View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_18 (Length: 254)
Name: NF19622_low_18
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 7353502 - 7353738
Alignment:
| Q |
1 |
caacaatgaagaatgttgaacatttggataccgtgaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatc |
100 |
Q |
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| T |
7353502 |
caacaatgaagaatgttgaacatttggataccgtaaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatc |
7353601 |
T |
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| Q |
101 |
cggttccaatttgaacaatgcaactactactgtcatgcctgaaaagtcaagccaacaacacacgcttgcggtattatccaagctccatttgttaatgaga |
200 |
Q |
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| T |
7353602 |
cggttccaatttgaacaatgcaactactgctgtcatgcctgaaaagtcaagccaacaacacatgcttgcggtattatccaagctccatttgttaatgaga |
7353701 |
T |
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| Q |
201 |
cttattgtgtgtagtataatactacccatgttaaacc |
237 |
Q |
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| T |
7353702 |
cttattgtgtgtagtataatactgcccatgttaaacc |
7353738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 15493465 - 15493551
Alignment:
| Q |
10 |
agaatgttgaacatttggataccgtgaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtg |
96 |
Q |
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| T |
15493465 |
agaatgttgaacatttggataccgagaatgcaaacatttctgaggtgttatgtgaaaatgaaactttgaatggtgctactattggtg |
15493551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 31250335 - 31250394
Alignment:
| Q |
175 |
tatccaagctccatttgttaatgagacttattgtgtgtagtataatactacccatgttaa |
234 |
Q |
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| T |
31250335 |
tatccaatttccatttgttaatgagacttattgtgtgtagtataatattgcacatgttaa |
31250394 |
T |
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