |
65 |
Q |
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| T |
31382529 |
catcagtgaggttggttacaaaaattagactgctataacttccaccttgagt |
31382580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 31397813 - 31397864
Alignment:
| Q |
14 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagt |
65 |
Q |
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| T |
31397813 |
catcagtcaggttggttccaaaaattagactgctctacctgccaccctgagt |
31397864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 30365294 - 30365345
Alignment:
| Q |
14 |
catcagtgaggttggttccaaaaattagactgctataccttccaccctgagt |
65 |
Q |
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|||||||||||||||||| |||||| | |||||||||||||||||| ||||| |
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| T |
30365294 |
catcagtgaggttggttcaaaaaatgaaactgctataccttccaccttgagt |
30365345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 45083377 - 45083422
Alignment:
| Q |
14 |
catcagtgaggttggttccaaaaattagactgctataccttccacc |
59 |
Q |
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||||| ||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
45083377 |
catcaatgaggttagttccaaaaatgagactgctaaaccttccacc |
45083422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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