View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19623_high_4 (Length: 463)

Name: NF19623_high_4
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19623_high_4
NF19623_high_4
[»] chr2 (2 HSPs)
chr2 (5-442)||(41070616-41071046)
chr2 (188-258)||(36904034-36904104)
[»] chr7 (2 HSPs)
chr7 (175-258)||(48488394-48488477)
chr7 (175-228)||(28514697-28514750)
[»] chr5 (2 HSPs)
chr5 (188-260)||(564896-564968)
chr5 (175-233)||(34338964-34339022)
[»] chr8 (2 HSPs)
chr8 (89-140)||(13018449-13018500)
chr8 (188-258)||(13079268-13079338)
[»] chr4 (2 HSPs)
chr4 (163-260)||(55969842-55969938)
chr4 (96-140)||(3121026-3121070)
[»] chr1 (2 HSPs)
chr1 (210-267)||(4044943-4045000)
chr1 (164-228)||(3831387-3831451)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 442
Target Start/End: Complemental strand, 41071046 - 41070616
Alignment:
Q  5 tatagttgagttggtttagtgatgttgacttgagacttcgagtgtgctagttttagtttcgattctctaaaataaaatgtctaaatattttaaaggtttt 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41071046 tatatttgagttggtttagtgatgttgacttgagacttcgagtgtgctagttttagtttcgattctctaaaataaaatgtctaaatattttaaaggtttt 41070947  T
Q  105 ggtaacaagtgtcctaagcgcattgttcaaggaacctattnnnnnnnntttgtcttagaaacacatgctaaagttataactccacaatttccaatgcaaa 204  Q
    | |||||||||||| ||| |||||||| ||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41070946 gctaacaagtgtcccaagtgcattgtttaaggaacctattaaaaaaaaattgtcttagaaacacatgttaaagttataactccacaatttccaatgcaaa 41070847  T
Q  205 cgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttcatattttaatcgaaagtgnnnnnnngttaaaacaaacgcacgca 304  Q
    ||      |||||  ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||    
T  41070846 cg------attttgaatgcttaaaaaatattataaatgcacttgttaacatttttcatattttaatcgaaagtgtttttt-gttaaaacaaacgcacgca 41070754  T
Q  305 cccaatannnnnnnaaatggtctccttcataaactaaggatcacaatctaatatctatagccaatataattcactcattagacacgagggaaataagggg 404  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41070753 cccaatatttttttaaatggtctccttcataaactaaggatcacaatctaatatctatagccaatataattcactcattagacaggagggaaataagggg 41070654  T
Q  405 aaagagatgaagtatatgtcaaaaactaacgtggggca 442  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41070653 aaagagatgaagtatatgtcaaaaactaacgtggggca 41070616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 36904034 - 36904104
Alignment:
Q  188 acaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttt 258  Q
    ||||||||||||||||| || |||| ||||||||||||||| |||  | | |  |||||||||||||||||    
T  36904034 acaatttccaatgcaaaagttgctacttttagatgcttaaacaatgcccttaggacacttgttagcatttt 36904104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 48488477 - 48488394
Alignment:
Q  175 aagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttt 258  Q
    ||||||||||   ||||||||||||||||| || |||| ||||||||||||||| |||| | | ||  ||||||||||||||||    
T  48488477 aagttataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaacaatacccttaagccacttgttagcatttt 48488394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 28514697 - 28514750
Alignment:
Q  175 aagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaa 228  Q
    ||||||||||   ||||||||||||||||| || |||| |||||||||||||||    
T  28514697 aagttataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaa 28514750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 564968 - 564896
Alignment:
Q  188 acaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttc 260  Q
    ||||||||||||||||| ||  ||| ||||||||||||||| ||| || |||  ||| |||||||||||||||    
T  564968 acaatttccaatgcaaaagttactatttttagatgcttaaacaatgtcctaaggacatttgttagcatttttc 564896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 34338964 - 34339022
Alignment:
Q  175 aagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaata 233  Q
    ||||||||||  |||| ||||||||||||| || |||| ||||||||||||||| ||||    
T  34338964 aagttataaccacacactttccaatgcaaaagttgctatttttagatgcttaaacaata 34339022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 13018449 - 13018500
Alignment:
Q  89 atattttaaaggttttggtaacaagtgtcctaagcgcattgttcaaggaacc 140  Q
    ||||||||| ||| ||| |||||||||||||||| |||||||| ||||||||    
T  13018449 atattttaagggtcttgttaacaagtgtcctaagggcattgtttaaggaacc 13018500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 13079338 - 13079268
Alignment:
Q  188 acaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttt 258  Q
    ||||||||| ||| ||| ||  ||| ||||||||||||||| |||||| |||| |||| ||||||||||||    
T  13079338 acaatttcctatgtaaaagttactacttttagatgcttaaacaatatcttaaaaacacctgttagcatttt 13079268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 55969938 - 55969842
Alignment:
Q  163 aaacacatgctaaagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttc 260  Q
    ||||||||| |||||| | ||| | |||||||  |||||||| || |||| ||||| ||||||||| |||| | | || |||||||||||||||||||    
T  55969938 aaacacatgttaaagtcacaaccctacaatttttaatgcaaaagttgctatttttatatgcttaaacaatacccttaa-acacttgttagcatttttc 55969842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 3121026 - 3121070
Alignment:
Q  96 aaaggttttggtaacaagtgtcctaagcgcattgttcaaggaacc 140  Q
    |||||| ||| |||||||||||||||| |||||||| ||||||||    
T  3121026 aaaggtgttgttaacaagtgtcctaagagcattgtttaaggaacc 3121070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 4044943 - 4045000
Alignment:
Q  210 ctaattttagatgcttaaaaaatatcataaatacacttgttagcatttttcatatttt 267  Q
    |||||| |||||||||||| ||| || |||| | |||| |||||||||||||||||||    
T  4044943 ctaattatagatgcttaaacaatgtcctaaagatacttattagcatttttcatatttt 4045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 3831451 - 3831387
Alignment:
Q  164 aacacatgctaaagttataactccacaatttccaatgcaaacgtcgctaattttagatgcttaaa 228  Q
    |||||||| |||||| ||||||  |||||||||||||||||  |  ||| |||||||||||||||    
T  3831451 aacacatgttaaagtcataactgtacaatttccaatgcaaaaatttctacttttagatgcttaaa 3831387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University