View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19623_low_7 (Length: 440)
Name: NF19623_low_7
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 45637393 - 45636965
Alignment:
| Q |
12 |
tcatcacgtgaaaggtcctgcaccaaacggaaaatcaagtctgctgcacaattagaattagaataggcatgttgtactttttcccacagcccagctctaa |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |
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| T |
45637393 |
tcatcgcgtgaaaggtcctgcaccaaacggaaaatcaagtatgctgcacaattagaattagaacaggcatgttgtactttctcccacagcccagctttaa |
45637294 |
T |
|
| Q |
112 |
gccacacctgtaccgcaaaggaacaatcaaagaaaacatgatgcatatcttcagaaggtccatcacaaacaacacaactcaggggacattgaactccttt |
211 |
Q |
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| T |
45637293 |
gccacacatgcaccgcaaaggaacaatcaaagaaaatatggtgcatatcttcagaaggtctatcacaaacaacacaactcagggggcattgaactcattt |
45637194 |
T |
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| Q |
212 |
atcctgtaaacgaacacgggtaggaaaacaccctctacacattcgccaaattatatttttattctttggtggaacttttaaccaccaaatcctagaccaa |
311 |
Q |
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| T |
45637193 |
atcctgtaaacgaacacgggtaggaaagaaccctctacacattcgccagattagatttttaatcttttgaggaacttttaaccgccaaatcccagaccaa |
45637094 |
T |
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| Q |
312 |
tatccagctcaccgcagatgagcagtatcgatcaactcctccacacaaagtcaataagcacttttgactgaatatagtcctttcctctccgccttccaaa |
411 |
Q |
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| T |
45637093 |
tattcatctctccgcagatgagcagtatcgatcaactcctccacacaaagtctataagcacttttgactgaatatagtccattcctctccgccttccaaa |
45636994 |
T |
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| Q |
412 |
gcaaagcatcatcagtcacttgctcaaac |
440 |
Q |
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| T |
45636993 |
tcaaagcatcatcagtcacttgctcaaac |
45636965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 41343538 - 41343118
Alignment:
| Q |
18 |
cgtgaaaggtcctgcaccaaacggaaaatcaagtctgctgcacaattagaattagaataggcatgttgtactttttcccacagcccagctctaagccaca |
117 |
Q |
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||||||||||||||||||||| |||| |||| |||||||||||||||||||||| | |||| ||||||| || ||||||| |||||||||| ||| | |
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| T |
41343538 |
cgtgaaaggtcctgcaccaaaaggaagatcacgtctgctgcacaattagaattaacacaggcctgttgtatcttctcccacattccagctctaatccaaa |
41343439 |
T |
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| Q |
118 |
cctgtaccgcaaaggaacaatcaaagaaaacatgatgcatatcttcagaaggtccatcacaaacaacacaactcaggggacattgaactcctttatcctg |
217 |
Q |
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| T |
41343438 |
cttgcaccgcaaagggacagccaaagaaaacatgatgcacatcttcgggaggaccatcacaaacaacacaactcagaggacattgaactcctttatcctg |
41343339 |
T |
|
| Q |
218 |
taaacgaacacgggtaggaaaacaccctctacacattcgccaaattatatttttattctttggtggaacttttaaccaccaaatcctagaccaatatcca |
317 |
Q |
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| T |
41343338 |
aagacgaacacgggtaggaaagcaccctctacacatacgccaaattagatttttaaccttaggaggaacttttaaccgccaaacaccagaccaataacca |
41343239 |
T |
|
| Q |
318 |
gctcaccgcagatgagcagtatcgatcaactcctccacacaaagtcaataagcacttttgactgaatatagtcctttcctctccgccttccaaagcaaag |
417 |
Q |
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| T |
41343238 |
gctctccgcagatgagtagtgtcgattaactcctccacacacagacgataagcacttctgactgaataaagaccagtcctctctgccttccaaatcaagg |
41343139 |
T |
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| Q |
418 |
catcatcagtcacttgctcaa |
438 |
Q |
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| T |
41343138 |
cgtcagcagtcacttgctcaa |
41343118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 25828219 - 25828276
Alignment:
| Q |
198 |
cattgaactcctttatcctgtaaacgaacacgggtaggaaaacaccctctacacattc |
255 |
Q |
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| T |
25828219 |
cattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacacattc |
25828276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 26131080 - 26131012
Alignment:
| Q |
194 |
gggacattgaactcctttatcctgtaaacgaacacgggtaggaaaacaccctctacacattcgccaaat |
262 |
Q |
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| T |
26131080 |
gggacattgcactcctttatcttgaagccgaactcaggtaggcaaacacccacgacacattcgccaaat |
26131012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 8274000 - 8273770
Alignment:
| Q |
18 |
cgtgaaaggtcctgcaccaaacggaaaatcaagtctgctgcacaattagaattagaataggcatgttgtactttttcccacagcccagctctaagccaca |
117 |
Q |
| |
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|||||||||||||| |||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| | |
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| T |
8274000 |
cgtgaaaggtcctgtaccaaaaggaaaatcacatctgctgcacaattagaattagcacaggcatgttgtactttctcccacagcccagctctaagccata |
8273901 |
T |
|
| Q |
118 |
cctgtaccgcaaaggaacaatcaaagaaaacatgatgcatatcttcagaaggtccatcacaaacaacacaactcaggggacattgaactcctttatcctg |
217 |
Q |
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| || |||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8273900 |
cttgcaccgcaaagggacagtcaaagaaaacatgatgcacatctttggaaggtccatcgcaaacaacacaactcaggggacattgaactcctttatcctg |
8273801 |
T |
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| Q |
218 |
taaacgaacacgggtaggaaaacaccctcta |
248 |
Q |
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| T |
8273800 |
tagacgaacacgggtaggaaagcaccctcta |
8273770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 36488917 - 36488957
Alignment:
| Q |
354 |
acacaaagtcaataagcacttttgactgaatatagtccttt |
394 |
Q |
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| T |
36488917 |
acacaaactcaataagcacttttgactaaatatagaccttt |
36488957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 8858989 - 8858649
Alignment:
| Q |
19 |
gtgaaaggtcctgcaccaaacggaaaatcaagtctgctgcacaattagaattagaataggcatgttgtactttttcccacagcccagctctaagccacac |
118 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||| || |||| |||||||||| | | | | |||| ||||| ||| | ||| || |||| |||||| |
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| T |
8858989 |
gtgaaagatcctgcaccaaaagaaaaatcaagtcggcaacacacttagaattagcacaagaacgttgcactttctcctgaatccctgcactaaaccacac |
8858890 |
T |
|
| Q |
119 |
ctgtaccgcaaaggaacaatcaaagaaaacatgatgcatatcttcagaaggtccatcacaaacaacacaactcaggggacattgaactcctttatcctgt |
218 |
Q |
| |
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||| ||| ||| || |||||||||||||||||||| | ||||||||| |||||||| |||| || |||||| || |||||| |||||||||||||||| |
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| T |
8858889 |
ctgcaccaaaaaagagcaatcaaagaaaacatgatgaagatcttcagacggtccatcgcaaaaaatacaacttagaggacatggaactcctttatcctga |
8858790 |
T |
|
| Q |
219 |
aaacgaacacgggtaggaaaacaccctctacacattcgccaaattatatttttattctttggtggaacttttaaccaccaaatcctagaccaatatccag |
318 |
Q |
| |
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|||||||||||| | || | ||||||||||||||| | ||| |||| ||||||| |||| | |||||| |||||| ||||||| |||||||| ||| | |
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| T |
8858789 |
aaacgaacacggatggggagacaccctctacacatacaccagattagatttttaatcttcagaggaactcttaacctgcaaatcccagaccaatttccgg |
8858690 |
T |
|
| Q |
319 |
ctcaccgcagatgagcagtatcgatcaactcctccacacaa |
359 |
Q |
| |
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||| ||| | ||||| | |||| ||||| || ||||||||| |
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| T |
8858689 |
ctctccgtaaatgagaaatatcaatcaaatcttccacacaa |
8858649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 11152934 - 11153094
Alignment:
| Q |
20 |
tgaaaggtcctgcaccaaacggaaaatcaagtctgctgcacaattagaattagaataggcatgttgtactttttcccacagcccagctctaagccacacc |
119 |
Q |
| |
|
|||||| ||||| |||||| | ||||||||||| || |||| |||||||||| | | ||| |||| ||||| |||| | ||| ||||||| ||||||| |
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| T |
11152934 |
tgaaagatcctgtaccaaaagaaaaatcaagtcggcaacacacttagaattagcacaagcacgttgcactttctcccgaatccctgctctaaaccacacc |
11153033 |
T |
|
| Q |
120 |
tgtaccgcaaaggaacaatcaaagaaaacatgatgcatatcttcagaaggtccatcacaaa |
180 |
Q |
| |
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|| ||| ||| || |||||||||||||||||||| | ||||||||| |||||||| |||| |
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| T |
11153034 |
tgcaccaaaaaagagcaatcaaagaaaacatgatgaagatcttcagacggtccatcgcaaa |
11153094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 8858650 - 8858594
Alignment:
| Q |
382 |
aatatagtcctttcctctccgccttccaaagcaaagcatcatcagtcacttgctcaa |
438 |
Q |
| |
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||||||| || | ||||||||||||||||| ||||| ||| |||||||||||||||| |
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| T |
8858650 |
aatatagaccatccctctccgccttccaaatcaaaggatcctcagtcacttgctcaa |
8858594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 20247442 - 20247374
Alignment:
| Q |
194 |
gggacattgaactcctttatcctgtaaacgaacacgggtaggaaaacaccctctacacattcgccaaat |
262 |
Q |
| |
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||||||||| ||||||||||| || | ||||| |||||||| |||||||| | ||||||||||||||| |
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| T |
20247442 |
gggacattgcactcctttatcttgaagccgaactcgggtaggcaaacacccacgacacattcgccaaat |
20247374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 9958449 - 9958381
Alignment:
| Q |
221 |
acgaacacgggtaggaaaacaccctctacacattcgccaaattatatttttattctttggtggaacttt |
289 |
Q |
| |
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|||||||||||| || ||||| |||| |||||| |||||||||| ||| ||| ||| ||||||||||| |
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| T |
9958449 |
acgaacacgggttggtaaacatcctcgacacatacgccaaattaaattcttaaccttcggtggaacttt |
9958381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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