View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19621_low_18 (Length: 257)

Name: NF19621_low_18
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19621_low_18
NF19621_low_18
[»] chr7 (12 HSPs)
chr7 (120-241)||(21129005-21129126)
chr7 (75-108)||(47973884-47973917)
chr7 (73-109)||(21852762-21852798)
chr7 (75-111)||(43596538-43596574)
chr7 (71-106)||(1263785-1263820)
chr7 (83-116)||(12787558-12787591)
chr7 (75-108)||(17167812-17167845)
chr7 (75-116)||(28000144-28000185)
chr7 (75-108)||(45639750-45639783)
chr7 (75-107)||(18655375-18655407)
chr7 (75-107)||(31417528-31417560)
chr7 (75-107)||(44412558-44412590)
[»] chr1 (11 HSPs)
chr1 (75-118)||(21771066-21771109)
chr1 (71-109)||(39657270-39657308)
chr1 (75-114)||(10176429-10176468)
chr1 (75-117)||(23889666-23889708)
chr1 (75-108)||(16555323-16555356)
chr1 (75-116)||(26399543-26399584)
chr1 (75-112)||(27142830-27142867)
chr1 (75-111)||(36454509-36454546)
chr1 (76-108)||(13296043-13296075)
chr1 (75-107)||(26486795-26486827)
chr1 (75-107)||(52413120-52413152)
[»] scaffold0009 (1 HSPs)
scaffold0009 (71-112)||(263269-263311)
[»] chr3 (16 HSPs)
chr3 (71-105)||(9161250-9161284)
chr3 (75-107)||(31341225-31341257)
chr3 (75-110)||(29853653-29853688)
chr3 (71-106)||(51688011-51688046)
chr3 (75-114)||(55090269-55090308)
chr3 (75-109)||(33898298-33898332)
chr3 (75-108)||(1351493-1351526)
chr3 (75-108)||(11761080-11761113)
chr3 (75-116)||(35434098-35434139)
chr3 (75-108)||(39846606-39846639)
chr3 (75-116)||(45151615-45151656)
chr3 (75-108)||(46994117-46994150)
chr3 (75-108)||(48418652-48418685)
chr3 (75-107)||(17261024-17261056)
chr3 (75-107)||(35359471-35359503)
chr3 (75-107)||(54012614-54012646)
[»] chr8 (10 HSPs)
chr8 (75-116)||(39301871-39301912)
chr8 (75-114)||(45530494-45530533)
chr8 (75-113)||(3448898-3448936)
chr8 (75-116)||(21692631-21692672)
chr8 (75-108)||(22686741-22686774)
chr8 (75-108)||(23564100-23564133)
chr8 (75-108)||(38687537-38687570)
chr8 (76-104)||(12501995-12502023)
chr8 (75-107)||(41708827-41708859)
chr8 (75-107)||(43383016-43383048)
[»] chr5 (7 HSPs)
chr5 (71-108)||(5661896-5661933)
chr5 (76-107)||(27433519-27433550)
chr5 (71-112)||(16920678-16920719)
chr5 (75-108)||(28593550-28593583)
chr5 (75-107)||(2724483-2724515)
chr5 (71-110)||(18254147-18254187)
chr5 (75-107)||(25963147-25963179)
[»] chr2 (22 HSPs)
chr2 (75-112)||(8214585-8214622)
chr2 (75-115)||(38358517-38358557)
chr2 (75-106)||(5558478-5558509)
chr2 (75-110)||(24951900-24951935)
chr2 (75-106)||(32596405-32596436)
chr2 (71-105)||(1366790-1366824)
chr2 (75-113)||(8898292-8898330)
chr2 (75-113)||(28739401-28739439)
chr2 (75-112)||(7327762-7327799)
chr2 (75-116)||(14793242-14793283)
chr2 (75-108)||(14793481-14793514)
chr2 (75-108)||(24952081-24952114)
chr2 (71-108)||(25299329-25299366)
chr2 (75-108)||(32845688-32845721)
chr2 (75-108)||(33441503-33441536)
chr2 (75-108)||(36944256-36944289)
chr2 (75-108)||(43766507-43766540)
chr2 (75-112)||(45632751-45632788)
chr2 (75-111)||(11115255-11115291)
chr2 (76-108)||(13692002-13692034)
chr2 (75-107)||(16139142-16139174)
chr2 (75-107)||(32845456-32845488)
[»] scaffold0032 (1 HSPs)
scaffold0032 (76-107)||(71651-71682)
[»] chr4 (19 HSPs)
chr4 (71-106)||(26144369-26144404)
chr4 (75-117)||(3475475-3475517)
chr4 (75-105)||(8974270-8974300)
chr4 (75-116)||(6439447-6439488)
chr4 (75-108)||(12144543-12144576)
chr4 (75-108)||(12878673-12878706)
chr4 (75-108)||(13033152-13033185)
chr4 (75-108)||(33294939-33294972)
chr4 (76-109)||(34318663-34318696)
chr4 (75-108)||(36405657-36405690)
chr4 (75-116)||(54097090-54097131)
chr4 (75-107)||(1952734-1952766)
chr4 (75-115)||(13032878-13032918)
chr4 (75-107)||(26144157-26144189)
chr4 (71-107)||(27449862-27449898)
chr4 (75-107)||(35370414-35370446)
chr4 (75-107)||(36405879-36405911)
chr4 (75-107)||(46360919-46360951)
chr4 (75-107)||(47858455-47858487)
[»] scaffold0053 (1 HSPs)
scaffold0053 (75-113)||(29903-29941)
[»] chr6 (8 HSPs)
chr6 (71-105)||(27967721-27967755)
chr6 (75-116)||(21604110-21604151)
chr6 (75-112)||(31826209-31826246)
chr6 (75-108)||(33552796-33552829)
chr6 (75-107)||(7017069-7017101)
chr6 (75-107)||(25562153-25562185)
chr6 (75-107)||(26101667-26101699)
chr6 (75-107)||(33225441-33225473)
[»] scaffold0192 (1 HSPs)
scaffold0192 (75-107)||(14473-14505)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 21129126 - 21129005
Alignment:
Q  120 tatttattgatttcgaatatatttcttgtaagagatttaagtcactaatcaagaaactaaatttatatttcttttatagaaaaaggaacatttattacaa 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  21129126 tatttattgatttcgaatatatttcttgtaagagatttaactcactaatcaagcaactaagtttatatttcttttatagaaaaaggaacatttattacaa 21129027  T
Q  220 attttaaacatcaatctcctac 241  Q
    ||||||||||||||||||||||    
T  21129026 attttaaacatcaatctcctac 21129005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 47973884 - 47973917
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    ||||||||||||||||||||||||||||||||||    
T  47973884 ctatattacaggggataaagcaccattaacccta 47973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 21852798 - 21852762
Alignment:
Q  73 atctatattacaggggataaagcaccattaaccctat 109  Q
    |||||||||||||||| ||||||||||||||||||||    
T  21852798 atctatattacagggggtaaagcaccattaaccctat 21852762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 43596538 - 43596574
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatat 111  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43596538 ctatattacagggggtaaagcaccattaaccctatat 43596574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 1263820 - 1263785
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaaccc 106  Q
    |||||||||||||||||| |||||||||||||||||    
T  1263820 tgatctatattacagggggtaaagcaccattaaccc 1263785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 12787558 - 12787591
Alignment:
Q  83 caggggataaagcaccattaaccctatattttat 116  Q
    ||||||||||||||||||||||||||| ||||||    
T  12787558 caggggataaagcaccattaaccctattttttat 12787591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 17167812 - 17167845
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    ||||||||||||||||||||||| ||||||||||    
T  17167812 ctatattacaggggataaagcactattaacccta 17167845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 28000144 - 28000185
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| |||||||||||||||||| | ||||||    
T  28000144 ctatattacagggggtaaagcaccattaacccttttttttat 28000185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 45639750 - 45639783
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  45639750 ctatattacagggggtaaagcaccattaacccta 45639783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 18655407 - 18655375
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  18655407 ctatattacagggggtaaagcaccattaaccct 18655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 31417528 - 31417560
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  31417528 ctatattacagggggtaaagcaccattaaccct 31417560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 44412558 - 44412590
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  44412558 ctatattacagggggtaaagcaccattaaccct 44412590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 21771066 - 21771109
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttatga 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  21771066 ctatattacagggggtaaagcactattaaccctatattttatga 21771109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 39657308 - 39657270
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaaccctat 109  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  39657308 tgatctatattacagggggtaaagcaccattaaccctat 39657270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 10176468 - 10176429
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatttt 114  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  10176468 ctatattacggggggtaaagcaccattaaccctatatttt 10176429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 23889708 - 23889666
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttatg 117  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||    
T  23889708 ctatattacagggggtaaagcacctttaaccctaaattttatg 23889666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 16555356 - 16555323
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  16555356 ctatattacagggggtaaagcaccattaacccta 16555323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 26399543 - 26399584
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||| | |||||||||||||||||| ||||||||    
T  26399543 ctatattacaggaggtaaagcaccattaaccctttattttat 26399584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 27142830 - 27142867
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatt 112  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  27142830 ctatattacagggggtaaagcaccattaacccaatatt 27142867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 36454509 - 36454546
Alignment:
Q  75 ctatattacagg-ggataaagcaccattaaccctatat 111  Q
    |||||||||||| |||||||||||||||||||||||||    
T  36454509 ctatattacaggaggataaagcaccattaaccctatat 36454546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 13296043 - 13296075
Alignment:
Q  76 tatattacaggggataaagcaccattaacccta 108  Q
    ||||||||||||| |||||||||||||||||||    
T  13296043 tatattacagggggtaaagcaccattaacccta 13296075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 26486795 - 26486827
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  26486795 ctatattacagggggtaaagcaccattaaccct 26486827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 52413152 - 52413120
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  52413152 ctatattacagggggtaaagcaccattaaccct 52413120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 263269 - 263311
Alignment:
Q  71 tgatctatattaca-ggggataaagcaccattaaccctatatt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  263269 tgatctatattacatggggataaagcaccattaaccctatatt 263311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 9161284 - 9161250
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaacc 105  Q
    |||||||||||||||||||||||||||||||||||    
T  9161284 tgatctatattacaggggataaagcaccattaacc 9161250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 31341257 - 31341225
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||||||||||||||||||||||    
T  31341257 ctatattacaggggataaagcaccattaaccct 31341225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 29853653 - 29853688
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctata 110  Q
    |||||||||||||| |||||||||||||||||||||    
T  29853653 ctatattacagggggtaaagcaccattaaccctata 29853688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 51688046 - 51688011
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaaccc 106  Q
    |||||||||||||||||| |||||||||||||||||    
T  51688046 tgatctatattacagggggtaaagcaccattaaccc 51688011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 55090269 - 55090308
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatttt 114  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  55090269 ctatattacagggggtaaagcaccattaaccctttatttt 55090308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 33898298 - 33898332
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctat 109  Q
    |||||||||||||| ||||||||||||||||||||    
T  33898298 ctatattacagggggtaaagcaccattaaccctat 33898332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 1351493 - 1351526
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  1351493 ctatattacagggggtaaagcaccattaacccta 1351526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 11761113 - 11761080
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  11761113 ctatattacagggggtaaagcaccattaacccta 11761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 35434098 - 35434139
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  35434098 ctatattacagggggtaaagcaccattaacccttaattttat 35434139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 39846606 - 39846639
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  39846606 ctatattacagggggtaaagcaccattaacccta 39846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 45151656 - 45151615
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| ||||||||  |||||||||||||||||    
T  45151656 ctatattacagggggtaaagcactgttaaccctatattttat 45151615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 46994117 - 46994150
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  46994117 ctatattacagggggtaaagcaccattaacccta 46994150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 48418685 - 48418652
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  48418685 ctatattacagggggtaaagcaccattaacccta 48418652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 17261056 - 17261024
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  17261056 ctatattacagggggtaaagcaccattaaccct 17261024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 35359503 - 35359471
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  35359503 ctatattacagggggtaaagcaccattaaccct 35359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 54012614 - 54012646
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  54012614 ctatattacagggggtaaagcaccattaaccct 54012646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 39301912 - 39301871
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  39301912 ctatattacaggggataaagcaccattaacccttttttttat 39301871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 45530533 - 45530494
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatttt 114  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  45530533 ctatattacagggggtaaagcaccattaaccctatttttt 45530494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 3448898 - 3448936
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattt 113  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  3448898 ctatattacaggggataaaacaccattaaccttatattt 3448936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 21692631 - 21692672
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  21692631 ctatattacagggggtaaagcaccattaacccttaattttat 21692672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 22686774 - 22686741
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  22686774 ctatattacagggggtaaagcaccattaacccta 22686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 23564133 - 23564100
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  23564133 ctatattacagggggtaaagcaccattaacccta 23564100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 38687537 - 38687570
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    ||||||||||||||||||| ||||||||||||||    
T  38687537 ctatattacaggggataaaacaccattaacccta 38687570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 12501995 - 12502023
Alignment:
Q  76 tatattacaggggataaagcaccattaac 104  Q
    |||||||||||||||||||||||||||||    
T  12501995 tatattacaggggataaagcaccattaac 12502023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 41708859 - 41708827
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  41708859 ctatattacagggggtaaagcaccattaaccct 41708827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 43383016 - 43383048
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  43383016 ctatattacagggggtaaagcaccattaaccct 43383048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 5661896 - 5661933
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||||||| |||||||||||||||||||    
T  5661896 tgatctatattacagggggtaaagcaccattaacccta 5661933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 27433550 - 27433519
Alignment:
Q  76 tatattacaggggataaagcaccattaaccct 107  Q
    ||||||||||||||||||||||||||||||||    
T  27433550 tatattacaggggataaagcaccattaaccct 27433519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 16920678 - 16920719
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaaccctatatt 112  Q
    |||||||||||||||||| |||||||| ||||||||| ||||    
T  16920678 tgatctatattacagggggtaaagcactattaaccctttatt 16920719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 28593550 - 28593583
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  28593550 ctatattacaggggttaaagcaccattaacccta 28593583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 2724515 - 2724483
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  2724515 ctatattacagggggtaaagcaccattaaccct 2724483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 18254187 - 18254147
Alignment:
Q  71 tgatctatattacagggg-ataaagcaccattaaccctata 110  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  18254187 tgatctatattacagggggataaaacaccattaaccctata 18254147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 25963147 - 25963179
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    ||||||||||||||||||||||| |||||||||    
T  25963147 ctatattacaggggataaagcactattaaccct 25963179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 8214585 - 8214622
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatt 112  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8214585 ctatattacagggggtaaagcaccattaaccctatatt 8214622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 38358517 - 38358557
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatttta 115  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  38358517 ctatattacagggggtaaagcaccattaacccaatatttta 38358557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 5558478 - 5558509
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccc 106  Q
    ||||||||||||||||||||||||||||||||    
T  5558478 ctatattacaggggataaagcaccattaaccc 5558509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 24951935 - 24951900
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctata 110  Q
    |||||||||||||| |||||||||||||||||||||    
T  24951935 ctatattacaggggttaaagcaccattaaccctata 24951900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 106
Target Start/End: Complemental strand, 32596436 - 32596405
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccc 106  Q
    ||||||||||||||||||||||||||||||||    
T  32596436 ctatattacaggggataaagcaccattaaccc 32596405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 1366790 - 1366824
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaacc 105  Q
    |||||||||||||||||| ||||||||||||||||    
T  1366790 tgatctatattacagggggtaaagcaccattaacc 1366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 8898330 - 8898292
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattt 113  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  8898330 ctatattacagagggtaaagcaccattaaccctatattt 8898292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 28739439 - 28739401
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattt 113  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  28739439 ctatattacagggggtaaagcaccattaaccctttattt 28739401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 7327799 - 7327762
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatt 112  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  7327799 ctatattacagggggtaaagcaccattaaccctttatt 7327762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 14793283 - 14793242
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  14793283 ctatattacagggggtaaaacaccattaaccctataatttat 14793242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 14793481 - 14793514
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  14793481 ctatattacagggggtaaagcaccattaacccta 14793514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 24952081 - 24952114
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  24952081 ctatattacagggggtaaagcaccattaacccta 24952114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 25299366 - 25299329
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  25299366 tgatctatattacaggagataaagcaccgttaacccta 25299329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 32845688 - 32845721
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  32845688 ctatattacagggggtaaagcaccattaacccta 32845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 33441536 - 33441503
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  33441536 ctatattacagggggtaaagcaccattaacccta 33441503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 36944256 - 36944289
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  36944256 ctatattacagggggtaaagcaccattaacccta 36944289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 43766507 - 43766540
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  43766507 ctatattacagggggtaaagcaccattaacccta 43766540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 45632751 - 45632788
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatt 112  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  45632751 ctatattaaaggggataaagcaccattaaccctttatt 45632788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 11115291 - 11115255
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatat 111  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11115291 ctatattacagggggtaaaacaccattaaccctatat 11115255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 13692002 - 13692034
Alignment:
Q  76 tatattacaggggataaagcaccattaacccta 108  Q
    ||||||||||||| |||||||||||||||||||    
T  13692002 tatattacagggggtaaagcaccattaacccta 13692034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 16139142 - 16139174
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    ||||||||||||||||||||||| |||||||||    
T  16139142 ctatattacaggggataaagcactattaaccct 16139174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 32845488 - 32845456
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  32845488 ctatattacagggggtaaagcaccattaaccct 32845456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 71682 - 71651
Alignment:
Q  76 tatattacaggggataaagcaccattaaccct 107  Q
    ||||||||||||||||||||||||||||||||    
T  71682 tatattacaggggataaagcaccattaaccct 71651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 26144369 - 26144404
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaaccc 106  Q
    |||||||||||||||||| |||||||||||||||||    
T  26144369 tgatctatattacagggggtaaagcaccattaaccc 26144404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 3475517 - 3475475
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttatg 117  Q
    |||||||||||||| |||||||||||||||||||  |||||||    
T  3475517 ctatattacagggggtaaagcaccattaaccctaatttttatg 3475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 8974300 - 8974270
Alignment:
Q  75 ctatattacaggggataaagcaccattaacc 105  Q
    |||||||||||||||||||||||||||||||    
T  8974300 ctatattacaggggataaagcaccattaacc 8974270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 6439447 - 6439488
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| |||||||||| |||||||||| |||||    
T  6439447 ctatattacagggggtaaagcaccaataaccctataatttat 6439488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 12144576 - 12144543
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  12144576 ctatattacagggggtaaagcaccattaacccta 12144543  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 12878706 - 12878673
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  12878706 ctatattacagggggtaaagcaccattaacccta 12878673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 13033152 - 13033185
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  13033152 ctatattacagggggtaaagcaccattaacccta 13033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 33294972 - 33294939
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  33294972 ctatattacagggggtaaagcaccattaacccta 33294939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 34318663 - 34318696
Alignment:
Q  76 tatattacaggggataaagcaccattaaccctat 109  Q
    ||||||||||||| ||||||||||||||||||||    
T  34318663 tatattacagggggtaaagcaccattaaccctat 34318696  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 36405690 - 36405657
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    |||||||||||||| |||||||||||||||||||    
T  36405690 ctatattacagggggtaaagcaccattaacccta 36405657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 54097131 - 54097090
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||||||||| |||||||||||||||||| | ||||||    
T  54097131 ctatattacagggggtaaagcaccattaacccttttttttat 54097090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 1952766 - 1952734
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  1952766 ctatattacagggggtaaagcaccattaaccct 1952734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 13032918 - 13032878
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatttta 115  Q
    |||||||||||||| |||| ||||||||||||||| |||||    
T  13032918 ctatattacagggggtaaaacaccattaaccctatttttta 13032878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 26144189 - 26144157
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  26144189 ctatattacagggggtaaagcaccattaaccct 26144157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 27449898 - 27449862
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  27449898 tgatctatattacagggggtaaagcaccattagccct 27449862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 35370414 - 35370446
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  35370414 ctatattacagggggtaaagcaccattaaccct 35370446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 36405879 - 36405911
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  36405879 ctatattacagggggtaaagcaccattaaccct 36405911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 46360919 - 46360951
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  46360919 ctatattacagggggtaaagcaccattaaccct 46360951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 47858455 - 47858487
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  47858455 ctatattacagggggtaaagcaccattaaccct 47858487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 29903 - 29941
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattt 113  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  29903 ctatattacagggggtaaagcaccattaaccctagattt 29941  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 27967721 - 27967755
Alignment:
Q  71 tgatctatattacaggggataaagcaccattaacc 105  Q
    |||||||||||||||||| ||||||||||||||||    
T  27967721 tgatctatattacaggggctaaagcaccattaacc 27967755  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 21604151 - 21604110
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatattttat 116  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  21604151 ctatattatagggggtaaagcaccattaaccctataatttat 21604110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 31826246 - 31826209
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccctatatt 112  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  31826246 ctatattacagggggtaaagcaccattaaccctttatt 31826209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 33552796 - 33552829
Alignment:
Q  75 ctatattacaggggataaagcaccattaacccta 108  Q
    ||||||||||||||||||| ||||||||||||||    
T  33552796 ctatattacaggggataaaacaccattaacccta 33552829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 7017101 - 7017069
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  7017101 ctatattacagggggtaaagcaccattaaccct 7017069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 25562185 - 25562153
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  25562185 ctatattacagggggtaaagcaccattaaccct 25562153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 26101699 - 26101667
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  26101699 ctatattacagggggtaaagcaccattaaccct 26101667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 33225473 - 33225441
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  33225473 ctatattacagggggtaaagcaccattaaccct 33225441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 14473 - 14505
Alignment:
Q  75 ctatattacaggggataaagcaccattaaccct 107  Q
    |||||||||||||| ||||||||||||||||||    
T  14473 ctatattacagggggtaaagcaccattaaccct 14505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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