View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_13 (Length: 304)
Name: NF19622_low_13
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 20761176 - 20761268
Alignment:
| Q |
152 |
gcacggcctaaatctgatggttattgtatatgatcctatggctgcagtgaattcattgctttttgttgtttaaccatcgtaccattaagacat |
244 |
Q |
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| T |
20761176 |
gcacagcctaaatctgatggttattgtatatgatcctatggctgcagtgaattcgttgctttttgttgtttaaccatcgtaccattaagacat |
20761268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 20761038 - 20761125
Alignment:
| Q |
14 |
aatatattgcctaattaattttggtttctcataatattctattccagccttgctatatggtacgaaatatatgtgcacgacttgcaca |
101 |
Q |
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| T |
20761038 |
aatagattgcctaattaattttggtttctcataatattctattccagccttgctatatggtacgaaatatatgtgcacgacttgcaca |
20761125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 50558415 - 50558476
Alignment:
| Q |
178 |
tatatgatcctatggctgcagtgaattcattgctttttgttgtttaaccatcgtaccattaa |
239 |
Q |
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| T |
50558415 |
tatataatcctatggctgcagtggattcgttgcttttcgtcgctcaactatcgtaccattaa |
50558476 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 17725070 - 17724987
Alignment:
| Q |
157 |
gcctaaatctgatggttattgtatatgatcctatggctgcagtgaattcattgctttttgttgtttaaccatcgtaccattaag |
240 |
Q |
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| T |
17725070 |
gcctaaatccaaaggttattgcatatgatcctatggctgcagtggattcgttgcttttcgtctttcaactattgtaccattaag |
17724987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 24053560 - 24053504
Alignment:
| Q |
158 |
cctaaatctgatggttattgtatatgatcctatggctgcagtgaattcattgctttt |
214 |
Q |
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| T |
24053560 |
cctaaatccaatggttatggtatataatcctatggctgcagaggattcgttgctttt |
24053504 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 22956607 - 22956663
Alignment:
| Q |
184 |
atcctatggctgcagtgaattcattgctttttgttgtttaaccatcgtaccattaag |
240 |
Q |
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| T |
22956607 |
atcctatggctgcagtggattcgttgcttttcgtcgctcaactatcgtaccattaag |
22956663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 42537967 - 42537919
Alignment:
| Q |
157 |
gcctaaatctgatggttattgtatatgatcctatggctgcagtgaattc |
205 |
Q |
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| T |
42537967 |
gcctaaatccaatggttatggtatataatcctatggctgcagtggattc |
42537919 |
T |
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