View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_low_3 (Length: 541)
Name: NF19621_low_3
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Original strand, 4510538 - 4511043
Alignment:
| Q |
7 |
cctcctcaaccatgttttaatgtcattggaaataagtggatttttcgtttgatgatgaacctaaatgtatccattttctggtataaagcatgattagttg |
106 |
Q |
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| T |
4510538 |
cctcctcaaccatgttttaatgtcattggaaataagtggaattttcgtctgatgatgaacctaaatgtatccattttctggtataaagcatgattagttg |
4510637 |
T |
|
| Q |
107 |
caaaaggttttcatcaacatcctagtaaatagtaatgattataaggaattcagccttgtcatcaaagcttcaaacaatcaaaatggtactgcagataaaa |
206 |
Q |
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| T |
4510638 |
caaaaggttttcatcaacatcctagtaaatagtaatgattataaggaattcagccttgtcatcaaagcttcaaacaatcaaaatggtactgcagataaaa |
4510737 |
T |
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| Q |
207 |
ttgtccaagagttgaaatctcaagaatatagacatcaaaaatgccttttctaaatggaactccaaatgaagaagattacatggcgcaacctcctggatta |
306 |
Q |
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| T |
4510738 |
ttgtc----------aatctcaagaatatagacatcaaaaatgccttt-ctaaatggaactccaaatgaagaagattacatggcgcaacctcctggatta |
4510826 |
T |
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| Q |
307 |
gttcactaatctcagtaattatgtttgcaagtttcactggtctaatcaagcccctcgtgcaag----gtacaaaacattacattacattcatcctgagta |
402 |
Q |
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| T |
4510827 |
gttcactaatctcagtaattatgtttgcaagtttcactggtctaatcaagcccctcgtgcaaggtacgtacaaaacattacattactttcatcctgagta |
4510926 |
T |
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| Q |
403 |
ttgcaccattgggtgcgccactacaaacctgttatcgttgcaaaatctcttgcttgaacttcgcatgcaacgccctcaaccaccatcaattttactgata |
502 |
Q |
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| T |
4510927 |
ttgcaccattgggtgcaccactacaaaactattatggttgcaaaaactcttgcttgaacttggcatgcaacgccctcaaccaccaacaattttactgata |
4511026 |
T |
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| Q |
503 |
acgttggcggcaattat |
519 |
Q |
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| T |
4511027 |
acgttggcggcaattat |
4511043 |
T |
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