View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_low_20 (Length: 245)
Name: NF19621_low_20
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28102742 - 28102512
Alignment:
| Q |
1 |
tgtcaaattgaaaaccagaaatgatttgagtggcaagaaacaggttgatgctgacacgttgggcaagctctctggtgctcgaaaagactcacactctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102742 |
tgtcaaattgaaaaccagaaatgatttgagtggcaagaaacaggttgatgctgacacgttgggcaagctctctggtgctcgaaaagactcacactctctt |
28102643 |
T |
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| Q |
101 |
cctagcaagaatctagatggctctgatttgatgcataaagaaactgatgagcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102642 |
cctagcaagaatctagatggctctgatttgatgcataaagaaactgatgagcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatg |
28102543 |
T |
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| Q |
201 |
aaaatacacaatctgaacaggctgctactga |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28102542 |
aaaatacacaatctgaacaggctgctactga |
28102512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36905261 - 36905491
Alignment:
| Q |
1 |
tgtcaaattgaaaaccagaaatgatttgagtggcaagaaacaggttgatgctgacacgttgggcaagctctctggtgctcgaaaagactcacactctctt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
36905261 |
tgtcaaattgaaaaccagaaatgatttgaatggcaagaaacaggttgatgctgtcatgttgggcaaggtatctggtgcttgaaaagactcacactctctg |
36905360 |
T |
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| Q |
101 |
cctagcaagaatctagatggctctgatttgatgcataaagaaactgatgagcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36905361 |
cctaccaagaatctagatggctctgatttgatgcataaagatattgctgagtttgtgaactcccctgttaagattttcgaccttgaaaccaccaatactg |
36905460 |
T |
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| Q |
201 |
aaaatacacaatctgaacaggctgctactga |
231 |
Q |
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||||| |||||||| |||||||||||||||| |
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| T |
36905461 |
aaaatgcacaatctaaacaggctgctactga |
36905491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3249369 - 3249139
Alignment:
| Q |
1 |
tgtcaaattgaaaaccagaaatgatttgagtggcaagaaacaggttgatgctgacacgttgggcaagctctctggtgctcgaaaagactcacactctctt |
100 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
3249369 |
tgtcaaattgaaaaccaaaaatgatttgaatggcaagaaacaggttgatgctgacatgttgggcaaggtctctggtgctagaaaagactcacactctctg |
3249270 |
T |
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| Q |
101 |
cctagcaagaatctagatggctctgatttgatgcataaagaaactgatgagcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatg |
200 |
Q |
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| ||| ||||||||| | ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
3249269 |
catagaaagaatctaaagggcactgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatacta |
3249170 |
T |
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| Q |
201 |
aaaatacacaatctgaacaggctgctactga |
231 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
3249169 |
aaaatacacattctgaacaggctgctactga |
3249139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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