View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19622_high_15 (Length: 271)
Name: NF19622_high_15
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_high_15 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 33442127 - 33441857
Alignment:
| Q |
1 |
atggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442127 |
atggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggta |
33442028 |
T |
|
| Q |
101 |
catttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442027 |
catttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctcca |
33441928 |
T |
|
| Q |
201 |
tcaccatcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttcc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33441927 |
tcaccatcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttcc |
33441857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 33452347 - 33452077
Alignment:
| Q |
1 |
atggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452347 |
atggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggta |
33452248 |
T |
|
| Q |
101 |
catttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452247 |
catttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctcca |
33452148 |
T |
|
| Q |
201 |
tcaccatcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttcc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452147 |
tcaccatcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttcc |
33452077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 33399811 - 33399629
Alignment:
| Q |
1 |
atggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggta |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| | ||||||| |||||||| |||||||| ||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
33399811 |
atggaagtgatttccagagttgctcagttccttgggcagcaccagtgttaacaagtggacatgataaaattgcattgacaacctatgggagaagatggta |
33399712 |
T |
|
| Q |
101 |
catttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccag |
183 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
33399711 |
catttcaggtgttgccaatcactgcgaaaatggacaaaagcttttcataaatgttttaccaaaacaagatggttggtatccag |
33399629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33395924 - 33395729
Alignment:
| Q |
1 |
atggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggta |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||| || |||||| ||||||||||||||||| |||| |||| || | ||||||||||| ||||||||||| |
|
|
| T |
33395924 |
atggaagtgatttccagagttgctcaattccttggagagcaccagtgttaactagtggacatgatacaattttattgacaacctatggaagaagatggta |
33395825 |
T |
|
| Q |
101 |
catttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
196 |
Q |
| |
|
||||||| ||| | | |||||||| | ||| |||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
33395824 |
catttcaggtgctgctcatcactgcaatcttggccaaaagcttttcataaacgtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University