View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_11 (Length: 333)
Name: NF19622_low_11
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 51729102 - 51728797
Alignment:
| Q |
18 |
ggaaaaaggcaaaattctctttgaaaaagcatcaaagtggtggttttgtaatgaaggaattgaatttgaagataacactaaggtggaagctgatgtagtg |
117 |
Q |
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| T |
51729102 |
ggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcgaatttgaagataacactgaggtggaagccgatgtagtg |
51729003 |
T |
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| Q |
118 |
atccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagagccttttcgtagcctgttggagtacccctctggccttatgccattat |
217 |
Q |
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| T |
51729002 |
atccttgcaactggttttaatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgt |
51728903 |
T |
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| Q |
218 |
acaggtaagaaatacttgtttatgattcgtttcgcgttt-----tcaaaagaatatacatgagaaactaatgtcttgatttatgctaatcatgatagggg |
312 |
Q |
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| T |
51728902 |
acaggtaagaagtacttgtttgtgattcatttcgcgctttgaaattaaatgaatatactagagaaactaatagcttgatttatgctaatcatgatagagg |
51728803 |
T |
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| Q |
313 |
aaccat |
318 |
Q |
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|||||| |
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| T |
51728802 |
aaccat |
51728797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 19056739 - 19056919
Alignment:
| Q |
45 |
agcatcaaagtggtggttttgtaatgaaggaattgaatttgaagataacactaaggtggaagctgatgtagtgatccttgcaactggttttgatggaaag |
144 |
Q |
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| T |
19056739 |
agcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaa |
19056838 |
T |
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| Q |
145 |
aaaaagatcaaaaccattttaccagagccttttcgtagcctgttggagtacccctctggccttatgccattatacaggtaa |
225 |
Q |
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| T |
19056839 |
aagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccctactggtatcatgccattgtacaggtaa |
19056919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 19188460 - 19188280
Alignment:
| Q |
45 |
agcatcaaagtggtggttttgtaatgaaggaattgaatttgaagataacactaaggtggaagctgatgtagtgatccttgcaactggttttgatggaaag |
144 |
Q |
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| T |
19188460 |
agcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaa |
19188361 |
T |
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| Q |
145 |
aaaaagatcaaaaccattttaccagagccttttcgtagcctgttggagtacccctctggccttatgccattatacaggtaa |
225 |
Q |
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| T |
19188360 |
aagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccctactggtatcatgccattgtacaggtaa |
19188280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 6895633 - 6895500
Alignment:
| Q |
45 |
agcatcaaagtggtggttttgtaatgaaggaattgaatttgaagataacactaaggtggaagctgatgtagtgatccttgcaactggttttgatgg-aaa |
143 |
Q |
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||||||||||||||||||||| | | | || ||||||||||| || |||||||| |||| |||||||| || | |||||||| |||| |||||| || |
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| T |
6895633 |
agcatcaaagtggtggttttggagtaatggtattgaatttgatgacaacactaaaatggatgctgatgttgttcttcttgcaaccggttatgatggccaa |
6895534 |
T |
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| Q |
144 |
gaaaaagatcaaaaccattttaccagagcctttt |
177 |
Q |
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|| ||| ||||||| |||| |||||||||||| |
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| T |
6895533 |
aaagaagctcaaaacacttttgccagagcctttt |
6895500 |
T |
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