View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_2 (Length: 481)
Name: NF19622_low_2
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_2 |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 410407 - 409956
Alignment:
| Q |
20 |
tagattttcccttttaagagagaagaatgtcctcttcttgctttctttatgttcctggtattcttctatatatctcttattcagatgcgatctggttttg |
119 |
Q |
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| T |
410407 |
tagatttttccttttaagagagaagaatgtcctcttcttgctttctttatgttcctggtattcttctatatatctcttattcagatgcgatctggttttg |
410308 |
T |
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| Q |
120 |
gtaatgtgtcttccatttcgtgttcgtgaaaaataacgccaagaacgagttagggtgtttactgattctcttctcggtggttcacgatctggattcacaa |
219 |
Q |
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| T |
410307 |
gtaatgtgtcttccatttcgtgttcgtgaaaaataacgccatgaacgagttaggatgtttactgattctcttcccggtggttcac-------------aa |
410221 |
T |
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| Q |
220 |
tatggattaacaatctgattttgttcataaa---taactcttttgttctctgttttcatacttctggtcaaatccctcctctcggtgaatttagctccac |
316 |
Q |
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| T |
410220 |
tatggattaacaatctgattttgttcataaacaataactctttcgttctttgttttcatacttctggtcaaatccctcatctcggtgaatttggctccac |
410121 |
T |
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| Q |
317 |
accggttaaaaatttgtttgcacaagttttatacaacttgtgcaatattccaaccatatttactctatcaattactgttatgtcataaaatctattgaaa |
416 |
Q |
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| T |
410120 |
accggttaaaaatttgtttccacaagttttatacaacttgtgcaatattccagccatatttactctatcaattacttttatgtcataaaatctattgaaa |
410021 |
T |
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| Q |
417 |
cacaattagattaaaagttttactatatcataaaccatatatttgactgaatttatgtattaaaa |
481 |
Q |
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| T |
410020 |
cacaattagagtaaaagttttactatatcataaaacatatatttgactgaatttatgtattaaaa |
409956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 402 - 481
Target Start/End: Complemental strand, 408898 - 408819
Alignment:
| Q |
402 |
taaaatctattgaaacacaattagattaaaagttttactatatcataaaccatatatttgactgaatttatgtattaaaa |
481 |
Q |
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| T |
408898 |
taaaagctatagaaacacaattagtgtaaaagtttttgtctatcataaaccatatattttactgaatttatgtattaaaa |
408819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 425764 - 425667
Alignment:
| Q |
285 |
caaatccctcctctcggtgaatttagctccacaccggttaaaaatttgtttgcacaagttttatacaacttgtgcaatattccaaccatatttactct |
382 |
Q |
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| T |
425764 |
caaatccctcctcccggtcaattttgctccgcagcggttaaaaaactgtttgcataaactttatccaactcgtgcgatattccagctatatttactct |
425667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 26355180 - 26355048
Alignment:
| Q |
107 |
cgatctggttttggtaatgtgtcttccatttcgtgttcgtgaaaaataacgccaagaacgagttaggg-tgtttactgattctcttctcggtggttcacg |
205 |
Q |
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|||| |||||||||||| |||||||||||| |||| |||| | |||| ||| ||||||||| ||| |||| ||||| | || | ||||||||||| |
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| T |
26355180 |
cgatttggttttggtaacacgtcttccatttcacgttcatgaatagtaacaccatgaacgagttggggatgttagctgatgccctacctggtggttcacg |
26355081 |
T |
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| Q |
206 |
atctggattcacaatatggattaacaatctgat |
238 |
Q |
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| T |
26355080 |
atatgaaatcacggtatggattaacaatctgat |
26355048 |
T |
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