View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19622_low_3 (Length: 462)
Name: NF19622_low_3
Description: NF19622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19622_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 202 - 439
Target Start/End: Complemental strand, 45752597 - 45752372
Alignment:
| Q |
202 |
cgaaattgaatagataaattgcaactttcttaacttgaacaaacaattattcgagttgtttcttaagctccaagtcactgccgcagagaaagcttgtata |
301 |
Q |
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| T |
45752597 |
cgaaactgaatagataaattgcaactttcttaacttgaacaaacaattattccagttgtttcttaagctccaagtcactgccgcagagaaagcttgtata |
45752498 |
T |
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| Q |
302 |
accaccatggtccatggtatcactcctaatccaaactctcttacttatagttattttgttgttgatttacataatgaagtatcacaattttatgagcact |
401 |
Q |
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| T |
45752497 |
accaccatggtcc------------ctaatccaaactctcttacttatagttattttgttgttgatttacataatgaagtatcacaattttatgagcact |
45752410 |
T |
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| Q |
402 |
tatgcgaaaaatggcacacacaaagagggggaatatgg |
439 |
Q |
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| T |
45752409 |
tatgcgaaaaatggcacacacaaagagggggaatatgg |
45752372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 45752694 - 45752596
Alignment:
| Q |
5 |
aaaaactaaattgaaaactaaatttagccacaatgaattactatctcctaataaagtcaaggagttagtcaaaaaacaaaatgcatgaagagaatcccg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45752694 |
aaaaactaaattgaaaactaaatttagccacaatgaattactatcatctaataaagtcaagaagttagtcaaaaaacaaaatgcatgaagagaatcccg |
45752596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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