View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_low_21 (Length: 242)
Name: NF19621_low_21
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53108334 - 53108548
Alignment:
| Q |
1 |
ctaatcacaaagtataaatatttttggaaannnnnnnagaactaaaatagcaaagtgatatcatatagtgatttgtttggatgtatatggaaagnnnnnn |
100 |
Q |
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| T |
53108334 |
ctaatcacaaagtataaatatttttg-aaatttttttagaactaaaatagcaaagtgatatcatatagtgatttgtttggatgtatatgaaaa-----aa |
53108427 |
T |
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| Q |
101 |
nnncattacatggtcactatctcttaaaaagaatatcaaacgattggagaacataattaattttgtacgctaatctttacatcataccttgagttgttca |
200 |
Q |
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| T |
53108428 |
aaacattacatggtcactatctcttaaaaagaatatcaaacgattggagaacataattaattttgtacgctaatctttacatcataccttgagttgttca |
53108527 |
T |
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| Q |
201 |
gcaaatctctgacgttgcact |
221 |
Q |
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| T |
53108528 |
gcaaatctctgacgttgcact |
53108548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 53117828 - 53117917
Alignment:
| Q |
132 |
aatatcaaacgattggagaacataattaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcact |
221 |
Q |
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| T |
53117828 |
aatatcaaacaattagagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcact |
53117917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 53113608 - 53113660
Alignment:
| Q |
169 |
gctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcact |
221 |
Q |
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| T |
53113608 |
gctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcact |
53113660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 53126286 - 53126351
Alignment:
| Q |
155 |
aattaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcac |
220 |
Q |
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| T |
53126286 |
aattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcac |
53126351 |
T |
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