View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19623_low_2 (Length: 915)

Name: NF19623_low_2
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19623_low_2
NF19623_low_2
[»] chr1 (4 HSPs)
chr1 (1-798)||(45636178-45636975)
chr1 (799-915)||(45635814-45635930)
chr1 (572-631)||(41339285-41339344)
chr1 (573-699)||(38490602-38490728)
[»] chr8 (4 HSPs)
chr8 (1-799)||(41342328-41343126)
chr8 (572-699)||(14504054-14504181)
chr8 (572-699)||(15992089-15992216)
chr8 (603-684)||(29337605-29337686)
[»] chr3 (9 HSPs)
chr3 (1-800)||(8857804-8858602)
chr3 (195-781)||(13761383-13761968)
chr3 (572-699)||(6007715-6007842)
chr3 (603-688)||(49640946-49641031)
chr3 (572-699)||(17788485-17788612)
chr3 (363-444)||(36789079-36789160)
chr3 (385-473)||(51109058-51109146)
chr3 (723-800)||(8857686-8857763)
chr3 (571-628)||(34933552-34933609)
[»] chr4 (3 HSPs)
chr4 (572-699)||(30857695-30857822)
chr4 (572-699)||(55225945-55226072)
chr4 (591-641)||(34216364-34216414)
[»] chr7 (2 HSPs)
chr7 (603-688)||(17244196-17244281)
chr7 (576-643)||(13016664-13016731)
[»] chr5 (1 HSPs)
chr5 (572-699)||(22290709-22290836)
[»] chr6 (4 HSPs)
chr6 (591-688)||(16344122-16344219)
chr6 (387-531)||(21700693-21700837)
chr6 (591-688)||(16319932-16320029)
chr6 (572-631)||(20928498-20928557)
[»] chr2 (1 HSPs)
chr2 (603-688)||(44884621-44884706)
[»] scaffold0252 (1 HSPs)
scaffold0252 (603-640)||(6294-6331)


Alignment Details
Target: chr1 (Bit Score: 674; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 798
Target Start/End: Complemental strand, 45636975 - 45636178
Alignment:
Q  1 cttgctcaaacaagaaagtttgtaaaatggatgcagccgatgcatcatcaaacacttgatgaatgacctccacgttccacgtcttagaatgagtgtgaat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45636975 cttgctcaaacaaggaagtttgtaaaatggatgcagccgatgcatcatcaaacacttgatgaatgacctccacgttccacgtcttagaatgagtgtgaat 45636876  T
Q  101 taagctatctactccaaagttcctcaacagatgcgcattggcaatattactagcaagtttagttccattccttaaccacagttcatcaataatagggatg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45636875 taagctatctactccaaagttcctcaacagatgcacattggcaatattactagcaagtttagttccattccttaaccacggttcatcaataatagggatg 45636776  T
Q  201 gaacttcctgacccgatacaccaacgagatcctcctctaacaatgaaacgagctttcaaaatacttcgccacacgtagcttggattatgtcccaaagatg 300  Q
    ||||| |||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  45636775 gaactgcctgactcgatacaccaatgggatcctcctctaacaatgaaatgagctttcaaaatacttcaccacgcgtagcttggattatgtcccaaagatg 45636676  T
Q  301 ctgtcagaaaagtattattaggaaaatagtgcgccttaaagatgcgggaagccaaagtatgaggttcagtcataaacttccatgcttgtttaccaagcat 400  Q
     |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45636675 ttgtcggaaaagtattattaggaaaatagcgtgccttaaagatgcgggaagccaaagtatgaggttcggtcataaacttccatgcttgtttaccaagcat 45636576  T
Q  401 tgccaggttgaaagcggtaaggtctttgaaactcatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaatgcctcgattatta 500  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45636575 tgctaggttgaaagcggtaaggtctttgaaacccatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaatgcctcgattatta 45636476  T
Q  501 gacccaccgtgaccctaccaaaaagcattcaacatcttctcaatagtagaaataatattcgacggcaacataaagatactcatgatataagacggaatgg 600  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||    
T  45636475 gacccaccgtgaccccaccaaaaagcattcatcatcttctcaatagtaaaaataatattcgacgacagcataaagataatcatgatataagacggaatgg 45636376  T
Q  601 cttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatctttaatgtaaga 700  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45636375 cttgcaaaacggattttatcataacctcacgacccgctttagagaggcatttgctgctccaagtattgattttctgccacacgcgatctttaacgtaaga 45636276  T
Q  701 gaaaacagttgtgcggtttctgccaatcatcgatggtaaactcaaatacttgcccgtgcctaaaacagcctgaacgcccataatgttatttatagagt 798  Q
    ||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  45636275 gaaaacagccgtgtggtttctgccaatcatcgatggtaaacccaaatacttgcccgtgcctaaaacagcccgaacgcccataatgttagttatagagt 45636178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 799 - 915
Target Start/End: Complemental strand, 45635930 - 45635814
Alignment:
Q  799 gccctccgcacaaataatgaacaaatagggagacagggggtccccttgacgcaatccccgtcccggaatgattggatcaatcaactcattattaagcaac 898  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  45635930 gccctccgcgcaaataatgaacaaatagggagacagggggtccccttgacgcaatccccgtcccggaatgattggaccaatcaactcattattaaccaac 45635831  T
Q  899 acagaatattccaccgt 915  Q
    |||||||| ||||||||    
T  45635830 acagaatagtccaccgt 45635814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 572 - 631
Target Start/End: Complemental strand, 41339344 - 41339285
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacg 631  Q
    |||||||||||| ||||| ||| |||| || ||||| |||||||||||||||||||||||    
T  41339344 aaagatactcattatatatgacagaatagcctgcaagacggattttatcataacctcacg 41339285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 573 - 699
Target Start/End: Original strand, 38490602 - 38490728
Alignment:
Q  573 aagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattt 672  Q
    |||| ||||||||  ||||| ||||||||||| | ||| || ||||||||||| || ||||| ||||||||| | || || || ||||||| ||| ||      
T  38490602 aagagactcatgacgtaagaaggaatggcttgaagaactgactttatcataacttcccgacctgctttagagagacacttactactccaagaattaatca 38490701  T
Q  673 tctgccacacgcgatctttaatgtaag 699  Q
    | |||||||| ||||| ||||| ||||    
T  38490702 tttgccacacacgatccttaatataag 38490728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 799
Target Start/End: Complemental strand, 41343126 - 41342328
Alignment:
Q  1 cttgctcaaacaagaaagtttgtaaaatggatgcagccgatgcatcatcaaacacttgatgaatgacctccacgttccacgtcttagaatgagtgtgaat 100  Q
    ||||||||| |||  ||||||||||||| || ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||  ||| ||    
T  41343126 cttgctcaaccaatgaagtttgtaaaatagaggcagccgatgcatcatcaaacacctggtgaatgacctccgcgttccacgtcttagaatgatcgtggat 41343027  T
Q  101 taagctatctactccaaagttcctcaacagatgcgcattggcaatattactagcaagtttagttccattccttaaccacagttcatcaataatagggatg 200  Q
    ||||||||| |||| || ||||||||||| |||||||||| | || |||| | |||||||||| ||||| | ||||||| |||||||||  |||| ||||    
T  41343026 taagctatcaactctaaggttcctcaacatatgcgcattgtcgatgttaccatcaagtttagtgccattacctaaccacggttcatcaagtatagagatg 41342927  T
Q  201 gaacttcctgacccgatacaccaacgagatcctcctctaacaatgaaacgagctttcaaaatacttcgccacacgtagcttggattatgtcccaaagatg 300  Q
    ||||| |||||||||||||||||||| || |||||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||| |||||||| |    
T  41342926 gaactgcctgacccgatacaccaacgggaacctcctctaacaataaaccgagctttcaagatactgcgccacgcgtaacttggattatgacccaaagaag 41342827  T
Q  301 ctgtcagaaaagtattattaggaaaatagtgcgccttaaagatgcgggaagccaaagtatgaggttcagtcataaacttccatgcttgtttaccaagcat 400  Q
    ||||||||||||| ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||||| | ||||||||| ||||||||||||||    
T  41342826 ctgtcagaaaagtgttattaggaaaataacgtgccttaaagatgcgggaaaccagagtatgaggttcagtcatgagcttccatgcctgtttaccaagcat 41342727  T
Q  401 tgccaggttgaaagcggtaaggtctttgaaactcatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaatgcctcgattatta 500  Q
     ||||| ||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41342726 agccagattgaacgctgtaaggtctttgaagcccatacctccatttgtcttgtgcatcgagagcttctcccaagataaccaatgaatgcctcgattatta 41342627  T
Q  501 gacccaccgtgaccctaccaaaaagcattcaacatcttctcaatagtagaaataatattcgacggcaacataaagatactcatgatataagacggaatgg 600  Q
    |||||||| |||||| |||||||||| |||| ||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  41342626 gacccaccatgaccccaccaaaaagcgttcatcattttctcaatagtagtaatgatattcggcggcagcataaagatactcataatataagacggaatgg 41342527  T
Q  601 cttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatctttaatgtaaga 700  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  41342526 attgcaaaacggattttatcataacctcacgacccgctttagagaggcatttgctgctccaagtattgattttctgccacacgcgatctttaacataaga 41342427  T
Q  701 gaaaacagttgtgcggtttctgccaatcatcgatggtaaactcaaatacttgcccgtgcctaaaacagcctgaacgcccataatgttatttatagagtg 799  Q
    |||||||| |||||| || |||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||| |||| |||||    
T  41342426 gaaaacagctgtgcgattcctgccaatcatcgatggtaaacccaaatacttgcccgtacctaacacagcccgaacgcccataatgttagttatggagtg 41342328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 699
Target Start/End: Complemental strand, 14504181 - 14504054
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    |||||||||||| | |||||| ||||| || |||||||| ||||||||||| ||||| ||||| ||||||||| | || || |  ||||| | |||||||    
T  14504181 aaagatactcatcacataagaaggaatagcctgcaaaacagattttatcatgacctctcgacctgctttagagagacacttaccactccaggaattgatt 14504082  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
    |||||||| || ||||| || |||||||    
T  14504081 ttctgccaaacacgatccttgatgtaag 14504054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 572 - 699
Target Start/End: Original strand, 15992089 - 15992216
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    ||||||||||||   |||||| ||||| || |||||||| ||||||||||| ||||| |||||  |||||||| | || || |  ||||| | |||||||    
T  15992089 aaagatactcatcgcataagaaggaatagcctgcaaaacagattttatcatgacctctcgacctactttagagagacacttacaactccaggaattgatt 15992188  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
    |||||||| || ||||| || |||||||    
T  15992189 ttctgccaaacacgatccttgatgtaag 15992216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 684
Target Start/End: Original strand, 29337605 - 29337686
Alignment:
Q  603 tgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgc 684  Q
    ||||||||  ||||||||||||||||||||||  |||||||| | || || |  ||||||| ||| ||||||||||||||||    
T  29337605 tgcaaaacaaattttatcataacctcacgacctactttagagagacacttaccactccaagaattaattttctgccacacgc 29337686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 800
Target Start/End: Complemental strand, 8858602 - 8857804
Alignment:
Q  1 cttgctcaaacaagaaagtttgtaaaatggatgcagccgatgcatcatcaaacacttgatgaatgacctccacgttccacgtcttagaatgagtgtgaat 100  Q
    ||||||||| ||||  ||||||| |||||||||||| ||| | |||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  8858602 cttgctcaatcaagggagtttgtgaaatggatgcagtcgaggtatcattgaacacttggtgaatgacctctacgttccacgtcttagaatgagtgtgaat 8858503  T
Q  101 taagctatctactccaaagttcctcaacagatgcgcattggcaatattactagcaagtttagttccattccttaaccacagttcatcaataatagggatg 200  Q
    ||| |||||||| |||||| ||||||||||||||||||||||||||||| |  |||||||||||||||| | ||||||  |||||||||| |||| ||||    
T  8858502 taaactatctaccccaaagctcctcaacagatgcgcattggcaatattagtgtcaagtttagttccattacctaaccatggttcatcaatgatagagatg 8858403  T
Q  201 gaacttcctgacccgatacaccaacgagatcctcctctaacaatgaaacgagctttcaaaatacttcgccacacgtagcttggattatgtcccaaagatg 300  Q
    || |  |||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||    
T  8858402 gagcaacctgacccaatgcaccaccgagatccacctctaacaatgaaacgagctttcaaaatactccgtcatacgtagcttggattatggcccaaagatg 8858303  T
Q  301 ctgtcagaaaagtattattaggaaaatagtgcgccttaaagatgcgggaagccaaagtatgaggttcagtcataaacttccatgcttgtttaccaagcat 400  Q
    ||| ||||||| ||||||||||||||||   ||||||||| || | |||  |||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  8858302 ctgacagaaaattattattaggaaaataccacgccttaaaaatacaggagaccaaagtatgaggttcagtcataaacttccctgcctatttaccaagcat 8858203  T
Q  401 tgccaggttgaaagcggtaaggtctttgaaactcatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaatgcctcgattatta 500  Q
      ||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  8858202 caccaggttgaaagcagtgaggtctttgaaacccatacctccattggtcttgtgcatcgagagcttctcccatgataaccagttaatacctcgattatta 8858103  T
Q  501 gacccaccgtgaccctaccaaaaagcattcaacatcttctcaatagtagaaataatattcgacggcaacataaagatactcatgatataagacggaatgg 600  Q
    || |||| ||||||| || ||||||| |||| ||| ||||||||||||| |||||||||||||  || |||||| |||||||||||||||||| |  |||    
T  8858102 gaaccactgtgaccccacaaaaaagcgttcatcattttctcaatagtag-aataatattcgactacagcataaaaatactcatgatataagacagggtgg 8858004  T
Q  601 cttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatctttaatgtaaga 700  Q
    |||||| ||||||||| |||||||||||| ||||| |||||||  | ||||| || ||||||||||| ||||||| |||||  |||||||||| ||||||    
T  8858003 cttgcagaacggatttaatcataacctcatgacccactttagaaagacatttactactccaagtattaattttctaccacagacgatctttaacgtaaga 8857904  T
Q  701 gaaaacagttgtgcggtttctgccaatcatcgatggtaaactcaaatacttgcccgtgcctaaaacagcctgaacgcccataatgttatttatagagtgc 800  Q
    |||||||| | |||  || || ||||||||||| ||||||| || |||||| |  || ||||||||| |||||| | |||| |||||| |||||||||||    
T  8857903 gaaaacagctctgcaattcctaccaatcatcgaaggtaaacccagatacttactggtacctaaaacaacctgaatgtccattatgttagttatagagtgc 8857804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 195 - 781
Target Start/End: Original strand, 13761383 - 13761968
Alignment:
Q  195 gggatggaacttcctgacccgatacaccaacgagatcctcctctaacaatgaaacgagctttcaaaatacttcgccacacgtagcttggattatgtccca 294  Q
    ||||||||| | |||||||| |||| ||| ||||  || |||| |||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||    
T  13761383 gggatggaagtacctgacccaatacgccaccgagccccccctcgaacaataaaacgcgcttttaaaatacttcgccaaacgtaacttgggttatgcccca 13761482  T
Q  295 aagatgctgtcagaaaagtattattaggaaaatagtgcgccttaaagatgcgggaagccaaagtatgaggttcagtcataaacttccatgcttgtttacc 394  Q
    |||| || | || |||  |||| ||| | |||||| ||||||| || ||  | ||| |||| | | |||| || |  ||||||||||| || ||||| ||    
T  13761483 aagaagcagacataaagttattgttaaggaaatagcgcgccttgaaaatctgagaaaccaacgaaagaggctctgatataaacttccaagcctgtttgcc 13761582  T
Q  395 aagcattgccaggttgaaagcggtaaggtctttgaaactcatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaatgcctcga 494  Q
    |||||| || | ||| || || || ||||| || |||| |||  | ||||  || || ||||| || | |||||||||||||| ||| ||||| || ||     
T  13761583 aagcatagctaagttaaatgcagtgaggtccttaaaacccatgacaccatgcgttttatgcatagacaacttctcccaagatagccaatgaataccccgg 13761682  T
Q  495 ttattagacccaccgtgaccctaccaaaaagcattcaacatcttctcaatagtagaaataatattcgacggcaacataaagatactcatgatataagacg 594  Q
      | | |||||||| || | | ||||||| | ||||||||||||||| || || |||||||||   |  |||| ||  || |||||||| | ||| || |    
T  13761683 ccactcgacccaccatggctccaccaaaacgaattcaacatcttctctatggtcgaaataatagaagtgggcagcaagaa-atactcataacatacgatg 13761781  T
Q  595 gaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatctttaat 694  Q
    | || || ||||  || ||||| ||||||||||| || |||||||| ||  | |||||||| ||||| || || ||||| |||||||||||||| ||||     
T  13761782 ggattgcatgcagtacagatttaatcataacctcccgtcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaac 13761881  T
Q  695 gtaagagaaaacagttgtgcggtttctgccaatcatcgatggtaaactcaaatacttgcccgtgcctaaaacagcctgaacgcccat 781  Q
     |||| |||||||| ||| || || || ||||||||||| ||||| |  | |||||| || ||||| | |||||||||||| |||||    
T  13761882 ataagcgaaaacagatgtacgattcctaccaatcatcgagggtaagcctagatacttacctgtgccaagaacagcctgaacacccat 13761968  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 699
Target Start/End: Original strand, 6007715 - 6007842
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    |||||||||||| | |||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||||| | || || |  ||||| | |||||||    
T  6007715 aaagatactcatcacataagaaggaatagcctgcaaaacagattttatcataacctctcgacctgctttagagagacacttaccactccaggaattgatt 6007814  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
     ||||||| || ||||| || |||||||    
T  6007815 ctctgccaaacacgatccttgatgtaag 6007842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 688
Target Start/End: Complemental strand, 49641031 - 49640946
Alignment:
Q  603 tgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatc 688  Q
    ||||||||  |||||||||||||||||||||| ||||||||| | || || |  ||||||| ||| ||||||||||||||||||||    
T  49641031 tgcaaaacaaattttatcataacctcacgacctgctttagagagacacttaccactccaagaattaattttctgccacacgcgatc 49640946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 572 - 699
Target Start/End: Complemental strand, 17788612 - 17788485
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    |||||||||||| | |||||| ||||| || |||||| | ||||||||||| ||||| ||||| ||||||||| | || || |  ||||| | |||||||    
T  17788612 aaagatactcatcacataagaaggaatagcctgcaaagcagattttatcatgacctctcgacctgctttagagagacacttaccactccaggaattgatt 17788513  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
    |||||||| || ||||| || |||||||    
T  17788512 ttctgccaaacacgatccttgatgtaag 17788485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 36789160 - 36789079
Alignment:
Q  363 ggttcagtcataaacttccatgcttgtttaccaagcattgccaggttgaaagcggtaaggtctttgaaactcatacctccat 444  Q
    ||||| || |||||||||||  | |||||||| | ||| ||||  |||||||| || |||||||||||||||||||||||||    
T  36789160 ggttctgttataaacttccaaccctgtttacccaacatagccaaattgaaagcagtcaggtctttgaaactcatacctccat 36789079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 51109146 - 51109058
Alignment:
Q  385 cttgtttaccaagcattgccaggttgaaagcggtaaggtctttgaaactcatacctccatttgtcttgtgcatcgagagcttctcccaa 473  Q
    |||| ||||| |||||||| | ||||||||| || ||||||||||| | |||||||||||   | || ||||| |||||||||||||||    
T  51109146 cttgcttaccgagcattgctaagttgaaagcagtgaggtctttgaagcccatacctccatgatttttatgcatagagagcttctcccaa 51109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 800
Target Start/End: Complemental strand, 8857763 - 8857686
Alignment:
Q  723 ccaatcatcgatggtaaactcaaatacttgcccgtgcctaaaacagcctgaacgcccataatgttatttatagagtgc 800  Q
    ||||||||||| ||||||| || |||||| |  || ||||||||| |||||| | |||| |||||| |||||||||||    
T  8857763 ccaatcatcgaaggtaaacccagatacttactggtacctaaaacaacctgaatgtccattatgttagttatagagtgc 8857686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 34933609 - 34933552
Alignment:
Q  571 taaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctc 628  Q
    ||||||||||||||| |||||| ||||| ||||| | ||| ||||| |||||||||||    
T  34933609 taaagatactcatgacataagatggaatagcttgaagaacagatttgatcataacctc 34933552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 699
Target Start/End: Complemental strand, 30857822 - 30857695
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    |||||||||||| | |||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||||| | || || |  ||||| | |||||||    
T  30857822 aaagatactcatcacataagaaggaatagcctgcaaaacagattttatcataacctctcgacctgctttagagagacacttaccactccaggaattgatt 30857723  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
     ||||||| || ||||| || |||||||    
T  30857722 ctctgccaaacacgatccttgatgtaag 30857695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 572 - 699
Target Start/End: Complemental strand, 55226072 - 55225945
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    |||||||||||| | |||||| ||||| || ||| |||| ||||||||||| ||||| ||||| ||||||||| | || || |  ||||| | |||||||    
T  55226072 aaagatactcatcacataagaaggaatagcctgccaaacagattttatcatgacctctcgacctgctttagagagacacttaccactccaggaattgatt 55225973  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
    |||||||| || ||||| || |||||||    
T  55225972 ttctgccaaacacgatccttgatgtaag 55225945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 641
Target Start/End: Original strand, 34216364 - 34216414
Alignment:
Q  591 gacggaatggcttgcaaaacggattttatcataacctcacgacccgcttta 641  Q
    |||||||||||||||||||||||||| ||||| || ||||| |||||||||    
T  34216364 gacggaatggcttgcaaaacggatttaatcatgacttcacgtcccgcttta 34216414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 688
Target Start/End: Original strand, 17244196 - 17244281
Alignment:
Q  603 tgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatc 688  Q
    |||||||| ||||||||||||||||||||||| ||||||||| | || || |  ||||||| ||| |||||||||||||| |||||    
T  17244196 tgcaaaacagattttatcataacctcacgacctgctttagagagacacttaccactccaagaattaattttctgccacacccgatc 17244281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 643
Target Start/End: Original strand, 13016664 - 13016731
Alignment:
Q  576 atactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttaga 643  Q
    |||||||| | |||||| ||||| || |||||||| ||||||||||||||||| |||||  |||||||    
T  13016664 atactcataacataagaaggaattgcctgcaaaacagattttatcataacctcgcgacctactttaga 13016731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 572 - 699
Target Start/End: Complemental strand, 22290836 - 22290709
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgatt 671  Q
    |||||||||||| | |||||| ||||| || |||||||| ||||||||||| ||||| ||||| ||||||||| | || || |  ||||| | |||||||    
T  22290836 aaagatactcatcacataagaaggaatagcctgcaaaacagattttatcatgacctctcgacctgctttagagagacacttaccactccaggaattgatt 22290737  T
Q  672 ttctgccacacgcgatctttaatgtaag 699  Q
    |||| ||| || ||||| || |||||||    
T  22290736 ttctaccaaacacgatccttgatgtaag 22290709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 591 - 688
Target Start/End: Complemental strand, 16344219 - 16344122
Alignment:
Q  591 gacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatc 688  Q
    |||||||||||||||||||||||||| ||| | || ||||| ||| |||||||   |||||| || ||||| | ||||||||| |||||||| |||||    
T  16344219 gacggaatggcttgcaaaacggatttaatcttgacttcacgtccctctttagacaagcatttactactccacgaattgattttttgccacacacgatc 16344122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 531
Target Start/End: Original strand, 21700693 - 21700837
Alignment:
Q  387 tgtttaccaagcattgccaggttgaaagcggtaaggtctttgaaactcatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaa 486  Q
    ||||| |||||||| || || ||||| || |  |||||||| |||| ||| |||||||  || |||||||| || | |||||||||||| ||||| ||||    
T  21700693 tgttttccaagcatagcaagattgaacgccgataggtctttaaaacccatccctccatgagttttgtgcatagacaacttctcccaagacaaccaatgaa 21700792  T
Q  487 tgcctcgattattagacccaccgtgaccctaccaaaaagcattca 531  Q
    | || ||||||||   ||| || |||||| |||||||||||||||    
T  21700793 taccacgattattctcccctccatgaccccaccaaaaagcattca 21700837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 688
Target Start/End: Complemental strand, 16320029 - 16319932
Alignment:
Q  591 gacggaatggcttgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatc 688  Q
    |||| ||||||||||||||| ||||| ||||| || ||||| |||||||||||   |||||| || |||||   ||||||||| |||||||| |||||    
T  16320029 gacgaaatggcttgcaaaacagatttaatcatgacttcacgtcccgctttagataagcatttactactccacaaattgattttttgccacacacgatc 16319932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 631
Target Start/End: Complemental strand, 20928557 - 20928498
Alignment:
Q  572 aaagatactcatgatataagacggaatggcttgcaaaacggattttatcataacctcacg 631  Q
    |||||||||||| ||||| ||| |||| || | ||| |||||||||||||||||||||||    
T  20928557 aaagatactcattatatatgacagaatagccttcaagacggattttatcataacctcacg 20928498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 603 - 688
Target Start/End: Complemental strand, 44884706 - 44884621
Alignment:
Q  603 tgcaaaacggattttatcataacctcacgacccgctttagagtggcatttgctgctccaagtattgattttctgccacacgcgatc 688  Q
    |||||||| |||||||||||||||||| |||| ||||||||| | || || |  ||||||  ||| ||||||||||||||||||||    
T  44884706 tgcaaaacagattttatcataacctcatgacctgctttagagagacacttaccactccaataattaattttctgccacacgcgatc 44884621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 640
Target Start/End: Complemental strand, 6331 - 6294
Alignment:
Q  603 tgcaaaacggattttatcataacctcacgacccgcttt 640  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  6331 tgcaaaacagattttatcattacctcacgacccgcttt 6294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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