View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_high_17 (Length: 250)
Name: NF19622_high_17
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 42799931 - 42799712
Alignment:
| Q |
15 |
tactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgttataagttttcaa |
114 |
Q |
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| T |
42799931 |
tactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccatgataagttctgttataagttttcaa |
42799832 |
T |
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| Q |
115 |
cgtgggtt--gatggcggtgtttaaggatgttgaagtagagatactgcatgttgattgaagtattccttcacgtaacaaataaatagaaatacaataaac |
212 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799831 |
cgtgggttttgatggcagtgtttaaggatgttgaagtagagatactgcatgttgattgaagtattccttcacgtaacaaataaatagaaatacaataaac |
42799732 |
T |
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| Q |
213 |
agaatattgacaagcatact |
232 |
Q |
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|||||||||||||||||||| |
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| T |
42799731 |
agaatattgacaagcatact |
42799712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 42803098 - 42803017
Alignment:
| Q |
22 |
actttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgtta |
103 |
Q |
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| T |
42803098 |
actttgaaatgcggtttctgtcctatggtgtgataagtggtattcaaatgtattttcccaatcattatgataagttctgtta |
42803017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 25514410 - 25514500
Alignment:
| Q |
15 |
tactagcactttgaaatgtggtttctgtcctatggtgtgataa--gcggtattcaaatgtattttccaaatcaccgtgataagttctgtta |
103 |
Q |
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| T |
25514410 |
tactagcactttgaaatgtggtttctgtcgtatggtgtgataaattctgtattcaaatgtattttcccaatcattgtgataatctctgtta |
25514500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 25520965 - 25520875
Alignment:
| Q |
15 |
tactagcactttgaaatgtggtttctgtcctatggtgtgataag--cggtattcaaatgtattttccaaatcaccgtgataagttctgtta |
103 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
25520965 |
tactagcactttgaaatgtgatttctgtcgtatggtgtgataagttatgtattcaaatgtattttcccaatcattgtgataatctctgtta |
25520875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 27906797 - 27906706
Alignment:
| Q |
14 |
atactagcactttgaaatgtggtttctgtcctatggtgtgataagcggtattcaaatgtattttccaaatcaccgtgataagttctgttata |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
27906797 |
atactagcactttgaaatgtggtttctgtcctgtggtatgataagtggtattcaaatgtattttaccaatcattgtgataagttctgttata |
27906706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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