View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19623_low_17 (Length: 203)
Name: NF19623_low_17
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_17 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 13651788 - 13651618
Alignment:
| Q |
20 |
caaagtcatcagtcattgacgtgaccatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccgacgatatcttgtgtgccaagaat |
119 |
Q |
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| T |
13651788 |
caaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatcttgtgtgccaagaat |
13651689 |
T |
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| Q |
120 |
acctgttatatatgagcaaacaaacatccccatcagtagaaagagtaattgtttatcatcccattcatctc |
190 |
Q |
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| T |
13651688 |
acctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctc |
13651618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 13659269 - 13659104
Alignment:
| Q |
25 |
tcatcagtcattgacgtgaccatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccgacgatatcttgtgtgccaagaatacctg |
124 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||| ||| |
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| T |
13659269 |
tcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaatgtcttgtgttccaagaatatctg |
13659170 |
T |
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| Q |
125 |
ttatatatgagcaaacaaacatccccatcagtagaaagagtaattgtttatcatcccattcatctc |
190 |
Q |
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| T |
13659169 |
ttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctc |
13659104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 28607899 - 28607729
Alignment:
| Q |
20 |
caaagtcatcagtcattgacgtgaccatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccgacgatatcttgtgtgccaagaat |
119 |
Q |
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|||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| || || || | || ||||| |||||||| |
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| T |
28607899 |
caaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaat |
28607800 |
T |
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| Q |
120 |
acctgttatatatgagcaaacaaacatccccatcagtagaaagagtaattgtttatcatcccattcatctc |
190 |
Q |
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| T |
28607799 |
atcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
28607729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 439004 - 439101
Alignment:
| Q |
20 |
caaagtcatcagtcattgacgtgaccatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccgacgatatcttgtgtgccaaga |
117 |
Q |
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|||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||| || | ||| |||||||||||| |
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| T |
439004 |
caaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaaga |
439101 |
T |
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