View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19622_high_5 (Length: 415)

Name: NF19622_high_5
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19622_high_5
NF19622_high_5
[»] chr3 (50 HSPs)
chr3 (18-356)||(53620038-53620376)
chr3 (141-242)||(47789554-47789655)
chr3 (139-242)||(30131994-30132096)
chr3 (193-245)||(3707030-3707082)
chr3 (139-241)||(29623106-29623210)
chr3 (141-242)||(34306019-34306120)
chr3 (141-248)||(35282961-35283066)
chr3 (193-242)||(41962083-41962132)
chr3 (193-242)||(43237215-43237264)
chr3 (140-245)||(32858700-32858807)
chr3 (139-173)||(517806-517840)
chr3 (136-170)||(53664421-53664455)
chr3 (193-242)||(3043226-3043275)
chr3 (193-242)||(33982827-33982876)
chr3 (193-242)||(47714780-47714829)
chr3 (193-242)||(49860760-49860809)
chr3 (193-242)||(55439508-55439557)
chr3 (145-245)||(27921838-27921941)
chr3 (138-170)||(37674310-37674342)
chr3 (133-173)||(43237521-43237561)
chr3 (144-248)||(3537083-3537187)
chr3 (139-170)||(36598122-36598153)
chr3 (193-244)||(38515175-38515226)
chr3 (269-312)||(39114966-39115009)
chr3 (136-167)||(47359250-47359281)
chr3 (141-245)||(1133029-1133135)
chr3 (139-173)||(2927731-2927765)
chr3 (139-173)||(3537437-3537471)
chr3 (193-235)||(36796347-36796389)
chr3 (139-173)||(38456485-38456519)
chr3 (139-173)||(39499429-39499463)
chr3 (139-173)||(47789262-47789296)
chr3 (139-172)||(1132756-1132789)
chr3 (193-242)||(23163448-23163497)
chr3 (193-242)||(24242200-24242249)
chr3 (141-170)||(38639471-38639500)
chr3 (193-242)||(43007604-43007653)
chr3 (141-170)||(44400590-44400619)
chr3 (193-242)||(44412262-44412311)
chr3 (193-242)||(46312529-46312578)
chr3 (136-185)||(47434107-47434156)
chr3 (141-170)||(53664769-53664798)
chr3 (140-173)||(55439816-55439849)
chr3 (141-173)||(40119061-40119093)
chr3 (141-173)||(44411972-44412004)
chr3 (137-173)||(45555505-45555541)
chr3 (138-170)||(48908707-48908739)
chr3 (141-173)||(48909050-48909082)
chr3 (141-173)||(49861067-49861099)
chr3 (141-185)||(54126155-54126199)
[»] chr1 (63 HSPs)
chr1 (138-251)||(50586917-50587029)
chr1 (139-242)||(27499854-27499957)
chr1 (141-246)||(17556540-17556644)
chr1 (141-244)||(52073553-52073657)
chr1 (138-245)||(36886739-36886846)
chr1 (141-238)||(1523465-1523563)
chr1 (141-242)||(40707306-40707407)
chr1 (139-248)||(49103054-49103162)
chr1 (139-242)||(38794840-38794943)
chr1 (136-242)||(1688324-1688425)
chr1 (193-242)||(23871571-23871620)
chr1 (141-242)||(47905797-47905898)
chr1 (139-240)||(51246673-51246774)
chr1 (141-245)||(26940478-26940582)
chr1 (194-248)||(47742456-47742510)
chr1 (136-243)||(50599068-50599175)
chr1 (193-242)||(13255268-13255317)
chr1 (194-242)||(32295569-32295617)
chr1 (194-242)||(33991466-33991514)
chr1 (139-248)||(36269613-36269722)
chr1 (141-242)||(43572060-43572160)
chr1 (141-185)||(45565348-45565392)
chr1 (139-173)||(34154505-34154539)
chr1 (193-242)||(2926042-2926091)
chr1 (193-242)||(17688262-17688311)
chr1 (139-248)||(28718893-28719003)
chr1 (141-185)||(9595780-9595824)
chr1 (141-238)||(12293682-12293779)
chr1 (141-185)||(39179271-39179315)
chr1 (149-242)||(39889766-39889859)
chr1 (139-170)||(2909019-2909050)
chr1 (138-242)||(11017468-11017572)
chr1 (134-169)||(18421086-18421121)
chr1 (139-170)||(40136449-40136480)
chr1 (141-172)||(41432949-41432980)
chr1 (138-185)||(50402961-50403008)
chr1 (137-225)||(50476419-50476502)
chr1 (193-251)||(7915437-7915495)
chr1 (139-242)||(13061508-13061611)
chr1 (139-185)||(15464030-15464076)
chr1 (139-173)||(29091957-29091991)
chr1 (135-185)||(30538585-30538634)
chr1 (139-173)||(33991773-33991807)
chr1 (202-244)||(36385275-36385317)
chr1 (139-185)||(50247815-50247861)
chr1 (139-173)||(51303350-51303384)
chr1 (141-174)||(666253-666286)
chr1 (141-170)||(5584387-5584416)
chr1 (141-170)||(5584744-5584773)
chr1 (197-242)||(14152628-14152673)
chr1 (193-242)||(26757263-26757312)
chr1 (267-312)||(33324657-33324702)
chr1 (139-172)||(41432578-41432611)
chr1 (193-242)||(42162161-42162210)
chr1 (194-242)||(938346-938394)
chr1 (141-169)||(27255081-27255109)
chr1 (138-170)||(28727515-28727547)
chr1 (141-173)||(32299334-32299366)
chr1 (141-173)||(32300286-32300318)
chr1 (141-173)||(37649793-37649825)
chr1 (141-173)||(38795196-38795228)
chr1 (141-169)||(47742408-47742436)
chr1 (265-309)||(50476560-50476604)
[»] chr6 (18 HSPs)
chr6 (141-248)||(26713735-26713842)
chr6 (137-242)||(24734755-24734855)
chr6 (139-225)||(2365722-2365808)
chr6 (267-309)||(20820545-20820587)
chr6 (193-242)||(1029217-1029266)
chr6 (193-242)||(29241941-29241990)
chr6 (134-173)||(5825563-5825602)
chr6 (145-225)||(26481252-26481332)
chr6 (265-312)||(26713885-26713932)
chr6 (135-173)||(4909692-4909730)
chr6 (267-309)||(29054601-29054643)
chr6 (139-173)||(29241649-29241683)
chr6 (143-173)||(32719552-32719582)
chr6 (193-238)||(14275910-14275955)
chr6 (140-173)||(33590504-33590537)
chr6 (145-173)||(1567157-1567185)
chr6 (138-170)||(4584307-4584339)
chr6 (193-241)||(5825257-5825305)
[»] chr2 (44 HSPs)
chr2 (143-248)||(16625883-16625988)
chr2 (141-248)||(16519191-16519297)
chr2 (140-241)||(3039057-3039158)
chr2 (139-248)||(4003298-4003407)
chr2 (137-242)||(12964080-12964185)
chr2 (141-242)||(18780254-18780357)
chr2 (143-230)||(11522286-11522373)
chr2 (193-241)||(19382802-19382850)
chr2 (193-245)||(36030738-36030790)
chr2 (141-242)||(44137029-44137125)
chr2 (195-242)||(25960718-25960765)
chr2 (141-241)||(32761383-32761483)
chr2 (139-173)||(11514914-11514948)
chr2 (139-173)||(16813506-16813540)
chr2 (139-173)||(16852785-16852819)
chr2 (136-173)||(6655985-6656022)
chr2 (267-312)||(15803212-15803257)
chr2 (136-173)||(18826044-18826081)
chr2 (139-217)||(31550382-31550460)
chr2 (140-173)||(43572725-43572758)
chr2 (138-170)||(1365057-1365089)
chr2 (141-242)||(30312513-30312609)
chr2 (138-170)||(34757830-34757862)
chr2 (137-173)||(37201792-37201828)
chr2 (195-242)||(6711940-6711987)
chr2 (139-242)||(14008435-14008539)
chr2 (138-185)||(42644864-42644911)
chr2 (141-170)||(1364715-1364744)
chr2 (141-170)||(5322288-5322317)
chr2 (193-242)||(8555884-8555933)
chr2 (141-170)||(11515278-11515307)
chr2 (197-246)||(12941905-12941953)
chr2 (193-242)||(18826340-18826389)
chr2 (193-242)||(32243399-32243448)
chr2 (141-170)||(39204824-39204853)
chr2 (139-172)||(44137309-44137342)
chr2 (194-242)||(8411038-8411086)
chr2 (141-173)||(13018655-13018687)
chr2 (141-173)||(14008147-14008179)
chr2 (193-245)||(31082740-31082792)
chr2 (139-167)||(32761112-32761140)
chr2 (194-242)||(36567386-36567434)
chr2 (145-173)||(37194142-37194170)
chr2 (194-242)||(38023553-38023601)
[»] chr4 (52 HSPs)
chr4 (139-242)||(7182299-7182402)
chr4 (140-242)||(38317337-38317439)
chr4 (139-242)||(41363920-41364023)
chr4 (143-245)||(35959072-35959172)
chr4 (141-248)||(46177029-46177136)
chr4 (193-246)||(54205760-54205813)
chr4 (141-242)||(24279786-24279887)
chr4 (139-242)||(16535561-16535664)
chr4 (193-242)||(37756821-37756870)
chr4 (193-242)||(48830923-48830972)
chr4 (139-241)||(54806345-54806447)
chr4 (141-242)||(38365901-38366002)
chr4 (139-248)||(52636631-52636740)
chr4 (195-242)||(17873122-17873169)
chr4 (139-185)||(675241-675287)
chr4 (143-242)||(13270381-13270475)
chr4 (271-312)||(28880029-28880070)
chr4 (136-173)||(31530254-31530291)
chr4 (136-173)||(45899513-45899550)
chr4 (139-172)||(52430732-52430765)
chr4 (193-242)||(56504576-56504625)
chr4 (194-242)||(904122-904170)
chr4 (141-242)||(3127119-3127219)
chr4 (139-251)||(21081215-21081332)
chr4 (138-185)||(18964893-18964940)
chr4 (136-179)||(29576305-29576348)
chr4 (138-173)||(38137011-38137046)
chr4 (138-173)||(41844666-41844701)
chr4 (265-312)||(48417612-48417659)
chr4 (139-173)||(20534158-20534192)
chr4 (139-185)||(21357978-21358024)
chr4 (139-173)||(22845048-22845082)
chr4 (139-173)||(29114411-29114445)
chr4 (139-184)||(8827984-8828029)
chr4 (267-312)||(13984976-13985021)
chr4 (140-185)||(31340658-31340703)
chr4 (193-242)||(31529943-31529992)
chr4 (136-173)||(38366257-38366294)
chr4 (139-172)||(43793957-43793990)
chr4 (194-251)||(45022818-45022875)
chr4 (267-312)||(47063716-47063761)
chr4 (193-246)||(48620204-48620256)
chr4 (139-172)||(48620512-48620545)
chr4 (139-168)||(55813794-55813823)
chr4 (193-241)||(13269877-13269925)
chr4 (145-185)||(21295940-21295980)
chr4 (141-173)||(27485419-27485451)
chr4 (141-242)||(31187202-31187303)
chr4 (145-185)||(31419060-31419100)
chr4 (141-185)||(32648822-32648866)
chr4 (141-173)||(33500392-33500424)
chr4 (193-245)||(45971486-45971538)
[»] chr7 (38 HSPs)
chr7 (139-245)||(3658616-3658722)
chr7 (141-241)||(33406741-33406841)
chr7 (137-248)||(38505436-38505547)
chr7 (193-242)||(23620901-23620950)
chr7 (193-242)||(33113749-33113798)
chr7 (193-242)||(34652159-34652208)
chr7 (265-309)||(19644323-19644367)
chr7 (138-242)||(36747165-36747270)
chr7 (139-242)||(7667272-7667376)
chr7 (139-242)||(5968151-5968253)
chr7 (193-242)||(28437650-28437699)
chr7 (193-242)||(42620459-42620508)
chr7 (139-183)||(1277802-1277846)
chr7 (141-173)||(4058316-4058348)
chr7 (141-173)||(16805744-16805776)
chr7 (139-183)||(46611967-46612011)
chr7 (138-173)||(34651868-34651903)
chr7 (139-173)||(30081236-30081270)
chr7 (138-172)||(33113458-33113492)
chr7 (140-170)||(38137821-38137851)
chr7 (138-167)||(17884364-17884393)
chr7 (193-242)||(19644225-19644274)
chr7 (137-170)||(33188024-33188057)
chr7 (139-172)||(33871776-33871809)
chr7 (144-185)||(36747519-36747560)
chr7 (141-173)||(7666982-7667014)
chr7 (145-173)||(15749126-15749154)
chr7 (145-173)||(19791563-19791591)
chr7 (141-173)||(28437359-28437391)
chr7 (141-173)||(33872231-33872263)
chr7 (141-173)||(38236023-38236055)
chr7 (268-312)||(38505346-38505390)
chr7 (141-173)||(41471377-41471409)
chr7 (141-173)||(42382926-42382958)
chr7 (137-173)||(42854116-42854152)
chr7 (141-185)||(43189076-43189120)
chr7 (141-173)||(46442581-46442613)
chr7 (156-245)||(46745692-46745780)
[»] chr5 (42 HSPs)
chr5 (141-242)||(35700932-35701033)
chr5 (142-240)||(35704583-35704681)
chr5 (193-242)||(38302461-38302510)
chr5 (140-248)||(10437857-10437965)
chr5 (141-242)||(10295354-10295456)
chr5 (145-242)||(27480278-27480375)
chr5 (198-241)||(4649096-4649139)
chr5 (141-248)||(35708855-35708962)
chr5 (139-173)||(1935241-1935275)
chr5 (193-242)||(1658101-1658150)
chr5 (140-173)||(13569260-13569293)
chr5 (193-242)||(26149527-26149576)
chr5 (267-312)||(32125275-32125320)
chr5 (138-170)||(5772545-5772577)
chr5 (141-173)||(6491086-6491118)
chr5 (137-173)||(32824531-32824567)
chr5 (142-173)||(9096195-9096226)
chr5 (265-312)||(9096341-9096388)
chr5 (138-173)||(18670902-18670937)
chr5 (195-233)||(6816258-6816296)
chr5 (139-173)||(10295717-10295751)
chr5 (136-170)||(10842922-10842956)
chr5 (139-173)||(17093128-17093162)
chr5 (139-173)||(25598585-25598619)
chr5 (141-248)||(35683575-35683682)
chr5 (139-173)||(38120011-38120045)
chr5 (139-173)||(39649440-39649474)
chr5 (193-242)||(2020905-2020954)
chr5 (267-312)||(3676517-3676562)
chr5 (196-245)||(6491427-6491476)
chr5 (139-172)||(6620471-6620504)
chr5 (139-172)||(9684607-9684640)
chr5 (267-312)||(19389830-19389875)
chr5 (140-169)||(35683290-35683319)
chr5 (141-185)||(1658395-1658439)
chr5 (138-170)||(10376994-10377026)
chr5 (193-225)||(13449865-13449897)
chr5 (272-312)||(13450508-13450548)
chr5 (194-242)||(17092823-17092871)
chr5 (138-170)||(21571929-21571961)
chr5 (140-172)||(33718413-33718445)
chr5 (141-169)||(43496379-43496407)
[»] chr8 (34 HSPs)
chr8 (139-242)||(34272384-34272488)
chr8 (141-242)||(3404681-3404782)
chr8 (141-242)||(1942141-1942241)
chr8 (138-242)||(37659639-37659743)
chr8 (139-242)||(36906062-36906160)
chr8 (142-242)||(6691-6791)
chr8 (141-248)||(79715-79823)
chr8 (193-248)||(39193855-39193910)
chr8 (139-185)||(21262740-21262786)
chr8 (139-172)||(1839636-1839669)
chr8 (193-242)||(4734604-4734653)
chr8 (137-173)||(1941864-1941900)
chr8 (140-172)||(23932735-23932767)
chr8 (141-185)||(34148398-34148442)
chr8 (193-241)||(34304640-34304688)
chr8 (141-185)||(42651519-42651563)
chr8 (139-174)||(26772817-26772852)
chr8 (194-241)||(31297456-31297503)
chr8 (139-251)||(35376727-35376839)
chr8 (143-185)||(3635641-3635683)
chr8 (139-169)||(27085218-27085248)
chr8 (144-219)||(31149799-31149874)
chr8 (141-170)||(1839999-1840028)
chr8 (193-246)||(1840309-1840362)
chr8 (145-178)||(40677032-40677065)
chr8 (137-170)||(41866296-41866329)
chr8 (139-171)||(1111305-1111337)
chr8 (138-174)||(9309722-9309758)
chr8 (141-169)||(12319123-12319151)
chr8 (139-183)||(13406299-13406343)
chr8 (141-173)||(21174034-21174066)
chr8 (198-242)||(29611921-29611965)
chr8 (141-173)||(33230864-33230896)
chr8 (141-173)||(36906420-36906452)
[»] scaffold1163 (1 HSPs)
scaffold1163 (142-245)||(1931-2034)
[»] scaffold0051 (2 HSPs)
scaffold0051 (139-173)||(6935-6969)
scaffold0051 (139-173)||(7918-7952)
[»] scaffold0036 (1 HSPs)
scaffold0036 (140-248)||(82666-82775)
[»] scaffold0717 (1 HSPs)
scaffold0717 (139-173)||(1810-1844)
[»] scaffold0248 (1 HSPs)
scaffold0248 (143-173)||(373-403)
[»] scaffold0028 (2 HSPs)
scaffold0028 (139-173)||(35271-35305)
scaffold0028 (141-242)||(35562-35663)
[»] scaffold0388 (1 HSPs)
scaffold0388 (144-173)||(6940-6969)
[»] scaffold0031 (2 HSPs)
scaffold0031 (137-170)||(93309-93342)
scaffold0031 (141-170)||(93676-93705)
[»] scaffold0136 (1 HSPs)
scaffold0136 (141-173)||(2199-2231)
[»] scaffold0128 (1 HSPs)
scaffold0128 (137-173)||(26247-26283)
[»] scaffold0061 (1 HSPs)
scaffold0061 (138-170)||(46555-46587)
[»] scaffold0017 (1 HSPs)
scaffold0017 (138-170)||(152200-152232)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 53620038 - 53620376
Alignment:
Q  18 tgacacacttgaattctagcagcgttattggtactgtgaatctagtagtaaatgaaagaactcaagaaacacagagtttcagagagaatgaatatgactg 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53620038 tgacacacttgaattctagcagtgttattggtactgtgaatctagtagtaaatgaaagaactcaagaaaaacagagtttcagagagaatgaatatgactg 53620137  T
Q  118 cataatacatccacttaatctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaataga 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||       |||||||||||||||||||||||||    
T  53620138 cataatacattcacttaatctttaggctttgtttgcgagtttggaggggaagggaggtgagggctttggaaaaaaggaaggagcaagtgggagaaataga 53620237  T
Q  218 ggacattgagaggagagggctttggggggttcataatacaaaatctttcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaac 317  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||     
T  53620238 ggacattgagagcggagggctttgggggtttcataatacaaaatctttcaaaaattgtattggatgaggattttagagggtttatatgaattattaaaat 53620337  T
Q  318 taaaacatactaattgaaagaattaatttatcattctct 356  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  53620338 taaaacatactaattgtaagaattaatttatcattctct 53620376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 47789655 - 47789554
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| ||||||||||||||||||||  ||||||| |        ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  47789655 aggctttgtttgggagtttggaggggaagggaggggagggttgtagaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagcttt 47789556  T
Q  241 gg 242  Q
    ||    
T  47789555 gg 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 30132096 - 30131994
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| || ||||||||||| |||||  |||||||| |       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  30132096 ttaggctttgtttgggaatttggaggggaggggaggggagggtttcgaaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggagagggct 30131998  T
Q  239 ttgg 242  Q
    ||||    
T  30131997 ttgg 30131994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 3707030 - 3707082
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 245  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  3707030 ggaaggagcaagtggaagaaatagatgacattgagaggagaaggctttggggg 3707082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 29623106 - 29623210
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn--ggaaggagcaagtgggagaaatagaggacattgagaggagaggg 236  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||||||         ||||||||||||||| ||||||||||||||||  |||| |||||    
T  29623106 ttaggctttgtttgcgagtttagaggggaagagaggggagggttttgagaaaaaaaggaaggagcaagtggaagaaatagaggacattaggaggggaggg 29623205  T
Q  237 ctttg 241  Q
    |||||    
T  29623206 ctttg 29623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 34306019 - 34306120
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaaggg-agatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    |||||||||||| ||||||||||||| |||| ||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  34306019 aggctttgtttgggagtttggagggggaggggaggggagggttttggaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggagagggctt 34306117  T
Q  240 tgg 242  Q
    |||    
T  34306118 tgg 34306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 35282961 - 35283066
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||       ||||||||||||||| ||||||||||  ||||| |||||| | |||||    
T  35282961 aggctttgtttgcgagtttggaggggaaggaaggggaggg-tttggtaaaaaggaaggagcaagtggaagaaatagagatcattgggaggag-gagcttt 35283058  T
Q  241 ggggggtt 248  Q
    ||||||||    
T  35283059 ggggggtt 35283066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 41962132 - 41962083
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41962132 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41962083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 43237215 - 43237264
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43237215 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 43237264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 32858700 - 32858807
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggagatgagggttttg--nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    ||||||||||||||||||||||||||||||| ||  ||||| ||||         |||| |||||||||| ||||||||| ||||||||||||  | |||    
T  32858700 taggctttgtttgcgagtttggaggggaaggaaggggaggggtttggaaaaaaaaggaatgagcaagtggaagaaatagatgacattgagagggaaaggc 32858799  T
Q  238 tttggggg 245  Q
    ||||||||    
T  32858800 tttggggg 32858807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 517840 - 517806
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  517840 ttaggctttgtttgcgagtttggaggggaagggag 517806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 53664421 - 53664455
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||||||||||||||    
T  53664421 tctttaggctttgtttgcgagtttggaggggaagg 53664455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 3043275 - 3043226
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  3043275 ggaaggagcaagtggaagaaatagaagacattgggaggagaggcctttgg 3043226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 33982876 - 33982827
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  33982876 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 33982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 47714829 - 47714780
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  47714829 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 47714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 49860760 - 49860809
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  49860760 ggaaggagcaattggaagaaatagaagacattgggaggagagggctttgg 49860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 55439508 - 55439557
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  55439508 ggaatgagcaagtggaagaaatagaggacattgggaggagaggactttgg 55439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 27921838 - 27921941
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtg---ggagaaatagaggacattgagaggagagggctttg 241  Q
    |||||||||||||||||||||||||||||| || ||||| |       |||| ||| |||||   | |||| |||||||||||| ||||||||| |||||    
T  27921838 tttgtttgcgagtttggaggggaagggagacgacggtttggaaaaaaaggaaagagtaagtggaagaagaagtagaggacattgggaggagaggactttg 27921937  T
Q  242 gggg 245  Q
    ||||    
T  27921938 gggg 27921941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 37674342 - 37674310
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||||||||||||    
T  37674342 tttaggctttgtttgcgagtttggaggggaagg 37674310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 43237561 - 43237521
Alignment:
Q  133 taatctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  43237561 taatatttaggctttgtttgggagtttggaggggaagggag 43237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 3537083 - 3537187
Alignment:
Q  144 ctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggg 243  Q
    ||||||||||||||||||||||||||||||  || || |||        |||| ||| |||||| |||||||||||| | || |||| ||||||||||||    
T  3537083 ctttgtttgcgagtttggaggggaagggaggggaaggctttagaaaaaaggaatgagtaagtggaagaaatagaggaaaatgggaggggagggctttggg 3537182  T
Q  244 gggtt 248  Q
     ||||    
T  3537183 aggtt 3537187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 170
Target Start/End: Original strand, 36598122 - 36598153
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||||    
T  36598122 ttaggctttgtttgcgagtttggaggggaagg 36598153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 38515175 - 38515226
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 244  Q
    ||||||||||||||  ||||||||| || |||| ||||||||||||||||||    
T  38515175 ggaaggagcaagtgaaagaaatagaagatattgggaggagagggctttgggg 38515226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 39115009 - 39114966
Alignment:
Q  269 aaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  39115009 aaattgtattggaggaggactttagagggtttatatgaattctt 39114966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 47359250 - 47359281
Alignment:
Q  136 tctttaggctttgtttgcgagtttggagggga 167  Q
    ||||||||||||||||||||||||||||||||    
T  47359250 tctttaggctttgtttgcgagtttggagggga 47359281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 1133135 - 1133029
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg--nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||         |||| ||||||||||  |||||||| |||||||||||| || || |    
T  1133135 aggctttgtttgcgagtttgtaggggaagggaggggaggggtttggaaaaaaaaggaatgagcaagtggacgaaatagatgacattgagaggggaaggtt 1133036  T
Q  239 ttggggg 245  Q
    |||||||    
T  1133035 ttggggg 1133029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 2927731 - 2927765
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||| ||||||||||||    
T  2927731 ttaggctttgtttgcgagtttgcaggggaagggag 2927765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 3537471 - 3537437
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  3537471 ttaggctttgtttgggagtttggaggggaagggag 3537437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 36796347 - 36796389
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagg 235  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  36796347 ggaaggagcaagtggaagaaatagaagacattgggaggagagg 36796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 38456485 - 38456519
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  38456485 ttaggctttgtttgggagtttggaggggaagggag 38456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 39499463 - 39499429
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  39499463 ttaggctttgtttgggagtttggaggggaagggag 39499429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 47789262 - 47789296
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  47789262 ttaggctttgtttgggagtttggaggggaagggag 47789296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 1132756 - 1132789
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    |||||||||||||| |||||||||||||||||||    
T  1132756 ttaggctttgtttgggagtttggaggggaaggga 1132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 23163448 - 23163497
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| |||||   ||||||||||||||||    
T  23163448 ggaaggagcaagtggaagaaatagaagacatcaggaggagagggctttgg 23163497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 24242249 - 24242200
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  24242249 ggaaggagcaagtggaagaaatagaagatattgggaggagaggactttgg 24242200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 38639471 - 38639500
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  38639471 aggctttgtttgcgagtttggaggggaagg 38639500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 43007653 - 43007604
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||| ||||||||| ||||||||| || |||| ||||||||||||||||    
T  43007653 ggaagtagcaagtggaagaaatagaagatattgggaggagagggctttgg 43007604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 44400590 - 44400619
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  44400590 aggctttgtttgcgagtttggaggggaagg 44400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 44412311 - 44412262
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  44412311 ggaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 44412262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 46312578 - 46312529
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||  |||||| ||||||||| ||||||| ||||||||||||||||    
T  46312578 ggaaggactaagtggaagaaatagaagacattgggaggagagggctttgg 46312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 47434107 - 47434156
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||| |||||||||| |||||||||||||||| |||  ||||||||||    
T  47434107 tctttaagctttgtttgggagtttggaggggaagagaggggagggttttg 47434156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 53664798 - 53664769
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  53664798 aggctttgtttgcgagtttggaggggaagg 53664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 55439849 - 55439816
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||| ||||||||||||||||||||    
T  55439849 taggctttgtttgggagtttggaggggaagggag 55439816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 40119093 - 40119061
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||| |||||    
T  40119093 aggctttgtttgcgagtttggaggggaggggag 40119061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 44411972 - 44412004
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  44411972 aggctttgtttgggagtttggaggggaagggag 44412004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 45555505 - 45555541
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||| |||||||||||||| |||||    
T  45555505 ctttaggctttgtttgggagtttggaggggatgggag 45555541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 48908707 - 48908739
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||| |||||||||||||||||    
T  48908707 tttaggctttgtttgggagtttggaggggaagg 48908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 48909082 - 48909050
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||| |||||||||||||||||||    
T  48909082 aggctttgtttgcaagtttggaggggaagggag 48909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 49861099 - 49861067
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  49861099 aggctttgtttgggagtttggaggggaagggag 49861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 54126155 - 54126199
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||| ||||||| ||||||||||||||||||||  ||||||||||    
T  54126155 aggcattgtttgtgagtttggaggggaagggaggggagggttttg 54126199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 63)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 50586917 - 50587029
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    ||||||| |||||||| |||||||||||||||||||| ||| | ||||       ||||||||||||||| |||||||||||||||||||||| ||||||    
T  50586917 tttaggccttgtttgcaagtttggaggggaagggagaggagagctttggaaaaaaggaaggagcaagtggaagaaatagaggacattgagagg-gagggc 50587015  T
Q  238 tttggggggttcat 251  Q
    ||||||||||||||    
T  50587016 tttggggggttcat 50587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 27499854 - 27499957
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| ||||||| |||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  27499854 ttaggctttgtttgggagtttgaaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 27499953  T
Q  239 ttgg 242  Q
    ||||    
T  27499954 ttgg 27499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 17556540 - 17556644
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||||||||||||||||||||||||  |||||||  |       |||||||| |||||| ||||||||||||||||| ||||||| ||||||    
T  17556540 aggctttgtttgcgagtttggaggggaagggaggggagggttcagaaaaaaaggaaggagtaagtggaagaaatagaggacattgggaggaga-ggcttt 17556638  T
Q  241 gggggg 246  Q
    ||||||    
T  17556639 gggggg 17556644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 52073657 - 52073553
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||        ||||||||||||||| ||||||||| |||||||||||| || |||||    
T  52073657 aggctttgtttgcgagtttggaggggaagggaggggaggggtttgcaaaaaaaggaaggagcaagtggaagaaatagatgacattgagaggggaaggctt 52073558  T
Q  240 tgggg 244  Q
    |||||    
T  52073557 tgggg 52073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 36886739 - 36886846
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    ||||||||||||||||||||||||||||||||||||  || || || |       |||| |||||||||| |||||||||||| | ||||||| ||||||    
T  36886739 tttaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgagaggggagggc 36886838  T
Q  238 tttggggg 245  Q
    ||||||||    
T  36886839 tttggggg 36886846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 1523465 - 1523563
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |       |||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  1523465 aggctttgtttgagagtttggaggggatgggagatgagggttttggaaaaaaaggaaggagcaggtggaagaaatagaagacattgggaggagagggct 1523563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 40707407 - 40707306
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||||| |||   || ||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  40707407 aggctttgtttgggagtttggaggggaagagagggaagagttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 40707308  T
Q  241 gg 242  Q
    ||    
T  40707307 gg 40707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 49103162 - 49103054
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| |       || ||||| |||||| ||||||||||||||||| |||||| |||||    
T  49103162 ttaggctatgtttgcgagtttggaggggaagggaggggagggtttggaaaaaaagggaggagtaagtggaagaaatagaggacattgggaggag-gggct 49103064  T
Q  239 ttggggggtt 248  Q
    |||| |||||    
T  49103063 ttggagggtt 49103054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 38794840 - 38794943
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| ||||||||||| || |||||  ||||||||||       ||||||||||||||| | ||||||| || |||| ||||||||||||    
T  38794840 ttaggctttgtttgggagtttggaggcgaggggagtggagggttttgaaaaaaaggaaggagcaagtggaaaaaatagaagatattgggaggagagggct 38794939  T
Q  239 ttgg 242  Q
    ||||    
T  38794940 ttgg 38794943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 1688425 - 1688324
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagg 235  Q
    |||||||||||||||||  ||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| |||||||||    
T  1688425 tctttaggctttgtttggaagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagg 1688331  T
Q  236 gctttgg 242  Q
    |||||||    
T  1688330 gctttgg 1688324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 23871620 - 23871571
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23871620 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 23871571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 47905898 - 47905797
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| || ||  ||||||||||       |||||||| |||||| ||||||||| ||||||| |||||||||| |||    
T  47905898 aggctttgtttgggagtttggaggggagggaaggggagggttttggaaaaaaggaaggagtaagtggaagaaatagaagacattgggaggagagggtttt 47905799  T
Q  241 gg 242  Q
    ||    
T  47905798 gg 47905797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 51246774 - 51246673
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       | ||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  51246774 ttaggctttgtttgggagtttggaggggaggggaggagagggttttgaaaaaaagaaaggagcaagtgaaagaaatagaagacattgggaggaaagggct 51246675  T
Q  239 tt 240  Q
    ||    
T  51246674 tt 51246673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 26940478 - 26940582
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| ||||||||||||||  ||||  ||||||||||       ||||||||||||||| ||||||||| |||||||  ||||||| ||||     
T  26940478 aggctttgtttgagagtttggaggggagaggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattggaaggagagagcttc 26940577  T
Q  241 ggggg 245  Q
    |||||    
T  26940578 ggggg 26940582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 47742456 - 47742510
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 248  Q
    ||||||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  47742456 gaaggagtaagtggaagaaatagaggacattgagaagggagggctttggggggtt 47742510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 50599175 - 50599068
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagg 235  Q
    ||||||| ||||||||||| |||||||||| || ||||  || || ||||       ||||||||||||||| | ||||||||||| |||||||| ||||    
T  50599175 tctttagactttgtttgcgggtttggagggcaatggaggggacggctttgggaaaaaggaaggagcaagtggaaaaaatagaggactttgagaggggagg 50599076  T
Q  236 gctttggg 243  Q
    ||||||||    
T  50599075 gctttggg 50599068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 13255268 - 13255317
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  13255268 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 13255317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 32295569 - 32295617
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  32295569 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 32295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 33991466 - 33991514
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33991466 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 36269613 - 36269722
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    ||||||||||||||||||||||||||||||| |||  || || || |       |||| |||||||||| |||||||||| | | || |||| |||||||    
T  36269613 ttaggctttgtttgcgagtttggaggggaagtgaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggct 36269712  T
Q  239 ttggggggtt 248  Q
    ||||||||||    
T  36269713 ttggggggtt 36269722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 43572160 - 43572060
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||   || ||||||       |||| |||||||||| ||||||||| ||||||| ||||||||||||||    
T  43572160 aggctttgtttgggagtttggaggggaggggagggcagagttttgaaaaaaaggaatgagcaagtggaagaaatagaagacattg-gaggagagggcttt 43572062  T
Q  241 gg 242  Q
    ||    
T  43572061 gg 43572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 45565392 - 45565348
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  45565392 aggctttgtttgcgagtttggaggggaagggaggggagggttttg 45565348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 34154539 - 34154505
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  34154539 ttaggctttgtttgcgagtttggaggggaagggag 34154505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 2926091 - 2926042
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||||||||    
T  2926091 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttgg 2926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 17688262 - 17688311
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  17688262 ggaaggagcaagtggaagaaatagaaaacattgggaggagagggctttgg 17688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 28719003 - 28718893
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||| |       ||||| ||||||||| |||||||||||| |||| |||| || ||     
T  28719003 ttagactttgtttgcgagtttggaggggaaaggagtggagggttttggaaaaaaaggaagaagcaagtggaagaaatagaggatattgggaggggatggt 28718904  T
Q  238 tttggggggtt 248  Q
    ||| |||||||    
T  28718903 ttttgggggtt 28718893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 9595824 - 9595780
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  9595824 aggctttgtttgggagtttggaggggaagggaggggagggttttg 9595780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 12293682 - 12293779
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||| |||||||||||||| | |||  ||||||||||       ||||||| ||||||| ||||||||| || | || ||||||||||||    
T  12293682 aggctttgtttgggagtttggaggggaggagaggggagggttttggaaaaaaggaaggatcaagtggaagaaatagaagaaactgggaggagagggct 12293779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 39179315 - 39179271
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  39179315 aggctttgtttgggagtttggaggggaagggaggggagggttttg 39179271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 39889859 - 39889766
Alignment:
Q  149 tttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||| |||||||||||||| || ||  ||||||||||       |||||||| |||||| | ||||||| ||||||| ||||||||||||||||    
T  39889859 tttgggagtttggaggggagggaaggggagggttttggaaaatgggaaggagtaagtggaaaaaatagaagacattgggaggagagggctttgg 39889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 170
Target Start/End: Original strand, 2909019 - 2909050
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||||    
T  2909019 ttaggctttgtttgcgagtttggaggggaagg 2909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 11017468 - 11017572
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    |||||||||| | || |||||||||||||| |||||   ||| |||||       ||||||||||||||| ||||||| | ||||||||||| | |||||    
T  11017468 tttaggctttttctgggagtttggaggggaggggagggaaggattttggaaaaaaggaaggagcaagtggaagaaatatatgacattgagagaaaagggc 11017567  T
Q  238 tttgg 242  Q
    |||||    
T  11017568 tttgg 11017572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 18421121 - 18421086
Alignment:
Q  134 aatctttaggctttgtttgcgagtttggaggggaag 169  Q
    |||||||||||||||||||||||||| |||||||||    
T  18421121 aatctttaggctttgtttgcgagttttgaggggaag 18421086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 170
Target Start/End: Complemental strand, 40136480 - 40136449
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||||    
T  40136480 ttaggctttgtttgcgagtttggaggggaagg 40136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 172
Target Start/End: Complemental strand, 41432980 - 41432949
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||||||||||||||||||||    
T  41432980 aggctttgtttgcgagtttggaggggaaggga 41432949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 50403008 - 50402961
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  50403008 tttaggctttgtttgggagtttggagggtaagggagaggagggctttg 50402961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 50476419 - 50476502
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 225  Q
    |||||||||||||||| |||||||||||||| ||     ||||||||||       ||||||||||||||| ||||||||| |||||||    
T  50476419 ctttaggctttgtttgggagtttggaggggaggg-----gagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattg 50476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 7915437 - 7915495
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 251  Q
    ||||||||||||||| | |||||||| || ||| |||  ||||||||||||||||||||    
T  7915437 ggaaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcat 7915495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 13061611 - 13061508
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    ||||||||||||||  ||||| ||||||| |||||   |||||||||       ||||||||||||||| |||||| || ||||||  || |||||||||    
T  13061611 ttaggctttgtttggaagtttagaggggaggggagggaagggttttggaaaaaaggaaggagcaagtggaagaaattgaagacattcggaagagagggct 13061512  T
Q  239 ttgg 242  Q
    ||||    
T  13061511 ttgg 13061508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 15464076 - 15464030
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  15464076 ttaggctttgtttgggagtttgaaggggaagggaggggagggttttg 15464030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 29091957 - 29091991
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||| |||||||||    
T  29091957 ttaggctttgtttgcgagtttggagaggaagggag 29091991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 30538585 - 30538634
Alignment:
Q  135 atctttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||||||||||||  |||||||||||||||||| | ||||||||||    
T  30538585 atctttaggctttgtttggaagtttggaggggaaggga-aggagggttttg 30538634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 33991807 - 33991773
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  33991807 ttaggctttgtttgggagtttggaggggaagggag 33991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 36385275 - 36385317
Alignment:
Q  202 aagtgggagaaatagaggacattgagaggagagggctttgggg 244  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  36385275 aagtggaagaaatagaggacattgagagaagagggttttgggg 36385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 50247861 - 50247815
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||||    
T  50247861 ttaggctttctttgggagtttggaggggaagggaggggagggttttg 50247815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 51303384 - 51303350
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||| |||||||||||||    
T  51303384 ttaggctttgtttgcgagtttagaggggaagggag 51303350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 666253 - 666286
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggaga 174  Q
    |||||||||||| |||||||||||||||||||||    
T  666253 aggctttgtttgtgagtttggaggggaagggaga 666286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 5584387 - 5584416
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  5584387 aggctttgtttgcgagtttggaggggaagg 5584416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 5584773 - 5584744
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  5584773 aggctttgtttgcgagtttggaggggaagg 5584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 14152628 - 14152673
Alignment:
Q  197 ggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  14152628 ggagcaagtggaagaaatagaagacattgggaggagagggttttgg 14152673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 26757312 - 26757263
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||| ||| ||||||||| || |||| ||||||||||||||||    
T  26757312 ggaaggagcaaatggaagaaatagaagatattgggaggagagggctttgg 26757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 33324657 - 33324702
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    |||||||||||| || |||| ||||||||| |||||||||||||||    
T  33324657 aaaaattgtattagaggagggttttagagggtttatatgaattctt 33324702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 41432578 - 41432611
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    |||||||||||||| |||||||||||||||||||    
T  41432578 ttaggctttgtttgggagtttggaggggaaggga 41432611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 42162210 - 42162161
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  42162210 ggaaggagcaagtggaagaaatagatgacattggaaggagagggttttgg 42162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 938394 - 938346
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||| ||||||| ||||||||| || ||||||||||||||| |||||    
T  938394 gaaggatcaagtggaagaaatagaagatattgagaggagagggttttgg 938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 27255081 - 27255109
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaag 169  Q
    |||||||||||||||||||||||||||||    
T  27255081 aggctttgtttgcgagtttggaggggaag 27255109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 28727515 - 28727547
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||| ||||||||||    
T  28727515 tttaggctttgtttgcgagttttgaggggaagg 28727547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 32299366 - 32299334
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  32299366 aggctttgtttgggagtttggaggggaagggag 32299334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 32300318 - 32300286
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  32300318 aggctttgtttgggagtttggaggggaagggag 32300286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 37649825 - 37649793
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||| ||||    
T  37649825 aggctttgtttgcgagtttggaggggaatggag 37649793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 38795228 - 38795196
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  38795228 aggctttgtttgggagtttggaggggaagggag 38795196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 47742408 - 47742436
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaag 169  Q
    |||||||||||||||||||||||||||||    
T  47742408 aggctttgtttgcgagtttggaggggaag 47742436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 50476560 - 50476604
Alignment:
Q  265 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 309  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||    
T  50476560 tcaaaaattgtattggaggagggttttcgagggtttatatgaatt 50476604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 26713735 - 26713842
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||||||||||||||||||||||||  ||||||||||       ||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  26713735 aggctttgtttgcgagtttggaggggaagggaggggagggttttggaataaaggaaggagcaagtggaagaaatagagtacattgggaggggagggcttt 26713834  T
Q  241 ggggggtt 248  Q
    | ||||||    
T  26713835 gaggggtt 26713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 24734755 - 24734855
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 236  Q
    |||||||||||||||| ||||||||||||||||||||     |||||||       |||| |||||||||| ||||||||| ||||||| ||||||||||    
T  24734755 ctttaggctttgtttgggagtttggaggggaagggag-----ggttttggaaaaaaggaacgagcaagtggaagaaatagaagacattgggaggagaggg 24734849  T
Q  237 ctttgg 242  Q
    ||||||    
T  24734850 ctttgg 24734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 2365808 - 2365722
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 225  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| |||||||    
T  2365808 ttaggctttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaaatagaagacattg 2365722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 20820587 - 20820545
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaatt 309  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  20820587 aaaaattgtattggatgagagttttagaggatttatatgaatt 20820545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 1029217 - 1029266
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  1029217 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 1029266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 29241990 - 29241941
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  29241990 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 29241941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 5825602 - 5825563
Alignment:
Q  134 aatctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  5825602 aatcttaaggctttgtttgggagtttggaggggaagggag 5825563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 26481332 - 26481252
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 225  Q
    |||||||| |||||||||||||| |||||  ||||||||||       ||||| ||||||||| ||||||||| |||||||    
T  26481332 tttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaagtagcaagtggaagaaatagaagacattg 26481252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 26713885 - 26713932
Alignment:
Q  265 tcaaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||||| |||| |||| |||| |||||||||||||||    
T  26713885 tcaaaaattgtattggaggagggttttggagggtttatatgaattctt 26713932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 4909692 - 4909730
Alignment:
Q  135 atctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  4909692 atcttaaggctttgtttgggagtttggaggggaagggag 4909730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 29054601 - 29054643
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaatt 309  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||    
T  29054601 aaaaattgtattgaatgaggatttttgagggtttatatgaatt 29054643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 29241649 - 29241683
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  29241649 ttaggctttgtttgggagtttggaggggaagggag 29241683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 32719582 - 32719552
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||    
T  32719582 gctttgtttgcgagtttggaggggaagggag 32719552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 14275910 - 14275955
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||    
T  14275910 ggaatgagcaagtggaagaaatagaagacattgggaggagagggct 14275955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 33590537 - 33590504
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||||| ||||    
T  33590537 taggctttgtttgcgagtttggaggggaatggag 33590504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 1567157 - 1567185
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||    
T  1567157 tttgtttgcgagtttggaggggaagggag 1567185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 4584339 - 4584307
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||| ||||||||||    
T  4584339 tttaggctttgtttgcgagttttgaggggaagg 4584307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 5825257 - 5825305
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    ||||||||||||||  ||||||||| ||||||| ||||||| |||||||    
T  5825257 ggaaggagcaagtgaaagaaatagaagacattgggaggagaaggctttg 5825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 16625988 - 16625883
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||||||||||||||||||||  ||||||||||       ||| ||||||||||| |||||||||| |||||| |||| |||||||||||    
T  16625988 gctttgtttgcgagtttggaggggaagggaggggagggttttggaaaaaaggatggagcaagtggaagaaatagagtacattgggaggggagggctttgg 16625889  T
Q  243 ggggtt 248  Q
    ||||||    
T  16625888 ggggtt 16625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 16519297 - 16519191
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||       ||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  16519297 aggctttgtttgcgagtttggaggggaagagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagagtacattg-gaggggagggcttt 16519199  T
Q  241 ggggggtt 248  Q
    || |||||    
T  16519198 ggtgggtt 16519191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 3039158 - 3039057
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    ||||||||||||| ||||||||||||||  ||||  ||||||||||       ||||||||||||||| | ||||||| ||||||| |||||||||||||    
T  3039158 taggctttgtttgggagtttggaggggagaggaggagagggttttgaaaaaaaggaaggagcaagtggaaaaaatagaagacattgggaggagagggctt 3039059  T
Q  240 tg 241  Q
    ||    
T  3039058 tg 3039057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 4003298 - 4003407
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||| |||||||||  ||||| ||||       |||| |||||||||| |||||||||||| | || |||| |||||||    
T  4003298 ttaggctttgtttgtgagtttggagtggaagggaggggagggctttggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggct 4003397  T
Q  239 ttggggggtt 248  Q
    ||||||||||    
T  4003398 ttggggggtt 4003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 12964185 - 12964080
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 236  Q
    |||||||||||||||| ||||| |||||||| | |||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| |    
T  12964185 ctttaggctttgtttgggagttgggaggggaggagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagag 12964086  T
Q  237 ctttgg 242  Q
    ||||||    
T  12964085 ctttgg 12964080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 18780254 - 18780357
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggac--attgagaggagagggct 238  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       |||||||||| |||| ||||||||| |||  |||| ||||||||||||    
T  18780254 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcacgtggaagaaatagaagacatattgggaggagagggct 18780353  T
Q  239 ttgg 242  Q
    ||||    
T  18780354 ttgg 18780357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 11522373 - 11522286
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagagg 230  Q
    |||||||||||||||||||||||||| ||||  ||||||||||       |||||||| || ||| ||||||||||||||||| ||||    
T  11522373 gctttgtttgcgagtttggaggggaatggaggggagggttttgaaaaaaaggaaggagtaaatggaagaaatagaggacattgggagg 11522286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 19382802 - 19382850
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  19382802 ggaaggagcaagtggaagaaatagaagacattgagaggaaagggctttg 19382850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 36030738 - 36030790
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 245  Q
    ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  36030738 ggaaggagccagtggaagaaatagaggaccttgagaagagagggctttggggg 36030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 44137029 - 44137125
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||     |||||||       ||||||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  44137029 aggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaaatggaagaaatagaagacattgggaggagagggcttt 44137123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 25960765 - 25960718
Alignment:
Q  195 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  25960765 aaggagcaagtggaagaaatagaagacattgaaaggagagggctttgg 25960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 32761483 - 32761383
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||| ||||||||||||||||||||||||  ||||| ||||        |||||| ||||||| | ||||||||||||||| | | ||||||||||    
T  32761483 aggctttgattgcgagtttggaggggaagggaggggagggctttgtaaaaaatgaaggatcaagtggaataaatagaggacattgggggcagagggcttt 32761384  T
Q  241 g 241  Q
    |    
T  32761383 g 32761383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 11514914 - 11514948
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  11514914 ttaggctttgtttgcgagtttggaggggaagggag 11514948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 16813506 - 16813540
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  16813506 ttaggctttgtttgcgagtttggaggggaagggag 16813540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 16852785 - 16852819
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  16852785 ttaggctttgtttgcgagtttggaggggaagggag 16852819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 6655985 - 6656022
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6655985 tctttaggctttgtctgcgagtttggaggggaagggag 6656022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 15803212 - 15803257
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||    
T  15803212 aaaaattgtattggaggaggattttggagggtttatatgaattctt 15803257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 18826044 - 18826081
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18826044 tctttaggctttgtttgggagtttggaggggaagggag 18826081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 31550460 - 31550382
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaataga 217  Q
    |||||||||||||| |||||||||| ||| |||||  ||||||||||       ||||||||||||||| |||||||||    
T  31550460 ttaggctttgtttgggagtttggagtggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaataga 31550382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 43572758 - 43572725
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||||||||||    
T  43572758 taggctttgtttgcgagtttggaggggaagggag 43572725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 1365089 - 1365057
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||||||||||||    
T  1365089 tttaggctttgtttgcgagtttggaggggaagg 1365057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 30312609 - 30312513
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| |||||||||  |||||| |||||||||| |||    
T  30312609 aggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaacacattgggaggagagggtttt 30312515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 34757862 - 34757830
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||||||||||||    
T  34757862 tttaggctttgtttgcgagtttggaggggaagg 34757830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 37201828 - 37201792
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37201828 ctttaggctttgtttgcgaatttggaggggaagggag 37201792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 6711987 - 6711940
Alignment:
Q  195 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||| ||| ||| ||||||||| ||||||||||||||||||||||||    
T  6711987 aaggaacaaatggaagaaatagaagacattgagaggagagggctttgg 6711940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 14008539 - 14008435
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||| |        ||||||| |||||| ||||||||| ||||||| || |||| |||    
T  14008539 ttaggctttctttgggagtttggaggggaagggaggggagggttttggaaaaaaaagaaggagtaagtggaagaaatagaagacattgggatgagatggc 14008440  T
Q  238 tttgg 242  Q
    |||||    
T  14008439 tttgg 14008435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 42644911 - 42644864
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  42644911 tttaggctctgtttgggagtttggaggggaagggaggagagggttttg 42644864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 1364715 - 1364744
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  1364715 aggctttgtttgcgagtttggaggggaagg 1364744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 5322317 - 5322288
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  5322317 aggctttgtttgcgagtttggaggggaagg 5322288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 8555933 - 8555884
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||| |||||    
T  8555933 ggaaggagcaagtggaagaaatagaagacattgggagaagagggttttgg 8555884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 11515307 - 11515278
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  11515307 aggctttgtttgcgagtttggaggggaagg 11515278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 12941953 - 12941905
Alignment:
Q  197 ggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 246  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  12941953 ggagtaagtggaagaaatagaggacattgggagga-agggctttgggggg 12941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 18826389 - 18826340
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||  || |||||||||||||    
T  18826389 ggaaggagcaagtggaagaaatagaagacattaggaagagagggctttgg 18826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 32243399 - 32243448
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  32243399 ggaaggagcaatgggaagaaatagaagacattgggaggagagggctttgg 32243448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 39204824 - 39204853
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  39204824 aggctttgtttgcgagtttggaggggaagg 39204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 44137342 - 44137309
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    |||||||||||||| |||||||||||||||||||    
T  44137342 ttaggctttgtttgggagtttggaggggaaggga 44137309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 8411086 - 8411038
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  8411086 gaaggagcaagttgaggaaatagaagacattgggaggagagggctttgg 8411038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 13018687 - 13018655
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||| ||||||||||    
T  13018687 aggctttgtttgcgagtttggaagggaagggag 13018655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 14008147 - 14008179
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  14008147 aggctttgtttgggagtttggaggggaagggag 14008179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 31082740 - 31082792
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 245  Q
    |||| |||||||||| |||||||||||| | || |||| ||||||||||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggg 31082792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 32761112 - 32761140
Alignment:
Q  139 ttaggctttgtttgcgagtttggagggga 167  Q
    |||||||||||||||||||||||||||||    
T  32761112 ttaggctttgtttgcgagtttggagggga 32761140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 36567434 - 36567386
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36567434 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36567386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 37194142 - 37194170
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||    
T  37194142 tttgtttgcgagtttggaggggaagggag 37194170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 38023601 - 38023553
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||| | ||||||||| |||||||| ||||||||| |||||    
T  38023601 gaaggagcaagtagaagaaatagaagacattgaaaggagagggttttgg 38023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 7182402 - 7182299
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| |||||||||||||||| |||    
T  7182402 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagct 7182303  T
Q  239 ttgg 242  Q
    ||||    
T  7182302 ttgg 7182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 38317439 - 38317337
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    ||||||||||||| ||||| |||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  38317439 taggctttgtttgggagttgggaggggaggggaggagagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggctt 38317340  T
Q  240 tgg 242  Q
    |||    
T  38317339 tgg 38317337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 41364023 - 41363920
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||||||| |||||   | |||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  41364023 ttaggctttgtttgggagtttggaggggaggggagggaacggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 41363924  T
Q  239 ttgg 242  Q
    ||||    
T  41363923 ttgg 41363920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 35959072 - 35959172
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||||||||||||||||||||  |||| ||| |       ||||||||||||||| |||||||||| |||||| |||| |||||||||||    
T  35959072 gctttgtttgcgagtttggaggggaagggaggggaggttttggaaaga--ggaaggagcaagtggaagaaatagagtacattgtgaggggagggctttgg 35959169  T
Q  243 ggg 245  Q
    |||    
T  35959170 ggg 35959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 46177136 - 46177029
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||        |||||| ||||||| |||||||||| |||||| |||| ||||| |||    
T  46177136 aggctttgtttgtgagtttggagggaaagggaggggagggttttggaaaaaaagaaggaacaagtggaagaaatagagtacattgggaggggagggtttt 46177037  T
Q  241 ggggggtt 248  Q
    ||||||||    
T  46177036 ggggggtt 46177029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 54205760 - 54205813
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 246  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  54205760 ggaaggagcaagtggaagaaatagaggactttgagaggggagggctttgggggg 54205813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 24279786 - 24279887
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||| ||| |||||| |||||||||||||  ||||||||||       ||||||||||||||| || |||| | ||||||| ||||||||||||||    
T  24279786 aggctttgattgggagtttagaggggaagggagtggagggttttggaaaaaaggaaggagcaagtggaaggaataaaagacattgggaggagagggcttt 24279885  T
Q  241 gg 242  Q
    ||    
T  24279886 gg 24279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 16535561 - 16535664
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    ||||| |||||||| |||||| |||||||  ||||  |||||||| |       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  16535561 ttaggttttgtttgggagtttagaggggagaggaggggagggtttgggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 16535660  T
Q  239 ttgg 242  Q
    ||||    
T  16535661 ttgg 16535664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 37756870 - 37756821
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  37756870 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 37756821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 48830972 - 48830923
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  48830972 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 48830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 54806345 - 54806447
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||        || ||||||||||| || |||| | ||||||| ||||||||||||    
T  54806345 ttaggctttgtttgggagtttggagaggaagggaggggagggttttggaaaaaatgatggagcaagtggaaggaataaaagacattgggaggagagggct 54806444  T
Q  239 ttg 241  Q
    |||    
T  54806445 ttg 54806447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 38365901 - 38366002
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||  ||| |||||        ||||||||||||||| ||||||||| |||||||  |||||||| ||||    
T  38365901 aggctttgtttgggagtttggaggggaggggaggggagagttttagaaaaaaggaaggagcaagtggaagaaatagaagacattggaaggagaggacttt 38366000  T
Q  241 gg 242  Q
    ||    
T  38366001 gg 38366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 52636631 - 52636740
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    ||||||||||||||||||||||||||||||||||   |||  |||||       |||  |||||||||| |||||||||| ||||||  ||  |||||||    
T  52636631 ttaggctttgtttgcgagtttggaggggaagggatgggagaattttggaaaaaaggactgagcaagtggaagaaatagagtacattggaagatgagggct 52636730  T
Q  239 ttggggggtt 248  Q
    ||||||||||    
T  52636731 ttggggggtt 52636740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 17873122 - 17873169
Alignment:
Q  195 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  17873122 aaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 17873169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 675241 - 675287
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||    
T  675241 ttaggctttgtttgcgagtttggaggggaagggaaaggagggctttg 675287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 13270475 - 13270381
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  13270475 gctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggagtagagggctttgg 13270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 28880029 - 28880070
Alignment:
Q  271 attgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  28880029 attgtattgaatgaggattttggaggatttatatgaattctt 28880070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 31530291 - 31530254
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31530291 tctttaggctttgtttgagagtttggaggggaagggag 31530254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 45899550 - 45899513
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45899550 tctttaggctttgtttgggagtttggaggggaagggag 45899513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 52430765 - 52430732
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||||||||||||||||||||||    
T  52430765 ttaggctttgtttgcgagtttggaggggaaggga 52430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 56504625 - 56504576
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  56504625 ggaaggagcaagtgcaagaaatagaagacattgggaggagagggctttgg 56504576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 904122 - 904170
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  904122 gaaggagcaagtggaagaaatagaagacattcggaggagagggctttgg 904170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 3127219 - 3127119
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||  |||| |||||       ||||||||||| ||  ||||||||| |||||||||| | |||||||||    
T  3127219 aggctttgtttg-gagtttggaggggaggggaggggaggattttggaaaaaaggaaggagcaaatgaaagaaatagaagacattgagaagtgagggcttt 3127121  T
Q  241 gg 242  Q
    ||    
T  3127120 gg 3127119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 21081215 - 21081332
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg-----nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggaga 233  Q
    ||||||||||||||||||||||||||||||| |||  ||||| ||||            ||||||||||||||| ||||||||| |||||||||||| ||    
T  21081215 ttaggctttgtttgcgagtttggaggggaagagaggggaggggtttgaaaaaaaaagaaggaaggagcaagtggaagaaatagatgacattgagagggga 21081314  T
Q  234 gggctttggggggttcat 251  Q
      | ||||| ||||||||    
T  21081315 atgttttggagggttcat 21081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 18964940 - 18964893
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||| ||||||||| |||||||||||||| |||||| ||||||||||    
T  18964940 tttagactttgtttgggagtttggaggggaggggagaggagggttttg 18964893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 29576348 - 29576305
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggagatgagg 179  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  29576348 tctttagactttgtttgcgagtttggaggggaatggagaggagg 29576305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 38137046 - 38137011
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||| |||||||||||||||||||||||||||||||    
T  38137046 tttatgctttgtttgcgagtttggaggggaagggag 38137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 41844701 - 41844666
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41844701 tttaggctttgtttgggagtttggaggggaagggag 41844666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 48417659 - 48417612
Alignment:
Q  265 tcaaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||||| ||||||||| |||| | |||||||||||||    
T  48417659 tcaaaaattgtattggaggaggattttggagggtctatatgaattctt 48417612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 20534192 - 20534158
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  20534192 ttaggctttgtttgggagtttggaggggaagggag 20534158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 21357978 - 21358024
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  21357978 ttaggctctgtttgagagtttggaggggaagggaggggagggttttg 21358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 22845048 - 22845082
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  22845048 ttaggctttgtttgggagtttggaggggaagggag 22845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 29114445 - 29114411
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||| ||||||||||    
T  29114445 ttaggctttgtttgcgagtttggaagggaagggag 29114411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 8828029 - 8827984
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt 184  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||||||    
T  8828029 ttagactttgtttgcgagtttgaaggggcagggagaggagggtttt 8827984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 13985021 - 13984976
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||| |||| |||| |||||||||||||| |||||    
T  13985021 aaaaattgtattggaggagggttttggaggatttatatgagttctt 13984976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 31340658 - 31340703
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||||||| |||||||||||||||||||   ||||||||||    
T  31340658 taggctttgtttgggagtttggaggggaagggatgggagggttttg 31340703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 31529943 - 31529992
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||| |||||    
T  31529943 ggaaggagcaagtggaagaaatagaagacatcgggaggagagggttttgg 31529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 38366294 - 38366257
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  38366294 tctttaggctttgtttgggagtttggagaggaagggag 38366257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 43793990 - 43793957
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||| ||||||||||||||||||||    
T  43793990 ttaggctttgtttacgagtttggaggggaaggga 43793957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 45022875 - 45022818
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 251  Q
    |||||||||||||| | |||||| |||| |||||||| ||||||||| | ||||||||    
T  45022875 gaaggagcaagtggaaaaaataggggactttgagaggggagggctttagtgggttcat 45022818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 47063716 - 47063761
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||    
T  47063716 aaaaattgtattggaagaggatttgagagggtttatgtgaattctt 47063761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 48620204 - 48620256
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 246  Q
    |||||||| |||||| |||||||||||||||||  ||||| |||||||||||||    
T  48620204 ggaaggagtaagtggaagaaatagaggacattggaaggag-gggctttgggggg 48620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 48620545 - 48620512
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||||||||||||||||| ||||    
T  48620545 ttaggctttgtttgcgagtttggaggggagggga 48620512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 55813823 - 55813794
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaa 168  Q
    ||||||||||||||||||||||||||||||    
T  55813823 ttaggctttgtttgcgagtttggaggggaa 55813794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 13269877 - 13269925
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    ||||||||||||||| ||||||||| ||||| | || ||||||||||||    
T  13269877 ggaaggagcaagtggaagaaatagaagacatcgtgaagagagggctttg 13269925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 21295940 - 21295980
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  21295940 tttgtttgggagtttggaggggaagggaggttagggttttg 21295980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 27485451 - 27485419
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||| |||||||||    
T  27485451 aggctttgtttgcgagtttggagtggaagggag 27485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 31187303 - 31187202
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||  || |||||||       ||||| ||||| ||| ||||||  | ||||||  ||||||||||||||    
T  31187303 aggctttgtttgggagtttggaggggacgggaggggatggttttggaaaaaaggaagaagcaactggaagaaattaaagacattaggaggagagggcttt 31187204  T
Q  241 gg 242  Q
    ||    
T  31187203 gg 31187202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 31419100 - 31419060
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  31419100 tttgtttgcgagtttggagggaaagggagccgagggttttg 31419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 32648822 - 32648866
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||| | ||||||||||||||||||  ||||||||||    
T  32648822 aggctttgtttgggggtttggaggggaagggaggggagggttttg 32648866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 33500392 - 33500424
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||| ||||||||||    
T  33500392 aggctttgtttgcgagtttggaagggaagggag 33500424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 45971486 - 45971538
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 245  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  45971486 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggttttggggg 45971538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 3658722 - 3658616
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| |||    
T  3658722 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaagaaggaaggagcaagtggaagaaatagaagacattgggaggagagagct 3658623  T
Q  239 ttggggg 245  Q
    |||||||    
T  3658622 ttggggg 3658616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 33406841 - 33406741
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||  |||||||||        ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  33406841 aggctttgtttgggagtttggaggggaggggaggggagggttttaaaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 33406742  T
Q  241 g 241  Q
    |    
T  33406741 g 33406741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 38505547 - 38505436
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 236  Q
    |||||||||||||||||||||||||||||||||||||  || || || |       |||| |||||||||| |||||||||||| | || |||| |||||    
T  38505547 ctttaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggaggg 38505448  T
Q  237 ctttggggggtt 248  Q
    ||||||||||||    
T  38505447 ctttggggggtt 38505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 23620950 - 23620901
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  23620950 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 23620901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 33113798 - 33113749
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33113798 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 34652208 - 34652159
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34652208 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 19644323 - 19644367
Alignment:
Q  265 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 309  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  19644323 tcaaaaattgtattggatgagggttttggaggatttatatgaatt 19644367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 36747165 - 36747270
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 236  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||| |        |||||||||||||| ||||||||| |||||||  |||||||||    
T  36747165 tttaggctttgtttgagagtttggaggggaggggaggggagggttttggaaaaaaatgaaggagcaagtggaagaaatagaagacattggaaggagaggg 36747264  T
Q  237 ctttgg 242  Q
     |||||    
T  36747265 ttttgg 36747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 7667376 - 7667272
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||| |        ||| |||||||||| ||||||||| ||||||| |||||||| ||    
T  7667376 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaatagaatgagcaagtggaagaaatagaagacattgggaggagagagc 7667277  T
Q  238 tttgg 242  Q
    |||||    
T  7667276 tttgg 7667272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 5968253 - 5968151
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| ||||||| | |||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||| || |||    
T  5968253 ttaggctttgtttgggagtttgaaagggaggggaggggagggttttggaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggaaagcgct 5968155  T
Q  239 ttgg 242  Q
    ||||    
T  5968154 ttgg 5968151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 28437699 - 28437650
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  28437699 ggaaggagcaagtggaagaaataaaagacattgggaggagagggctttgg 28437650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 42620508 - 42620459
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  42620508 ggaatgagcaagtggaagaaatagaagacattgggaggagagggctttgg 42620459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 1277802 - 1277846
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 183  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||    
T  1277802 ttaggttttgtttgcgagtttgaaggggaagggaggtgagggttt 1277846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 4058348 - 4058316
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||    
T  4058348 aggctttgtttgcgagtttggaggggaagggag 4058316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 16805776 - 16805744
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||    
T  16805776 aggctttgtttgcgagtttggaggggaagggag 16805744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 46612011 - 46611967
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 183  Q
    |||||||||||||||||||||||||||||| |||  |||||||||    
T  46612011 ttaggctttgtttgcgagtttggaggggaaaggaagtgagggttt 46611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 34651868 - 34651903
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34651868 tttaggctttgtttgggagtttggaggggaagggag 34651903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 30081236 - 30081270
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  30081236 ttaggctttgtttgtgagtttggaggggaagggag 30081270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 33113458 - 33113492
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||| |||||||||||||||||||    
T  33113458 tttaggctttgtttgggagtttggaggggaaggga 33113492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 38137821 - 38137851
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||||||||||    
T  38137821 taggctttgtttgcgagtttggaggggaagg 38137851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 17884393 - 17884364
Alignment:
Q  138 tttaggctttgtttgcgagtttggagggga 167  Q
    ||||||||||||||||||||||||||||||    
T  17884393 tttaggctttgtttgcgagtttggagggga 17884364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 19644225 - 19644274
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||| | |||||||||| ||||| |||||||    
T  19644225 ggaaggagcaagtggaagaaatacaagacattgagatgagagagctttgg 19644274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 33188057 - 33188024
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||| ||||||    
T  33188057 ctttaggctttgtttgcgagtttggagaggaagg 33188024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 33871776 - 33871809
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||||||||||||||||| ||||    
T  33871776 ttaggctttgtttgcgagtttggaggggagggga 33871809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 36747560 - 36747519
Alignment:
Q  144 ctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  36747560 ctttgtttgagagtttggaggggaagggaaaggagggttttg 36747519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 7666982 - 7667014
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  7666982 aggctttgtttgggagtttggaggggaagggag 7667014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 15749154 - 15749126
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||    
T  15749154 tttgtttgcgagtttggaggggaagggag 15749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 19791563 - 19791591
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||    
T  19791563 tttgtttgcgagtttggaggggaagggag 19791591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 28437359 - 28437391
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  28437359 aggctttgtttgagagtttggaggggaagggag 28437391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 33872263 - 33872231
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||| |||||    
T  33872263 aggctttgtttgcgagtttggaggggaggggag 33872231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 38236055 - 38236023
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  38236055 aggctttgtttgggagtttggaggggaagggag 38236023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 38505390 - 38505346
Alignment:
Q  268 aaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    |||||||||||||| |||| |||| |||| |||||||||||||||    
T  38505390 aaaattgtattggaggagggttttggagggtttatatgaattctt 38505346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 41471377 - 41471409
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||| ||||||||    
T  41471377 aggctttgtttgcgagtttggaggagaagggag 41471409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 42382958 - 42382926
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||| |||||||||||||||||||||||||||    
T  42382958 aggctctgtttgcgagtttggaggggaagggag 42382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 42854116 - 42854152
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||| || |||||||||||||||||    
T  42854116 ctttaggctttgtttgtgaatttggaggggaagggag 42854152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 43189120 - 43189076
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  43189120 aggctttgtttgggagtttggatgggaagggagaggagggctttg 43189076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 46442581 - 46442613
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||| ||||||||||||||||||||||||    
T  46442581 aggctttggttgcgagtttggaggggaagggag 46442613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 46745780 - 46745692
Alignment:
Q  156 gtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 245  Q
    |||||||||||| |||||  ||||||||||       ||||||||||||||| | ||||||| |||| ||||||| |||| |||||||||    
T  46745780 gtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaaaaaatagaagaca-tgagaggggaggactttggggg 46745692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 35700932 - 35701033
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||  ||||||||| ||||||| ||||||||||||||    
T  35700932 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaggagagggcttt 35701031  T
Q  241 gg 242  Q
    ||    
T  35701032 gg 35701033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 35704583 - 35704681
Alignment:
Q  142 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||       ||||||| ||||||| ||||||||||||||||| |||  |||||||||    
T  35704583 ggctttgtttgcaagtttggagaggaagggaggggagggttttgggaaaaaggaaggaacaagtggaagaaatagaggacattgggagaggagggcttt 35704681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 38302510 - 38302461
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38302510 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 38302461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 10437857 - 10437965
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    ||||||||||||||||||||||||||||||||||| || || || |       |||| |||||||||| |||||||||| | | || |||| |||| |||    
T  10437857 taggctttgtttgcgagtttggaggggaagggagaggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggaggtctt 10437956  T
Q  240 tggggggtt 248  Q
    |||||||||    
T  10437957 tggggggtt 10437965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 10295354 - 10295456
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaaggga-gatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    |||||||| ||| ||||||| |||||| |||| || ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  10295354 aggctttgattgggagtttgaaggggaggggatgaggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagatggctt 10295453  T
Q  240 tgg 242  Q
    |||    
T  10295454 tgg 10295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 27480375 - 27480278
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||| ||||||| ||||||  ||||  ||||||||||       ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27480375 tttgtttgggagtttgaaggggagaggaggggagggttttggaaaaaaggaagaagcaagtggaagaaatagaagacattgggaggagagggctttgg 27480278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 4649139 - 4649096
Alignment:
Q  198 gagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  4649139 gagcaagtggaagaaatagaagacattgagaggagagggctttg 4649096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 35708962 - 35708855
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg-nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    |||||||||||| ||||||||||||||||||||  |||||||| |        |||||||| |||||| |||||| ||||||||||  ||||| ||||||    
T  35708962 aggctttgtttgtgagtttggaggggaagggaggggagggtttggaaaaaaaaggaaggagtaagtggaagaaattgaggacattggaaggag-gggctt 35708864  T
Q  240 tggggggtt 248  Q
    |||||||||    
T  35708863 tggggggtt 35708855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 1935275 - 1935241
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  1935275 ttaggctttgtttgcgagtttggaggggaagggag 1935241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 1658101 - 1658150
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  1658101 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 1658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 13569260 - 13569293
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||||||||||    
T  13569260 taggctttgtttgcgagtttggaggggaagggag 13569293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 26149527 - 26149576
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  26149527 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 26149576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 32125320 - 32125275
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||    
T  32125320 aaaaattgtattggaggaggattttagagggtttgtatgaattctt 32125275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 5772545 - 5772577
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||||||||||||    
T  5772545 tttaggctttgtttgcgagtttggaggggaagg 5772577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 6491086 - 6491118
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||    
T  6491086 aggctttgtttgcgagtttggaggggaagggag 6491118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 32824531 - 32824567
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32824531 ctttaggctttgtttgcgagtttggaggagaagggag 32824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 9096195 - 9096226
Alignment:
Q  142 ggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||||||||    
T  9096195 ggctttgtttgcgagtttggaggggaagggag 9096226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 9096341 - 9096388
Alignment:
Q  265 tcaaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    |||| |||||||||||| ||||||||| |||| |||||||||||||||    
T  9096341 tcaacaattgtattggaggaggattttggagggtttatatgaattctt 9096388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 18670902 - 18670937
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||| ||||||||||||||||||||    
T  18670902 tttaggctttgtttgtgagtttggaggggaagggag 18670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 6816258 - 6816296
Alignment:
Q  195 aaggagcaagtgggagaaatagaggacattgagaggaga 233  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  6816258 aaggagcaagtggaagaaatagatgacattgagaggaga 6816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 10295751 - 10295717
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  10295751 ttaggctttgtttgggagtttggaggggaagggag 10295717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 10842922 - 10842956
Alignment:
Q  136 tctttaggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||| |||||    
T  10842922 tctttaggctttgtttgcgagtttggaggagaagg 10842956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 17093162 - 17093128
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  17093162 ttaggctttgtttgggagtttggaggggaagggag 17093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 25598585 - 25598619
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  25598585 ttaggctttgtttgggagtttggaggggaagggag 25598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 35683682 - 35683575
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||||||||||| ||||||||||||  || ||||| |       |||| |||||||||| ||||||||| || | || |||  ||||||||     
T  35683682 aggctttgtttgcgagtttgaaggggaagggaggggaaggtttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggcttc 35683583  T
Q  241 ggggggtt 248  Q
    ||||||||    
T  35683582 ggggggtt 35683575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 38120011 - 38120045
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  38120011 ttaggctttgtttgggagtttggaggggaagggag 38120045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 39649440 - 39649474
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||| |||||||    
T  39649440 ttaggctttgtttgcgagtttggagggcaagggag 39649474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 2020905 - 2020954
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||  ||||||| |||||||| |||||||    
T  2020905 ggaaggagcaagtggaagaaatagtagacattgggaggagagagctttgg 2020954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 3676562 - 3676517
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||| |||||||||  ||| |||||||||||||||    
T  3676562 aaaaattgtattggaggaggattttgaagggtttatatgaattctt 3676517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 6491476 - 6491427
Alignment:
Q  196 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 245  Q
    |||||||||||| ||||||||| || ||||  ||||||||||||||||||    
T  6491476 aggagcaagtggaagaaatagaagaaattggtaggagagggctttggggg 6491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 6620504 - 6620471
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||||||||| ||||||||||||    
T  6620504 ttaggctttgtttgcgagttttgaggggaaggga 6620471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 9684607 - 9684640
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    |||||||||||||| |||||||||||||||||||    
T  9684607 ttaggctttgtttgggagtttggaggggaaggga 9684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 19389875 - 19389830
Alignment:
Q  267 aaaaattgtattggatgaggattttagaggatttatatgaattctt 312  Q
    ||||||||||||||| ||||||||| |||| |||| ||||||||||    
T  19389875 aaaaattgtattggaggaggattttggagggtttacatgaattctt 19389830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 35683290 - 35683319
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaag 169  Q
    ||||||||||||||||||||||||||||||    
T  35683290 taggctttgtttgcgagtttggaggggaag 35683319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 1658439 - 1658395
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||    
T  1658439 aggctttgtttgagagtttgaaggggaagggaggggagggttttg 1658395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 10376994 - 10377026
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||| ||||||||||    
T  10376994 tttaggctttgtttgcgagttttgaggggaagg 10377026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 13449865 - 13449897
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattg 225  Q
    |||||||||||||||||||||| ||||||||||    
T  13449865 ggaaggagcaagtgggagaaattgaggacattg 13449897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 13450508 - 13450548
Alignment:
Q  272 ttgtattggatgaggattttagaggatttatatgaattctt 312  Q
    |||||||||| ||||||||| ||||||||||||||| ||||    
T  13450508 ttgtattggaggaggattttggaggatttatatgaactctt 13450548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 17092823 - 17092871
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||||||| ||| ||||| |||||||  |||||||||||||||    
T  17092823 gaaggagcaagtggaagatatagaagacattggaaggagagggctttgg 17092871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 21571929 - 21571961
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||| ||||||||||    
T  21571929 tttaggctttgtttgcgagttttgaggggaagg 21571961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 33718445 - 33718413
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||| |||||||||||||||||||    
T  33718445 taggctttgtttgggagtttggaggggaaggga 33718413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 43496379 - 43496407
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaag 169  Q
    |||||||||||||||||||||||||||||    
T  43496379 aggctttgtttgcgagtttggaggggaag 43496407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 34272384 - 34272488
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    |||||||||||||| ||||||| ||||||||||||  |||| |||||        ||||||||||||||| ||||||||| |||||||||||||||||||    
T  34272384 ttaggctttgtttgggagtttgaaggggaagggaggggaggattttggaaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagggc 34272483  T
Q  238 tttgg 242  Q
    |||||    
T  34272484 tttgg 34272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 3404782 - 3404681
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||  ||||||| ||||||    
T  3404782 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattaggaggagaaggcttt 3404683  T
Q  241 gg 242  Q
    ||    
T  3404682 gg 3404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 1942241 - 1942141
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||  ||||||||||||||||||||  ||||||||||       ||||||| ||||||| ||||||||| ||||||| ||||||||||||||    
T  1942241 aggctttgtttaggagtttggaggggaagggaggggagggttttgaaaaaa-ggaaggatcaagtggaagaaatagaagacattgggaggagagggcttt 1942143  T
Q  241 gg 242  Q
    ||    
T  1942142 gg 1942141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 37659743 - 37659639
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 237  Q
    |||||| |||||||| ||||||| ||||||||||||  ||||||||||       ||||||||  ||||| ||||||||| ||||||| |||||||||||    
T  37659743 tttaggttttgtttgggagtttgaaggggaagggaggggagggttttggaaaaaaggaaggagtgagtggaagaaatagaagacattgggaggagagggc 37659644  T
Q  238 tttgg 242  Q
    |||||    
T  37659643 tttgg 37659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 36906062 - 36906160
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  36906062 ttaggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 36906156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 6691 - 6791
Alignment:
Q  142 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    ||||||||||| |||||||||||  | |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  6691 ggctttgtttgggagtttggaggataggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagagctttg 6790  T
Q  242 g 242  Q
    |    
T  6791 g 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 79823 - 79715
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatg-agggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 239  Q
    |||||||||||||||||||||||||||||||||  | ||| ||  |       |||| |||||||||| |||||||||||| | || |||| ||||||||    
T  79823 aggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaaggaacgagcaagtggaagaaatagaggaaaatgggaggggagggctt 79724  T
Q  240 tggggggtt 248  Q
    |||||||||    
T  79723 tggggggtt 79715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 39193855 - 39193910
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 248  Q
    ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  39193855 ggaagtagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 39193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 21262786 - 21262740
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||    
T  21262786 ttaggctttgtttgcgagtttggaggggaagggaaaggagggctttg 21262740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 1839636 - 1839669
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggga 172  Q
    ||||||||||||||||||||||||||||||||||    
T  1839636 ttaggctttgtttgcgagtttggaggggaaggga 1839669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 4734653 - 4734604
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  4734653 ggaaggagcaagtggaagaaatagaagacattgggaggagagggttttgg 4734604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 1941864 - 1941900
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1941864 ctttaggctttgtttgggagtttggaggggaagggag 1941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 23932767 - 23932735
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaaggga 172  Q
    |||||||||||||||||||||||||||||||||    
T  23932767 taggctttgtttgcgagtttggaggggaaggga 23932735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 34148398 - 34148442
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  34148398 aggctttgtttgggagtttggaggggaagggaggggagggttttg 34148442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 34304640 - 34304688
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    ||||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  34304640 ggaaggagcaagtggaagaaatagaagacattaagatgagagggctttg 34304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 42651519 - 42651563
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  42651519 aggctttgtttgcgagtttgtagggaaagagagatgagggttttg 42651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 26772852 - 26772817
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggaga 174  Q
    ||||||||||||||||||||||||||| ||||||||    
T  26772852 ttaggctttgtttgcgagtttggagggaaagggaga 26772817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 31297503 - 31297456
Alignment:
Q  194 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  31297503 gaaggagcaagtggaagaaatagaagacattgggaggagatggctttg 31297456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 35376839 - 35376727
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    ||||||||| ||||||||||  ||||| | |||||  |||||||||        ||||| |||||||||  |||||| |||||||||| ||| ||| |||    
T  35376839 ttaggctttctttgcgagttcagagggtaggggaggggagggttttaggaaaaaggaagaagcaagtggacgaaataaaggacattgaaaggggagagct 35376740  T
Q  239 ttggggggttcat 251  Q
    |||||||||||||    
T  35376739 ttggggggttcat 35376727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 3635683 - 3635641
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggagatgagggttttg 185  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  3635683 gctttgtttgcgagtttggaggggaagggatgagagggttttg 3635641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 27085218 - 27085248
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaag 169  Q
    |||||||||||||||||||||||||||||||    
T  27085218 ttaggctttgtttgcgagtttggaggggaag 27085248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 31149799 - 31149874
Alignment:
Q  144 ctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagagg 219  Q
    ||||||||||||||||||||||||||||||  ||| ||||||        ||| |||||||||| |||||||||||    
T  31149799 ctttgtttgcgagtttggaggggaagggagtggagtgttttggaaaacatgaatgagcaagtggaagaaatagagg 31149874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 1840028 - 1839999
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  1840028 aggctttgtttgcgagtttggaggggaagg 1839999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 1840362 - 1840309
Alignment:
Q  193 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 246  Q
    ||||||||||||||| |||||| |||||||||  |||  |||||||||||||||    
T  1840362 ggaaggagcaagtggaagaaattgaggacattcggagaggagggctttgggggg 1840309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 40677065 - 40677032
Alignment:
Q  145 tttgtttgcgagtttggaggggaagggagatgag 178  Q
    |||||||||||||||||| |||||||||||||||    
T  40677065 tttgtttgcgagtttggaagggaagggagatgag 40677032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 41866329 - 41866296
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||||| |||||||||    
T  41866329 ctttaggctttgtttgcgagtttgaaggggaagg 41866296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 1111337 - 1111305
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaaggg 171  Q
    ||||||||||||||||||||||||||| |||||    
T  1111337 ttaggctttgtttgcgagtttggagggaaaggg 1111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 9309758 - 9309722
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagggaga 174  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  9309758 tttaggctttgtttgtgagtttcgaggggaagggaga 9309722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 12319151 - 12319123
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaag 169  Q
    |||||||||||||||||||||||||||||    
T  12319151 aggctttgtttgcgagtttggaggggaag 12319123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 13406299 - 13406343
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 183  Q
    |||||||||||||||| |||||||||| |||||||  ||||||||    
T  13406299 ttaggctttgtttgcgtgtttggagggaaagggaggggagggttt 13406343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 21174066 - 21174034
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||| |||||||||    
T  21174066 aggctttgtttgcgagtttggagtggaagggag 21174034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 29611921 - 29611965
Alignment:
Q  198 gagcaagtgggagaaatagaggacattgagaggagagggctttgg 242  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||    
T  29611921 gagcaagtggaagaaatataagacattgggaggagagggctttgg 29611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 33230864 - 33230896
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  33230864 aggctttgtttgggagtttggaggggaagggag 33230896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 36906452 - 36906420
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||| ||||||||||||||||||||    
T  36906452 aggctttgtttgggagtttggaggggaagggag 36906420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 1931 - 2034
Alignment:
Q  142 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 241  Q
    |||||||||||||||||||||||||||||||   || |  ||||       ||||||||||||||| ||||||||| || | || |||| ||||||||||    
T  1931 ggctttgtttgcgagtttggaggggaagggaagggaagactttgaaaaaaaggaaggagcaagtggaagaaatagaagaaaatgggaggggagggctttg 2030  T
Q  242 gggg 245  Q
    ||||    
T  2031 gggg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 6969 - 6935
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  6969 ttaggctttgtttgcgagtttggaggggaagggag 6935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 7952 - 7918
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||||||    
T  7952 ttaggctttgtttgcgagtttggaggggaagggag 7918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 82666 - 82775
Alignment:
Q  140 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 238  Q
    |||||||| |||| |||||||||||| |||||||  ||||| ||||        ||||||||||||||| ||||||||| ||| ||||||| | ||||||    
T  82666 taggctttctttgtgagtttggagggtaagggaggggagggctttggaaaaaaaggaaggagcaagtggaagaaatagatgactttgagagaaaagggct 82765  T
Q  239 ttggggggtt 248  Q
    || |||||||    
T  82766 ttcgggggtt 82775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 1844 - 1810
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  1844 ttaggctttgtttgagagtttggaggggaagggag 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 403 - 373
Alignment:
Q  143 gctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||||||||||||||||||||    
T  403 gctttgtttgcgagtttggaggggaagggag 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 35271 - 35305
Alignment:
Q  139 ttaggctttgtttgcgagtttggaggggaagggag 173  Q
    |||||||||||||| ||||||||||||||||||||    
T  35271 ttaggctttgtttgggagtttggaggggaagggag 35305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 35663 - 35562
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 240  Q
    |||||||||||| | |||||||| ||| | |||  ||||||||||       ||||||||||||||  ||||||||| ||||||| || ||||| |||||    
T  35663 aggctttgtttgggtgtttggagaggaggcgaggggagggttttggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaagagagagcttt 35564  T
Q  241 gg 242  Q
    ||    
T  35563 gg 35562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 6940 - 6969
Alignment:
Q  144 ctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||||||||||||||||||    
T  6940 ctttgtttgcgagtttggaggggaagggag 6969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 93309 - 93342
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||| |||||||||||||||||    
T  93309 ctttaggctttgtttgggagtttggaggggaagg 93342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 93705 - 93676
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagg 170  Q
    ||||||||||||||||||||||||||||||    
T  93705 aggctttgtttgcgagtttggaggggaagg 93676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 2231 - 2199
Alignment:
Q  141 aggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||| |||||||||||||||||||    
T  2231 aggctttgtttgcaagtttggaggggaagggag 2199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 26247 - 26283
Alignment:
Q  137 ctttaggctttgtttgcgagtttggaggggaagggag 173  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  26247 ctttaggctttgtttacgagtttgaaggggaagggag 26283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 46555 - 46587
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||| ||||||||||    
T  46555 tttaggctttgtttgcgagttttgaggggaagg 46587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 152232 - 152200
Alignment:
Q  138 tttaggctttgtttgcgagtttggaggggaagg 170  Q
    |||||||||||||||||||||| ||||||||||    
T  152232 tttaggctttgtttgcgagttttgaggggaagg 152200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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