View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19623_low_10 (Length: 321)
Name: NF19623_low_10
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 41645496 - 41645784
Alignment:
| Q |
16 |
atagagtaacttgtggacccaaaaataagggcaacttgttagataatctgccggtataaatttggaacaagtcctaattattcccaacaacacctacctt |
115 |
Q |
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| T |
41645496 |
atagagtaacgtgtggacccaaaaataagggcaacttgttagacaatctgccggtataaatttggaacaagtcctaattattcccaacaacaccgacctt |
41645595 |
T |
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| Q |
116 |
ttcaaatggagaataatttcctatggctctacatccttttgagtcttatagtcttaaagttattgatcctaaatgtgggaaagttattcaaaagtaaaag |
215 |
Q |
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| T |
41645596 |
tccaaatggagaataatttcttatggctctacatccttttgagtcttatagtcttaaagttattgatcctaaatgtgggaaagttattcaaaagtaaaag |
41645695 |
T |
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| Q |
216 |
cagtgacaataatacaacctcaaatcttcctccaggtccttggaagctaccaattattggaagcatacatcacctgattggttccctac |
304 |
Q |
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| T |
41645696 |
cagtgacaaaaatacaacctcaaatcttcctccaggtccttggaagctaccaattattggaagcatacatcacttgattggctccctac |
41645784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 41652689 - 41652984
Alignment:
| Q |
14 |
atatagagtaacttgtggacccaaaaataagggcaacttgttagataatctgccggtataaatttgga--------acaagtcctaattattcccaacaa |
105 |
Q |
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| T |
41652689 |
atatagaataatgtgtggacccaaaaataaaggcaacctgttagacactcagccgttataaatttggactgagatgataagccctaattattcc-aacaa |
41652787 |
T |
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| Q |
106 |
cacctaccttttcaaatggagaataatttcctatggctctacatccttttgagtcttatagtcttaaagttattgatcctaaatgtgggaaagttattca |
205 |
Q |
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| T |
41652788 |
cacttacctttccaaatggagaataatttcttatggttctccattcttttgagtcttatagtcttaaagtgtttgatcctcaatgtaggaaagagactca |
41652887 |
T |
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| Q |
206 |
aaagtaaaagcagtgacaataatacaacctcaaatcttcctccaggtccttggaagctaccaattattggaagcatacatcacctgattggttccct |
302 |
Q |
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| T |
41652888 |
aaagtaaaagcagtgataataatacaacctcaaagcttcctccaggtccttggaagctaccaatcattggaagcatacatcacatgattggctccct |
41652984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 41624212 - 41624021
Alignment:
| Q |
113 |
cttttcaaatggagaataatttcctatggctctacatccttttgagtcttatagtcttaaagttattgatcctaaatgtgggaaagttattcaaaagtaa |
212 |
Q |
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|||| ||||||||| |||||||| ||||| ||| |||| |||| |||||||| ||| | ||| || ||||||| || |||||| |||||||||||| |
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| T |
41624212 |
ctttccaaatggaggataatttcttatggttctccatcttttttagtcttatcctctaattgttttttctcctaaaagtaggaaagagattcaaaagtaa |
41624113 |
T |
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| Q |
213 |
aagcagtgacaataatacaacctcaaat---cttcctccaggtccttggaagctaccaattattggaagcatacatcacctgattggttccctac |
304 |
Q |
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| T |
41624112 |
aagcagtga-aatagtt--acctcaaataatcttcctccaggtccttggaagctaccaattattggaagcatacatcacttgattggctccctac |
41624021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 12439754 - 12439682
Alignment:
| Q |
232 |
acctcaaatcttcctccaggtccttggaagctaccaattattggaagcatacatcacctgattggttccctac |
304 |
Q |
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|||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
12439754 |
acctcagatcttcctccagggccttggaagctaccaatttttggaagcatacatcacctgtttggctccctac |
12439682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 2431735 - 2431804
Alignment:
| Q |
235 |
tcaaatcttcctccaggtccttggaagctaccaattattggaagcatacatcacctgattggttccctac |
304 |
Q |
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|||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
2431735 |
tcaaatcttcctcctgggccttggaagctaccaatttttggaagcatacatcaccttattggctccctac |
2431804 |
T |
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