View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19623_low_11 (Length: 287)
Name: NF19623_low_11
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 6915670 - 6915411
Alignment:
| Q |
21 |
cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaactaagcgaggaaccttaat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6915670 |
cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaat |
6915571 |
T |
|
| Q |
121 |
tttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6915570 |
tttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaac |
6915471 |
T |
|
| Q |
221 |
ttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaaccttcttctca |
280 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6915470 |
ttgaaagccaatgctacaagaggcccatcgggacttccagtcagctgaaccttctcctca |
6915411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
| Q |
182 |
cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct |
272 |
Q |
| |
|
|||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| ||||| |
|
|
| T |
15043971 |
cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct |
15044061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 15041844 - 15041895
Alignment:
| Q |
21 |
cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
15041844 |
cacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat |
15041895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
| Q |
122 |
ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt |
184 |
Q |
| |
|
||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15043792 |
ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt |
15043854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University