View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_10 (Length: 337)
Name: NF19622_low_10
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 45 - 337
Target Start/End: Original strand, 7353209 - 7353517
Alignment:
| Q |
45 |
ttaaaagtatactatttttagtcagtatataccaactttgttgcaatgtgagatttgtt-----------------cccactatgagcttggtgcaaaga |
127 |
Q |
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| T |
7353209 |
ttaaaagtatactatttttagtcagtatatatcaactttgttacaatgtgagatttgttaaagtatgagatttgttcccaatatgagcttggtgcaaa-a |
7353307 |
T |
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| Q |
128 |
gtctatagtcacaatataataagcaaattagaatatatactaacagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcag |
227 |
Q |
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| T |
7353308 |
gtctatagtcacaatatactaagcaaattagaatatatactaacagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgaag |
7353407 |
T |
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| Q |
228 |
aatttctgcagttcaatccaagcgtctattacgactttggatgtgatagccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaa |
327 |
Q |
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| T |
7353408 |
aatttctgcagttcaatccaagcgtctattgcggctttggatgtgatagccaaatctaaaggcactgggtccttgccaaactgtgaaaaggaatcaacaa |
7353507 |
T |
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| Q |
328 |
tgaagaatgt |
337 |
Q |
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| T |
7353508 |
tgaagaatgt |
7353517 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 15493310 - 15493358
Alignment:
| Q |
176 |
ttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttg |
224 |
Q |
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| T |
15493310 |
ttcacctttgtttgacatttagagtagcaacaatgaaatggttggtttg |
15493358 |
T |
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