View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19623_low_1 (Length: 955)
Name: NF19623_low_1
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 44952015 - 44952367
Alignment:
| Q |
19 |
atcatggtgattggtcaatcaattaagatactacaaaactgggaaatgcgtgtggactcctcacaaatgcatgatataagctttaccataattgttaaga |
118 |
Q |
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| T |
44952015 |
atcatggtgattggtcaatcaa----gatactacaaaactgggaaatgcgtgtggactcctcacaaatgcatgatataagctttaccatatttgttaaga |
44952110 |
T |
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| Q |
119 |
gtgtggcaaccacggtctacgtacggataagaacacgggaataagagatatgacccacgtcatcgtaagttcctcttgtgcaaatctaatttacaactat |
218 |
Q |
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| T |
44952111 |
gtgtggcaaccacggtctacgtacggataagaacacgggaataagagatatgacccacgtcatcgtaagttcctcttgtgcaaagctaatttacaactat |
44952210 |
T |
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| Q |
219 |
atattactgcctctgactacattcaaacatgccaa---------------tagcaaaatccattttaaaattggaagatgatgtcaagtaattgcaaact |
303 |
Q |
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| T |
44952211 |
atattactgcctctgactacattcaaacatgccaatgctcacgtaagtattagcaaaatccattttaaaattggaagatgatgtcaagtaattgcaaact |
44952310 |
T |
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| Q |
304 |
aagtagaatattcaaaacagattcatattttagatgtatgtttgtgattgacatgtc |
360 |
Q |
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| T |
44952311 |
aactagaatattcaaaacagattcatattttagatgtatatttgtcactgacatgtc |
44952367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 593 - 788
Target Start/End: Original strand, 44952656 - 44952852
Alignment:
| Q |
593 |
ctcaaaacaatttaagtgtatgtttgattctacttttggagaaattaaaactggttctagagatatataattaatttt-tgatatgttaggtttttctag |
691 |
Q |
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| T |
44952656 |
ctcaaaacaatttaagtgcatgtttgattctacttttgaaggaattaaaactggttctagagatatataattaattttttgatatgttaggtttttctag |
44952755 |
T |
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| Q |
692 |
agttgacttgattttgtctcccaaattcattctaatttgaagcttttgattataaaatttgttgtttaccttaaattgattttacctgaaagtatcc |
788 |
Q |
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| T |
44952756 |
agttgaattgattttgtctcccaaattcattctaatttgaagcttttgattataaaatttgttgtttaccttaaattgattttacctgaatgtatcc |
44952852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 357 - 521
Target Start/End: Original strand, 44952421 - 44952585
Alignment:
| Q |
357 |
tgtcataacattgaataatatttgaagggtgcatcacagattcttgcagttgcagcaacaagttgcttatctggtgcatctgcaagtaaattcttgcatc |
456 |
Q |
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| T |
44952421 |
tgtcataacatagaataatatttgaagggtgcatcacagattcttgcagttgcagcaacaagttgcttatctggtgcatctgcaagtaaattcttgcatc |
44952520 |
T |
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| Q |
457 |
aacaatatgtccgtacaaaacattttaaggacctagtatatgattaggaagtaaattcttgcagc |
521 |
Q |
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| T |
44952521 |
aacaatatgtccgtacaaaacattttaaggacctagtatacgattaggaagtaaattcttgcagc |
44952585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 854 - 938
Target Start/End: Original strand, 44952918 - 44953010
Alignment:
| Q |
854 |
caaaataaagttttgtcataactgaaccaaacatacatta--------tgttttaaaactgaaaatgtaaaaagtaaattaacacaaaaatgt |
938 |
Q |
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| T |
44952918 |
caaaataaagttttgtcataactgaaccaaacatacattatgttttgttgttttaaaactgaaaatgtaaaaagtaaattaacacaaaaatgt |
44953010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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