View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19622_high_19 (Length: 230)
Name: NF19622_high_19
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42799940 - 42800152
Alignment:
| Q |
1 |
cacaagtacatgctgcagaaatgagttggaaatgtaatataaatttgaaaactaatataacagaaattactagtgttttaatatctcaaaatcattgtaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42799940 |
cacaagtacatgctgcacaaatgagttggaaatgtaatataaatttgaaaactaatataacagaaattactagtgttttaatatctcaaaatcattgtaa |
42800039 |
T |
|
| Q |
101 |
aagcaacaagataagctttgactaattaattcagaaacagatagtgacattttggattcaaacatgagaaaaaagtattgccttttggaactcaaaacac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
42800040 |
aagcaacaagataagctttgactaattaattcagaaacagatagtgacattttggattcaaacatgacaaaaaagtattgtcttttggaactcaaaacac |
42800139 |
T |
|
| Q |
201 |
atatatttaagtt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42800140 |
atatatttaagtt |
42800152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25514398 - 25514184
Alignment:
| Q |
1 |
cacaagtacatgctgcagaaatgagttggaaatgtaatataaatttgaaaactaatataacagaaattactagtgttttaatatctcaaaatcattgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| ||| ||| |
|
|
| T |
25514398 |
cacaagtacatgctgcagaaatgagttggaaatgtaatttaaatttgaaaactaatataacagaacttgctagtgttttgatatctcaaaataattctaa |
25514299 |
T |
|
| Q |
101 |
aagcaacaagataagctttgactaattaattcagaaacagatagtgacattttggattcaaacatgagaaaaaagtattgccttttggaactcaaaacac |
200 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| | ||||||| || || || |||||||||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
25514298 |
aagcaacaaaataggctttgactaattaatttataaacagaaagctactgttcggattcaaacatgacaaaaaagtaatgtcttttggaactcaaaacac |
25514199 |
T |
|
| Q |
201 |
atatatttaagttca |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25514198 |
atatatttaagttca |
25514184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 25520977 - 25521176
Alignment:
| Q |
16 |
cagaaatgagttggaaatgtaatataaatttgaaaactaatataacagaaattactagtgttttaatatctcaaaatcattgtaaaagcaacaagataag |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| ||| |||||||||||| ||| | |
|
|
| T |
25520977 |
cagaaatgagttggaaatgtaatttaaatttgaaaactaatataacagaacttgctagtgttttgatatctcaaaataattctaaaagcaacaaaatagg |
25521076 |
T |
|
| Q |
116 |
ctttgactaattaattcagaaacagatagtgacattttggattcaaacatgagaaaaaagtattgccttttggaactcaaaacacatatatttaagttca |
215 |
Q |
| |
|
|||||||||||||||| | ||||||| || || || |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
25521077 |
ctttgactaattaatttataaacagaaagctactgttcggattcaaacatgacaaaaaagtaatgtcttttggaactcaaaacacatatatttaagttca |
25521176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 42803104 - 42803175
Alignment:
| Q |
70 |
ctagtgttttaatatctcaaaatcattgtaaaagcaacaagataagctttgactaattaattcagaaacaga |
141 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || ||| |||| |||||||||||||| ||||||| |
|
|
| T |
42803104 |
ctagtgttttgatatctcaaaatcattgtaaaagcattaaaataggcttcgactaattaattcataaacaga |
42803175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 42803219 - 42803277
Alignment:
| Q |
151 |
tttggattcaaacatgagaaaaaagtattgccttttggaactcaaaacacatatattta |
209 |
Q |
| |
|
||||||||||||| ||| ||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
42803219 |
tttggattcaaacttgacaaaaaagtaatgtcttttagaactcaaaacacatatattta |
42803277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 8763909 - 8763865
Alignment:
| Q |
171 |
aaaagtattgccttttggaactcaaaacacatatatttaagttca |
215 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
8763909 |
aaaagtaatgtcttttggaactcaaaacgcatatatttaagttca |
8763865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 8776671 - 8776715
Alignment:
| Q |
171 |
aaaagtattgccttttggaactcaaaacacatatatttaagttca |
215 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
8776671 |
aaaagtaatgtcttttggaactcaaaacgcatatatttaagttca |
8776715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 27906804 - 27907017
Alignment:
| Q |
1 |
cacaagtacatgctgcagaaatgagttggaaatgtaatataaatttgaaaactaatataacagaaattactagtgttttaatatctcaaaatcattgtaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||| |
|
|
| T |
27906804 |
cacaagcacatgctgcagaaatgagttggaaatgtaatataaatttgaaaactaatataacagaacttgctagtgttttgatacctcaaaatcattgtaa |
27906903 |
T |
|
| Q |
101 |
aagcaacaagataagctttgactaattaattcagaaacagatagtgacattttggattcaaacatgagaaaaaagtattgccttttggaactcaaaacac |
200 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||| |||| || || || || ||||||||||||| || |||||| || ||||||||||||||||||| |
|
|
| T |
27906904 |
aagcaacaaaataggcttcgactaattaattcataaacggaaagctacggttcagattcaaacatgacaagaaagtaatgtcttttggaactcaaaacac |
27907003 |
T |
|
| Q |
201 |
atatatttaagttcat |
216 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27907004 |
--atatttaagttcat |
27907017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7387760 - 7387543
Alignment:
| Q |
1 |
cacaagtacatgctgcagaaatgagttggaaatgtaatataaatttgaaaactaatataacagaaattactagtgttttaatatctcaaaatcattgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| || ||| |||||||||||||||| |
|
|
| T |
7387760 |
cacaagtacatgctgcagaaatgagttggaaatgtaatataaatttgaaaactaatatagcagaacttgctagtgtattgatacctcaaaatcattgtaa |
7387661 |
T |
|
| Q |
101 |
aagcaacaagataagctttgactaattaattcagaaacagatagtgacattttggattcaaac-atga-gaaaaaagtattgccttttggaactcaaaac |
198 |
Q |
| |
|
||||||||| ||| |||| ||||||| |||||| |||| || || || || ||||||||| |||| ||||||||| || |||||||||||||||| |
|
|
| T |
7387660 |
aagcaacaaaataggcttcgactaatcaattcataaacggaaagctacggttcagattcaaactatgacaaaaaaagtaatgtgttttggaactcaaaac |
7387561 |
T |
|
| Q |
199 |
acatatatttaagttcat |
216 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7387560 |
acatatatttaagttcat |
7387543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University