View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19621_low_5 (Length: 429)
Name: NF19621_low_5
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 10586515 - 10586223
Alignment:
| Q |
21 |
atagtaacatcaacagatcttcgacctgggtattactcaaaaacatgtccacaagctgcaacaattgtgagagatgttatgagaaatgctcttaaaaaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10586515 |
atagtaacatcaacagatcttcgacctgggtattactcaaaaacatgtccacaagctgaaacaactgtgagagatgttatgagaaatgctcttaaaaaag |
10586416 |
T |
|
| Q |
121 |
aaccaagaagtgttgcctctgttatgagatttcaatttcatgattgctttgttaatgtatgttctctctttacctttcttataccataaaaattcaatat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10586415 |
aaccaagaagtgttgcctctgttatgagatttcaatttcatgattgctttgttaatgtatgttctctctttacctttcttataccatcaaaattcaatat |
10586316 |
T |
|
| Q |
221 |
tttcaatcagttgttttttagatttatgtatatctttttaatcgctacaaatattttgtcacataattgcaataaatatttttagttagacat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10586315 |
tttcaatcagttgttttttagatttatgtatatctttttaatcgctacaaatattttgtcacataattgcaataaatatttttagttagacat |
10586223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 10498736 - 10498897
Alignment:
| Q |
28 |
catcaacagatcttcgacctgggtattactcaaaaacatgtccacaagctgcaacaattgtgagagatgttatgagaaatgctcttaaaaaagaaccaag |
127 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
10498736 |
catcatcagatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaag |
10498835 |
T |
|
| Q |
128 |
aagtgttgcctctgttatgagatttcaatttcatgattgctttgttaatgtatgttctctct |
189 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10498836 |
aagtgttgcctctgttatgagacttcagtttcatgattgctttgttaatgtatgttctctct |
10498897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 10499578 - 10499632
Alignment:
| Q |
370 |
ctttggttgaatgagttgttgaatttgtgaaggggtgtgatggttctgtgctgct |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10499578 |
ctttggttgaatgagttgttgaatttgtgaaggggtgtgatggttctgtgttgct |
10499632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 10586176 - 10586122
Alignment:
| Q |
370 |
ctttggttgaatgagttgttgaatttgtgaaggggtgtgatggttctgtgctgct |
424 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10586176 |
ctttggttgaatgagttgattaatttgtgaaggggtgtgatggttctgtgttgct |
10586122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University