View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19621_low_6 (Length: 407)
Name: NF19621_low_6
Description: NF19621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19621_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 14535082 - 14534680
Alignment:
| Q |
1 |
caagagtgcaataatataaagtttctctacaaagttgttgaaattaaattccatatttagatgatttcagcaaattattcacattggtctggtttatcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14535082 |
caagagtgcaataatataaagtttctctacaaagttgttgaaattaaattccatatttagatgatttcagcaaattattcacattggtctggtttatcta |
14534983 |
T |
|
| Q |
101 |
ctttgttgaaatatcaagaagtttacgtgtcataaacatttcaaacatcatccgaacgtcgtcatctcctacaagatttaaggacccataccaaacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14534982 |
ctttgttgaaatatcaagaagtttacgtgtcataaacatttcaaacatcatccgaacgtcgtcatctcctacaagatttaaggacccataccaaacaagt |
14534883 |
T |
|
| Q |
201 |
ccttgcacaagagttgtacagtatcgataaacaagatcggtcacccttatggagttttctggttgaatctttgtctagatacattgaataaatccatcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14534882 |
ccttgcacaagagttgtacagtatcgataaacaagatcggtcacctttatggagttttctggttgaatctttgtctagatacattgaataaatccatcca |
14534783 |
T |
|
| Q |
301 |
atttgatgttttcttcacttcaaacaacaataagttattgcatgaaaatacaacaccttctgtgtatgtactttcaacatgtcttttgtaatattcttgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14534782 |
atttgatgttttcttcacttcaaacaacaataagttattgcatgaaaatacaacaccttctgtgtatgtactttcaacatgtcttttgtaatatacttgg |
14534683 |
T |
|
| Q |
401 |
aca |
403 |
Q |
| |
|
||| |
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|
| T |
14534682 |
aca |
14534680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 103 - 403
Target Start/End: Complemental strand, 22625716 - 22625415
Alignment:
| Q |
103 |
ttgttgaaatatcaagaagtttacgtgtcataaacatttcaaacatcatccgaacgtcgtcatctcctacaagatttaaggacccataccaaacaagtcc |
202 |
Q |
| |
|
||||||||||| ||||| | |||| | |||| ||||| |||||||||||| |||| ||||||| ||||||||||||||| ||| ||||||| |||||||| |
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|
| T |
22625716 |
ttgttgaaataccaagacgcttacatttcatgaacatgtcaaacatcatctgaacatcgtcatatcctacaagatttaatgactcataccagacaagtcc |
22625617 |
T |
|
| Q |
203 |
ttgcacaagagttgtacagtatcgataaacaagatcggtcacccttatggagttttctggttgaatctttgtctagatacattgaataaatccatccaat |
302 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| ||| ||||||||| |||| |||||||| | |
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| T |
22625616 |
ttgtgcaagagttgtagggtatcgataaacaagatccaccaccctcttggagttgtctggttgaatctttttctggatacattggataagtccatccagt |
22625517 |
T |
|
| Q |
303 |
ttgatg-ttttcttcacttcaaacaacaataagttattgcatgaaaatacaacaccttctgtgtatgtactttcaacatgtcttttgtaatattcttgga |
401 |
Q |
| |
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|||||| |||| ||||||| |||||| || | ||||||||||||||| ||||||||||||||| ||| |||| |||||| | | ||||||| |||||| |
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|
| T |
22625516 |
ttgatgttttttttcactttaaacaaggatgaattattgcatgaaaatgcaacaccttctgtgtctgtcctttgaacatggccgtcgtaatatacttgga |
22625417 |
T |
|
| Q |
402 |
ca |
403 |
Q |
| |
|
|| |
|
|
| T |
22625416 |
ca |
22625415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 103 - 403
Target Start/End: Complemental strand, 29211364 - 29211063
Alignment:
| Q |
103 |
ttgttgaaatatcaagaagtttacgtgtcataaacatttcaaacatcatccgaacgtcgtcatctcctacaagatttaaggacccataccaaacaagtcc |
202 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| ||||| ||||||| |||| |||| |||||||||| | ||||||| || ||| |||||||||||||||| |
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|
| T |
29211364 |
ttgttgaaataccaagatgtttacatgtcatgaacatctcaaacaccatctgaacatcgtcatctcatgcaagattcaatgactcataccaaacaagtcc |
29211265 |
T |
|
| Q |
203 |
ttgcacaagagttgtacagtatcgataaacaagatcggtcacccttatggagttttctggttgaatctttgtctagatacattgaataaatccatccaat |
302 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||| | ||||||||| |||| ||| |||||| |
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|
| T |
29211264 |
ttgtgaaagagttgtagggtatcgataaacaagatcgaccaccctcttggagttgtctggttgaatctttgtttggatacattggataagtccttccaat |
29211165 |
T |
|
| Q |
303 |
ttgatg-ttttcttcacttcaaacaacaataagttattgcatgaaaatacaacaccttctgtgtatgtactttcaacatgtcttttgtaatattcttgga |
401 |
Q |
| |
|
|||||| |||||||||||| || ||| || | |||||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||| |||||| |
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|
| T |
29211164 |
ttgatgtttttcttcactttaagcaaggatgaattattgcatgaaaatacaacacattctgtgtctgttctttcaacatgttcgttgtaatatacttgga |
29211065 |
T |
|
| Q |
402 |
ca |
403 |
Q |
| |
|
|| |
|
|
| T |
29211064 |
ca |
29211063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 103 - 403
Target Start/End: Complemental strand, 29174508 - 29174208
Alignment:
| Q |
103 |
ttgttgaaatatcaagaagtttacgtgtcataaacatttcaaacatcatccgaacgtcgtcatctcctacaagatttaaggacccataccaaacaagtcc |
202 |
Q |
| |
|
||||||||||| ||||| |||||| ||| | ||||| |||||||||||| |||||||||||||||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
29174508 |
ttgttgaaataccaagatgtttacatgttaagaacatctcaaacatcatctaaacgtcgtcatctcctgcaagattccacgactcataccaaacaagtc- |
29174410 |
T |
|
| Q |
203 |
ttgcacaagagttgtacagtatcgataaacaagatcggtcacccttatggagttttctggttgaatctttgtctagatacattgaataaatccatccaat |
302 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| | ||||||||| |||| | | |||||| |
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|
| T |
29174409 |
ttgtgaaagagttgtagggtatcgataaataagatcgaccaccctcttggagttgtctggttgaatctttgtttggatacattggataagtgcttccaat |
29174310 |
T |
|
| Q |
303 |
ttgatg-ttttcttcacttcaaacaacaataagttattgcatgaaaatacaacaccttctgtgtatgtactttcaacatgtcttttgtaatattcttgga |
401 |
Q |
| |
|
|||||| |||||||||||| || ||| || | ||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||| |||||| |
|
|
| T |
29174309 |
ttgatgtttttcttcactttaagcaaggatgaattattgcatgagaatacaacaccttctgtgtctgttctttcaacatgtccactgtaatatacttgga |
29174210 |
T |
|
| Q |
402 |
ca |
403 |
Q |
| |
|
|| |
|
|
| T |
29174209 |
ca |
29174208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 103 - 381
Target Start/End: Complemental strand, 25942133 - 25941854
Alignment:
| Q |
103 |
ttgttgaaatatcaagaagtttacgtgtcataaacatttcaaacatcatccgaacgtcgtcatctcctacaagatttaaggacccataccaaacaagtcc |
202 |
Q |
| |
|
||||||||||| ||||| | |||| |||||| ||||| ||||||||||| |||| ||||||||||||||||||||||| ||| || |||| |||||||| |
|
|
| T |
25942133 |
ttgttgaaataccaagacgcttacctgtcatgaacatgtcaaacatcatttgaacatcgtcatctcctacaagatttaatgactcaaaccagacaagtcc |
25942034 |
T |
|
| Q |
203 |
ttgcacaagagttgtacagtatcgataaacaagatcggtcacccttatggagttttctggttgaatctttgtctagatacattgaataaatccatccaat |
302 |
Q |
| |
|
||| ||||||||||| |||||||||||||| ||| |||||| ||||||| ||||||||||||||| ||| |||||| || |||| ||||||| | |
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|
| T |
25942033 |
ttgtgcaagagttgtagggtatcgataaacaatatccaccaccctcttggagttgtctggttgaatctttttctggatacactggataagtccatcctgt |
25941934 |
T |
|
| Q |
303 |
ttgatg-ttttcttcacttcaaacaacaataagttattgcatgaaaatacaacaccttctgtgtatgtactttcaacatg |
381 |
Q |
| |
|
|||||| |||||||||||| |||||| || | ||||||||||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
25941933 |
ttgatgtttttcttcactttaaacaaggatgaattattgcatgaaaatacaacaccttctgtgtctgtcctttgaacatg |
25941854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 383
Target Start/End: Original strand, 30683631 - 30683848
Alignment:
| Q |
163 |
catctcctacaagatttaaggacccataccaaacaagtccttgcacaagagttgtacagtatcgataaacaagatcggtcacccttatggagttttctgg |
262 |
Q |
| |
|
||||||| | ||||||||| || |||||||||||| || ||| |||||||||||| ||||| ||||||||||| | |||| | | |||| ||| |
|
|
| T |
30683631 |
catctccaataagatttaacaactcataccaaacaattctttgaacaagagttgtagggtatcaataaacaagattga-caccttatttaagttgattgg |
30683729 |
T |
|
| Q |
263 |
ttgaatctttgtctagatacattgaataaatccatccaatttgatgtttt-cttcacttcaaacaacaataagttattgcatgaaaatacaacaccttct |
361 |
Q |
| |
|
|||||||||||||| ||||||||| | || || || || ||||||||||| |||| || ||||| |||| || |||||||||||| ||||||||||| |
|
|
| T |
30683730 |
ttgaatctttgtctggatacattggacaagtctatgcagtttgatgtttttcttcgatt--aacaaggataaattgttgcatgaaaatgcaacaccttct |
30683827 |
T |
|
| Q |
362 |
gtgtatgtactttcaacatgtc |
383 |
Q |
| |
|
|| | ||| ||||||||||||| |
|
|
| T |
30683828 |
gt-tttgtcctttcaacatgtc |
30683848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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