View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_1 (Length: 490)
Name: NF19622_low_1
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 5 - 472
Target Start/End: Original strand, 1791138 - 1791605
Alignment:
| Q |
5 |
gagtgagaagaacaaagatttctaccacatcaatacccacaaagtgaagctatcatttccaggaaaagaatgttttcccattgtcattggaaagtacaaa |
104 |
Q |
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| T |
1791138 |
gagtgaaaagaacaaagatttctaccacatcaatacacacaaagtgaagctatcatttccaggaaaagaatgttttcccattgtcattggaaagtacaaa |
1791237 |
T |
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| Q |
105 |
tggtatggaaagaatttttagttaaagtgtttggatagtaaagtgaaactgaaaaattattatttctaatgtgtaatttcaattgatatttctattacag |
204 |
Q |
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| T |
1791238 |
tggtatggaaagaatttttagttaaagtgtttggatagtaaagtgaaactgaaaaattattatttctaatgtgtaatttcaattgatatttctattacag |
1791337 |
T |
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| Q |
205 |
gcaattagaagctatgcggttggagggcaaggatcccatggatcttgaattttccatatatactatagggggaaatatcgataatctatatcaagtagac |
304 |
Q |
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| T |
1791338 |
gcaattagaagctatgcggttggagggcaaggatcccatggatcttgaattttccatatatactatagggggaaatatcgataatctatatcaagtagac |
1791437 |
T |
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| Q |
305 |
ggcgtcgattcatttttggtgtctattgcaactcttcaccctcgctatagtcatatgcatcattttaacggtaggtttttaaattataattttaaattnn |
404 |
Q |
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| T |
1791438 |
ggcgtcgattcatttttggtgtctattgcaactcttcaccctcgctatagtcatatgcatcattttaacggtaggtttttaaattataattttaaattaa |
1791537 |
T |
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| Q |
405 |
nnnnntaaaattcctaatagtattttatttgaatcggtgcagacgatatcaaatactgcggtggggtg |
472 |
Q |
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| T |
1791538 |
aaaaataaaattcctaatagtattttatttgaatcggtgcagacgatatcaaatactgcggtggggtg |
1791605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 447
Target Start/End: Complemental strand, 14387939 - 14387904
Alignment:
| Q |
412 |
aaattcctaatagtattttatttgaatcggtgcaga |
447 |
Q |
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| T |
14387939 |
aaattactaatagtattttatttgaatcggtgcaga |
14387904 |
T |
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