View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19623_high_17 (Length: 201)
Name: NF19623_high_17
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 1395803 - 1395972
Alignment:
| Q |
16 |
aaaggaacggaggtagtaatacatatttccgactcttcttctcacatttaaattatttgtttcttttagttaatggtcaagtgcgatttttatcatttga |
115 |
Q |
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| T |
1395803 |
aaaggaacggaggtagtaatgcatatttccgactcttcttctcacatttaaattatttgtttcttttagttaatggtcaagtgtgatttttatcatttga |
1395902 |
T |
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| Q |
116 |
acctgaaccacttattttctttgttcaattaatgaacataatctttgtatatcagtttgtggtaatcaag |
185 |
Q |
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| T |
1395903 |
acctgaactacttattttctttgttcaattaatgaacataatctttgtatatcagtttgtggtaatcaag |
1395972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 1406689 - 1406825
Alignment:
| Q |
52 |
tcttctcacatttaaattatttgtttcttttagttaatggtcaagtgcgatt---tttatcatttgaacctgaaccacttattttctttgttcaattaat |
148 |
Q |
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| T |
1406689 |
tcttctcacatttaaattattcgtttcttttagttaatggtcaagcgcgactacttttatcatttgaacctgaactacttattttctttgttcaattaat |
1406788 |
T |
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| Q |
149 |
gaacataatctttgtatatcagtttgtggtaatcaag |
185 |
Q |
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| T |
1406789 |
gaacataatctttgtatatcagtttctggtaatcaag |
1406825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 34968383 - 34968459
Alignment:
| Q |
83 |
agttaatggtcaagtgcgatttttatcatttgaacctgaaccacttattttctttgttcaattaatgaacataatct |
159 |
Q |
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| T |
34968383 |
agttaacggtcaaatgtgacttgtgtcatttgatcctcaactacttatattctttgttcaattaattaacataatct |
34968459 |
T |
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