View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19623_low_6 (Length: 445)
Name: NF19623_low_6
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_6 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 28607729 - 28608165
Alignment:
| Q |
9 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28607729 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataactgatattcttggtacacatgacgttgttggtgc |
28607828 |
T |
|
| Q |
109 |
atttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttacttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607829 |
atttgtatacgggttgattttacctcacggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttacttt |
28607928 |
T |
|
| Q |
209 |
attggaagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattc |
308 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607929 |
attggcagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattc |
28608028 |
T |
|
| Q |
309 |
taagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608029 |
taagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataat |
28608128 |
T |
|
| Q |
409 |
gctcaacatttcatgggatagaatggtattgatctac |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608129 |
gctcaacatttcatgggatagaatggtattgatctac |
28608165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 431
Target Start/End: Complemental strand, 7589567 - 7589432
Alignment:
| Q |
295 |
tgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtc |
394 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||| |||||| |||||| | ||| || ||||||||||||||||| ||||||||| ||||| || |||||| |
|
|
| T |
7589567 |
tgttcaaaagattctaaacactttgtttgccagtttcttttttggcgtacgtgttc-agatggttttgctttagacttgcttcttaatactaaaggtgtc |
7589469 |
T |
|
| Q |
395 |
gttgcattaataatgctcaacatttcatgggatagaa |
431 |
Q |
| |
|
| ||| || ||||||||||||||| |||||||||| |
|
|
| T |
7589468 |
gctgcgttgataatgctcaacattgattgggatagaa |
7589432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 7589852 - 7589668
Alignment:
| Q |
9 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgc |
108 |
Q |
| |
|
||||| ||||| ||| |||||||| |||||||||| |||||| ||||| | ||| |||||||| ||||||| || |||| | || |||||||||| |
|
|
| T |
7589852 |
gagattaatggaatgataaccaatatctctttgtggtcatgggaattttttatcgctcccacataacatatattctcggcacacctaacattgttggtgc |
7589753 |
T |
|
| Q |
109 |
atttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctag |
194 |
Q |
| |
|
| | ||| ||||||||||||| || |||| ||||||||||||||||| |||| ||| |||||||||||||||| |||||||| |
|
|
| T |
7589752 |
ttcaatgtaccggttgattttaccacacagtaa-tttgctgacatggtcacgtcaacgaccaatgattttggtggtgtgtttctag |
7589668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 439174 - 438738
Alignment:
| Q |
9 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgc |
108 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||| | ||||| ||| | |||||||||| |||| | |||| |||||| |||||||| |||||||| || |
|
|
| T |
439174 |
gagatgaatgggatgctaaccaactagtttttgtctttatgggccttatggttttctcattcatagccgatactcttggcacacatgatgttgttggggc |
439075 |
T |
|
| Q |
109 |
atttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttacttt |
208 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||| || |||||| |
|
|
| T |
439074 |
ttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtcaatgactaatgattttggtattggctttcttgcaccgatctacttt |
438975 |
T |
|
| Q |
209 |
attggaagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattc |
308 |
Q |
| |
|
||| | ||||| ||||||||| | || |||||| ||| |||| ||| ||| |||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
438974 |
tgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattt |
438875 |
T |
|
| Q |
309 |
taagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataat |
408 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
438874 |
taagcactttgtttgccactttcttctttggcatgcgtgctcaagatggttttgctctaggcttgcttctcaataccaagggtgtcgttgcactgataat |
438775 |
T |
|
| Q |
409 |
gctcaacatttcatgggatagaatggtattgatctac |
445 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
438774 |
gctcaatatttcctgggatagatcggtattgatctac |
438738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 13659104 - 13659293
Alignment:
| Q |
9 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgc |
108 |
Q |
| |
|
||||||||||| | | ||| ||||| ||||| | |||||||| ||||||||| ||||| |||||||||||||||||| ||||| ||| ||||||| || |
|
|
| T |
13659104 |
gagatgaatggaacgataaagaattactctttcttgtgatggggatttttgtttgctcatgcataacagatattcttggaacacaagacattgttggggc |
13659203 |
T |
|
| Q |
109 |
atttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcacc |
198 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||||| | || |||||||||||||| |
|
|
| T |
13659204 |
ttttgtgtacgggttgattttacctcacggtaaatttgctgatatcgtcactacactgactgatgatttttgcggcgggtttctagcacc |
13659293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 13651618 - 13651801
Alignment:
| Q |
9 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataacagatattcttggtacacatgacgttgttggtgc |
108 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||| | ||||||| | ||||||| |||||| ||||||| ||||||||| ||||| || |||| || || |
|
|
| T |
13651618 |
gagatgaatgggatgataaacaattactctttcttctgatggggatgtttgtttgctcatatataacaggtattcttggcacacaagatattgtcggagc |
13651717 |
T |
|
| Q |
109 |
atttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttct |
192 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| |||||||| | |||||| |
|
|
| T |
13651718 |
ttttgtgtacgggttgattttgcctcatggtaaatttgctgatatggtcacgtcaatgactgatgactttggtggcgagtttct |
13651801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 260 - 416
Target Start/End: Original strand, 13651869 - 13652025
Alignment:
| Q |
260 |
tggccctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgagatggtt |
359 |
Q |
| |
|
|||||||| |||||| | ||||| ||||| | ||||||| ||||||| |||||||||||||| ||||||| || |||||||||||||||| ||| ||| |
|
|
| T |
13651869 |
tggcccttaacacttgtgcttataatcttgttatgtgttccaaagattttaagcactttgtttaccactttattttttggcatgcgtactcaagacagtt |
13651968 |
T |
|
| Q |
360 |
ttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataatgctcaaca |
416 |
Q |
| |
|
||||| ||||| || |||||||||| ||||||| | ||||||| ||||||||||||| |
|
|
| T |
13651969 |
ttgctctaggcatgattctcaatactaagggtgcccttgcattgataatgctcaaca |
13652025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 254 - 441
Target Start/End: Original strand, 13659349 - 13659536
Alignment:
| Q |
254 |
ccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttccactttcttgtttggcatgcgtactcgag |
353 |
Q |
| |
|
|||| ||||||||| |||||| | |||||| ||||| | ||||||| |||||| |||||||||||||| | |||||||| ||||| |||||||||| || |
|
|
| T |
13659349 |
ccaacttggcccttaacacttgttattataatcttgttatgtgttccgaagattttaagcactttgtttgctactttcttttttggtatgcgtactcaag |
13659448 |
T |
|
| Q |
354 |
atggttttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgat |
441 |
Q |
| |
|
| |||| ||| | ||| || |||||||||||||||||| | ||||| | ||||||||||||| || |||||||||| |||||||| |
|
|
| T |
13659449 |
acagtttagctctcggcatgattctcaatacaaagggtgcccttgcactgataatgctcaacacatcttgggatagaaaagtattgat |
13659536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University