View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_high_4 (Length: 419)
Name: NF19622_high_4
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 21851100 - 21850702
Alignment:
| Q |
1 |
ggtctatatatagaggaatgaaaggacgtagttgtatgaatatttgtatagaatataatgtaatattcaaatagaagtcttgttcaaaaaatattcaaat |
100 |
Q |
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| T |
21851100 |
ggtctatatatagaggaatgaaaggacgtagttgtatgaatatttggatagaatataatgtaatattcaaatagaagtcttgttcaaaaaatattcaaat |
21851001 |
T |
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| Q |
101 |
tgaagatgatgaactcaacattgttgtcattgaaatataatagtagttagaacaactttagagtggtgtcaaagacatcctattttgtttatcaccttct |
200 |
Q |
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| T |
21851000 |
tgaagatga---actcaacattgttgacattgaactataatagtagttggaacaactttagagtggtgtcaaagacatcctattttgtttatcaccttct |
21850904 |
T |
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| Q |
201 |
tgtgcaagtcaaaattccttaataatttttatactattattatgattattagttatagttttaaatctctttcattgtgtatataagggtgcatttaaat |
300 |
Q |
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| T |
21850903 |
tgtgcaagtcaaaattccttaataatttttatactattattatgattattagttatagttttaattctctttcattgtgtatataagggtgcatttaaat |
21850804 |
T |
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| Q |
301 |
ggaaatgaattgaataatatttgagtagatcattggtcaaatgtagctctctctcaactaatgttcttcttgttgtcaaagtaagagggttctgtctaat |
400 |
Q |
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| T |
21850803 |
ggaaatgaattgaataatatttgagtagatcattggtcaaatgtagctctctctcaaccaatgttcttcttgttgtcaaagtaagagggttctgtctaat |
21850704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 21181083 - 21180980
Alignment:
| Q |
111 |
gaactcaacattgttgtcattgaaatataatagtagttagaacaactttagagtggtgtcaaagacatcctattttg-tttatcaccttcttgtgcaagt |
209 |
Q |
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| T |
21181083 |
gaactaaacattactgtcattgaacaagactagtagttagaacaactttagagtagtgtcaaagacatccaatttagttttatctccttcttgtctaagt |
21180984 |
T |
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| Q |
210 |
caaa |
213 |
Q |
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|||| |
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| T |
21180983 |
caaa |
21180980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 21197123 - 21197079
Alignment:
| Q |
146 |
gttagaacaactttagagtggtgtcaaagacatcctattttgttt |
190 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
21197123 |
gttagaacaactttagagtggtgtcaaagacattcaattttgttt |
21197079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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