View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_low_2 (Length: 556)
Name: NF19621_low_2
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 4275324 - 4275066
Alignment:
| Q |
19 |
atcctcagttacgtaatcaataccgtgtttgtgaattcacgtgtgtaaaaccttttcaatcaataaaactaggaattcagtttcattttggtttgagtat |
118 |
Q |
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| T |
4275324 |
atcctcagttacgtaatcaataccgtgtttgtgaattcacgtgtgtaaaaccttttcaatcaataaaactaggaattcagtttcattttggtttgagtat |
4275225 |
T |
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| Q |
119 |
catcactgttacatacactaaactgagtcaaactttcattcagcaacagccatgaacgctcttgttgccaccaaccgtaatttccaacgtgcatctcgaa |
218 |
Q |
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| T |
4275224 |
catcactgttacatacactaaactgagtcaaactttcattcagcaacagccatgaatgctcttgttgccaccaaccgtaatttccaacgtgcatctcgaa |
4275125 |
T |
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| Q |
219 |
tccttggtttggattccaaacttgagaaaagccttctcattccttacagagaaatcaag |
277 |
Q |
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| T |
4275124 |
tccttggtttggattccaaacttgagaaaagccttctcattccttacagagaaatcaag |
4275066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 366 - 546
Target Start/End: Complemental strand, 4274977 - 4274797
Alignment:
| Q |
366 |
atcattgtaggtcgaatgtacgatcccaaaagatgatggaagtttggtttcatacgtcggttttcggatccaacatgacaatgcacgtggtcctatgaaa |
465 |
Q |
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| T |
4274977 |
atcattgtaggtcgaatgtacgatcccaaaagatgatggaagtttggtttcatacgtcggttttcggatccaacatgacaatgcacgtggtcctatgaaa |
4274878 |
T |
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| Q |
466 |
ggaggaattcgttatcaccccgaggttttctttctttcttacaatgatttaatattcatgaattttgtcaatgttgatgat |
546 |
Q |
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| T |
4274877 |
ggaggaattcgttatcaccccgaggttttctttctttcttacaatgatttaatattcatgaattttgtcaatgtttatgat |
4274797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 370 - 494
Target Start/End: Original strand, 38823203 - 38823327
Alignment:
| Q |
370 |
ttgtaggtcgaatgtacgatcccaaaagatgatggaagtttggtttcatacgtcggttttcggatccaacatgacaatgcacgtggtcctatgaaaggag |
469 |
Q |
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| T |
38823203 |
ttgtaggttgaatgtactattcccaaagatgatggaactttggtttcttatgttgggtttaggatccaacatgacaatgctcgtggtccaatgaaaggag |
38823302 |
T |
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| Q |
470 |
gaattcgttatcaccccgaggtttt |
494 |
Q |
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| T |
38823303 |
gaattcgttatcaccctgaggtttt |
38823327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 370 - 494
Target Start/End: Original strand, 41209661 - 41209785
Alignment:
| Q |
370 |
ttgtaggtcgaatgtacgatcccaaaagatgatggaagtttggtttcatacgtcggttttcggatccaacatgacaatgcacgtggtcctatgaaaggag |
469 |
Q |
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|||||||| |||||||| || || ||||||||||||| ||||||||| || || || ||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
41209661 |
ttgtaggttgaatgtacaattcccaaagatgatggaactttggtttcttatgttgggtttaggatccaacatgacaatgctcgtggtccaatgaaaggag |
41209760 |
T |
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| Q |
470 |
gaattcgttatcaccccgaggtttt |
494 |
Q |
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| T |
41209761 |
gaattcgttatcaccctgaggtttt |
41209785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 41209392 - 41209483
Alignment:
| Q |
185 |
gccaccaaccgtaatttccaacgtgcatctcgaatccttggtttggattccaaacttgagaaaagccttctcattccttacagagaaatcaa |
276 |
Q |
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||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||| | ||||||||||| |
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| T |
41209392 |
gccacaaaccgtaattttcaacgtgcatctcgtatccttggtttagattccaagcttgagaagagtcttctcattccatttagagaaatcaa |
41209483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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