View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19623_low_8 (Length: 390)

Name: NF19623_low_8
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19623_low_8
NF19623_low_8
[»] scaffold0029 (2 HSPs)
scaffold0029 (20-325)||(71583-71887)
scaffold0029 (195-325)||(70669-70800)
[»] chr7 (17 HSPs)
chr7 (20-323)||(45087067-45087373)
chr7 (195-325)||(45088180-45088310)
chr7 (207-325)||(45596869-45596988)
chr7 (268-325)||(21709158-21709215)
chr7 (268-324)||(26024888-26024944)
chr7 (268-325)||(21710602-21710659)
chr7 (197-253)||(30766614-30766670)
chr7 (266-325)||(23350915-23350974)
chr7 (136-175)||(29261995-29262034)
chr7 (136-175)||(29262149-29262188)
chr7 (266-325)||(36701358-36701417)
chr7 (266-325)||(39143146-39143205)
chr7 (268-325)||(10986695-10986752)
chr7 (284-325)||(26025883-26025924)
chr7 (272-325)||(29771575-29771628)
chr7 (272-325)||(39383805-39383858)
chr7 (272-325)||(40738193-40738246)
[»] chr8 (27 HSPs)
chr8 (20-325)||(9311021-9311326)
chr8 (20-325)||(14816570-14816871)
chr8 (20-325)||(14828869-14829170)
chr8 (195-322)||(9312104-9312231)
chr8 (268-325)||(39270795-39270852)
chr8 (268-325)||(39567063-39567120)
chr8 (268-324)||(45378549-45378605)
chr8 (268-323)||(39568509-39568564)
chr8 (268-323)||(44633775-44633830)
chr8 (271-322)||(44632709-44632760)
chr8 (292-325)||(14819395-14819428)
chr8 (197-253)||(13463078-13463134)
chr8 (266-325)||(4325973-4326032)
chr8 (266-325)||(5822024-5822083)
chr8 (266-325)||(5876835-5876894)
chr8 (266-325)||(9807279-9807338)
chr8 (266-325)||(11760914-11760973)
chr8 (266-325)||(21524656-21524715)
chr8 (266-325)||(29802160-29802219)
chr8 (136-175)||(30937960-30937999)
chr8 (136-175)||(30938114-30938153)
chr8 (266-325)||(45467437-45467496)
chr8 (266-312)||(162415-162461)
chr8 (272-325)||(12823266-12823319)
chr8 (272-325)||(29802576-29802629)
chr8 (266-325)||(41836493-41836553)
chr8 (273-325)||(45123621-45123673)
[»] chr4 (30 HSPs)
chr4 (20-325)||(11038577-11038882)
chr4 (20-178)||(12096408-12096568)
chr4 (207-325)||(51645912-51646029)
chr4 (266-325)||(36220599-36220658)
chr4 (213-324)||(36219408-36219518)
chr4 (268-325)||(702651-702708)
chr4 (268-325)||(756487-756544)
chr4 (268-325)||(770950-771007)
chr4 (268-325)||(35060454-35060511)
chr4 (268-323)||(16039679-16039734)
chr4 (195-325)||(11039660-11039788)
chr4 (268-325)||(701633-701690)
chr4 (268-325)||(769932-769989)
chr4 (268-325)||(16038275-16038332)
chr4 (268-325)||(35055333-35055390)
chr4 (268-325)||(757500-757557)
chr4 (266-325)||(34237946-34238005)
chr4 (266-325)||(36611042-36611101)
chr4 (239-321)||(50551386-50551468)
chr4 (197-253)||(9086365-9086421)
chr4 (48-79)||(12096242-12096273)
chr4 (266-325)||(19630763-19630822)
chr4 (266-325)||(25764362-25764421)
chr4 (266-325)||(31208493-31208552)
chr4 (266-325)||(41845501-41845560)
chr4 (266-312)||(52766286-52766332)
chr4 (272-325)||(5904505-5904558)
chr4 (207-256)||(51644805-51644854)
chr4 (266-325)||(11649504-11649564)
chr4 (197-253)||(40681431-40681487)
[»] chr1 (28 HSPs)
chr1 (23-325)||(46015614-46015915)
chr1 (20-322)||(33333159-33333467)
chr1 (20-325)||(2938567-2938873)
chr1 (195-325)||(33332177-33332307)
chr1 (195-310)||(2939718-2939833)
chr1 (195-325)||(46014701-46014831)
chr1 (268-325)||(51597961-51598018)
chr1 (268-325)||(16962010-16962067)
chr1 (268-325)||(51599434-51599491)
chr1 (268-324)||(50682588-50682644)
chr1 (274-325)||(39202965-39203016)
chr1 (197-252)||(47113044-47113099)
chr1 (102-173)||(51242726-51242797)
chr1 (268-325)||(16963427-16963484)
chr1 (197-253)||(35123127-35123183)
chr1 (197-253)||(36143065-36143121)
chr1 (266-325)||(7334927-7334986)
chr1 (266-325)||(7965509-7965568)
chr1 (266-325)||(11652876-11652935)
chr1 (266-325)||(46448740-46448799)
chr1 (20-82)||(48221697-48221753)
chr1 (108-178)||(48221621-48221690)
chr1 (266-323)||(7121819-7121876)
chr1 (272-325)||(20257968-20258021)
chr1 (272-325)||(39851546-39851599)
chr1 (266-322)||(34023573-34023629)
chr1 (150-178)||(48222304-48222332)
chr1 (273-325)||(48702214-48702266)
[»] chr3 (18 HSPs)
chr3 (20-325)||(39992247-39992552)
chr3 (211-325)||(27688486-27688600)
chr3 (211-325)||(27695519-27695633)
chr3 (211-325)||(20185757-20185871)
chr3 (235-325)||(20184448-20184538)
chr3 (195-323)||(39991507-39991634)
chr3 (268-324)||(21815909-21815965)
chr3 (268-324)||(21817401-21817457)
chr3 (197-253)||(32304304-32304360)
chr3 (266-322)||(49221510-49221566)
chr3 (266-325)||(12061624-12061683)
chr3 (266-325)||(18024916-18024975)
chr3 (266-325)||(38771617-38771676)
chr3 (266-325)||(40503731-40503790)
chr3 (266-325)||(45940679-45940738)
chr3 (207-252)||(5348837-5348881)
chr3 (266-322)||(31049077-31049133)
chr3 (266-322)||(51891299-51891355)
[»] chr2 (26 HSPs)
chr2 (20-325)||(13810337-13810636)
chr2 (20-114)||(7190155-7190258)
chr2 (218-325)||(7184881-7184989)
chr2 (268-325)||(36889748-36889805)
chr2 (266-325)||(36888338-36888397)
chr2 (195-324)||(13809426-13809554)
chr2 (102-173)||(8885895-8885966)
chr2 (197-253)||(20686603-20686659)
chr2 (197-253)||(28190415-28190471)
chr2 (269-325)||(35738363-35738419)
chr2 (266-325)||(7031805-7031864)
chr2 (102-173)||(12601474-12601545)
chr2 (197-325)||(19297527-19297655)
chr2 (266-325)||(26892464-26892523)
chr2 (266-325)||(26897903-26897962)
chr2 (266-325)||(27516159-27516218)
chr2 (266-325)||(31557091-31557150)
chr2 (266-325)||(34618521-34618580)
chr2 (266-324)||(10413995-10414053)
chr2 (266-312)||(30785836-30785882)
chr2 (266-312)||(31309646-31309692)
chr2 (272-325)||(38578187-38578240)
chr2 (273-325)||(15044739-15044791)
chr2 (266-322)||(28958114-28958170)
chr2 (266-325)||(38536263-38536323)
chr2 (197-253)||(40468118-40468174)
[»] chr6 (25 HSPs)
chr6 (20-252)||(17971601-17971832)
chr6 (211-325)||(29744781-29744895)
chr6 (211-325)||(29751084-29751198)
chr6 (217-325)||(14403688-14403796)
chr6 (268-325)||(21611915-21611972)
chr6 (268-325)||(5660192-5660249)
chr6 (20-77)||(17971508-17971565)
chr6 (268-325)||(21282817-21282874)
chr6 (268-319)||(21612882-21612933)
chr6 (268-323)||(5659106-5659162)
chr6 (197-253)||(20745657-20745713)
chr6 (197-253)||(27129809-27129865)
chr6 (266-325)||(3618781-3618840)
chr6 (266-325)||(8938886-8938945)
chr6 (266-325)||(18700401-18700460)
chr6 (266-325)||(26841605-26841664)
chr6 (266-325)||(30231476-30231535)
chr6 (266-324)||(13703382-13703440)
chr6 (272-325)||(5645546-5645599)
chr6 (195-256)||(14907091-14907152)
chr6 (48-77)||(17971443-17971472)
chr6 (272-325)||(31038321-31038374)
chr6 (197-253)||(12260518-12260574)
chr6 (266-322)||(18693635-18693691)
chr6 (293-325)||(29465755-29465787)
[»] scaffold0394 (1 HSPs)
scaffold0394 (211-325)||(14270-14385)
[»] chr5 (17 HSPs)
chr5 (201-325)||(19718824-19718948)
chr5 (266-325)||(11079629-11079688)
chr5 (266-325)||(1155964-1156023)
chr5 (266-325)||(4349495-4349554)
chr5 (266-325)||(4349874-4349933)
chr5 (266-325)||(4959561-4959620)
chr5 (266-325)||(6172340-6172399)
chr5 (266-325)||(9040743-9040802)
chr5 (266-325)||(9438237-9438296)
chr5 (266-325)||(22803589-22803648)
chr5 (266-325)||(30112709-30112768)
chr5 (266-325)||(31369926-31369985)
chr5 (266-325)||(37812231-37812290)
chr5 (266-325)||(42026663-42026722)
chr5 (272-325)||(8127472-8127525)
chr5 (266-323)||(37812550-37812607)
chr5 (273-325)||(25333194-25333246)
[»] scaffold0031 (3 HSPs)
scaffold0031 (268-325)||(123424-123481)
scaffold0031 (268-325)||(134300-134357)
scaffold0031 (268-325)||(129420-129477)
[»] scaffold0194 (2 HSPs)
scaffold0194 (266-325)||(19244-19303)
scaffold0194 (240-323)||(18070-18153)
[»] scaffold0054 (1 HSPs)
scaffold0054 (105-178)||(48706-48779)
[»] scaffold0042 (1 HSPs)
scaffold0042 (20-57)||(91004-91041)
[»] scaffold0295 (1 HSPs)
scaffold0295 (266-325)||(8215-8274)
[»] scaffold0006 (1 HSPs)
scaffold0006 (266-325)||(83385-83444)
[»] scaffold0017 (1 HSPs)
scaffold0017 (266-323)||(172910-172967)


Alignment Details
Target: scaffold0029 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 71583 - 71887
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  71583 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttcttcctat 71682  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||| ||||||||    
T  71683 ttttctagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg-ttttttgaataaaattaacggaaaggaccaaa 71781  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    |||||||||||||||||||||||||||||| |||||||        ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  71782 acatgtaacggagcaaaagttaaaataccacaacggacctttttttagttatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaat 71881  T
Q  320 taagcc 325  Q
    ||||||    
T  71882 taagcc 71887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 70800 - 70669
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnn-agttatgggaccaaaacgataccaacaa 293  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||         ||||||||||||||| ||||||||| ||    
T  70800 aataaaattaacggaaaggaccaaaacatgtaacggagtaaaagttaaaataccaaaatggactttttttttagttatgggaccaaaccgataccaaaaa 70701  T
Q  294 attagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||||||||||||||||||||    
T  70700 attagttaagggactaaaatagcaattaagcc 70669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 45087373 - 45087067
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttc--- 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |       
T  45087373 gtatgagaggatttatgggttacttcatgatgatgatgataccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttcttcctat 45087274  T
Q  117 tatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||| ||||  ||||    
T  45087273 tatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaatcctaacgtttttttgaataaaattaacggaaaagacc 45087174  T
Q  217 aaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagc 316  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||| ||||||||||| ||||||||||| |    
T  45087173 aaaacatgtaacggagcaaaagttaaaataccaaaacggacctttttttagttatgggaccaaaccgataccaaaaaattagttaaaggactaaaataac 45087074  T
Q  317 aattaag 323  Q
    |||||||    
T  45087073 aattaag 45087067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 45088180 - 45088310
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||        |||||||||||||||  ||||||||  ||    
T  45088180 aataaaattaacggaaaggaccaaaacaagtaactgagcaaaagttaaaataccaaaacggacctttttttagttatgggaccaaactgataccaaacaa 45088279  T
Q  295 ttagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||||||||||||||||||||    
T  45088280 ttagttaagggactaaaatagcaattaagcc 45088310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 45596988 - 45596869
Alignment:
Q  207 ggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgatacc-aacaaattagttaaggg 305  Q
    |||| |||||||||||||||| ||||  ||| |||||||||||||||||||        |||||||  | |||| ||||||| || ||||||||||||||    
T  45596988 ggaaaggaccaaaacatgtaatggagataaacttaaaataccaaaacggacttttttttagttatgttatcaaaccgataccaaaaaaattagttaaggg 45596889  T
Q  306 actaaaatagcaattaagcc 325  Q
    | ||||||||||||||||||    
T  45596888 attaaaatagcaattaagcc 45596869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 21709215 - 21709158
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| |||||| || |||||||||||||||| |||||||||||||||||    
T  21709215 ttatgggaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagcc 21709158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 26024944 - 26024888
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    ||||||||||||| ||||||||| |||| ||||||||||| || |||||||||||||    
T  26024944 ttatgggaccaaagcgataccaaaaaataagttaagggacgaagatagcaattaagc 26024888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 21710602 - 21710659
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||| ||||||||||| |||||| ||||| ||||    
T  21710602 ttatgggaccaaagcgataccaaaaaataagttaagggacaaaaatatcaattcagcc 21710659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 30766614 - 30766670
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  30766614 taaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 30766670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 23350974 - 23350915
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| |||||||||||||||  || |||||||||    
T  23350974 agttaagggaccaaaacgaaaccaaaaaataagttaagggactaaatgagtaattaagcc 23350915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 29262034 - 29261995
Alignment:
Q  136 gaaggagatgaaggattgagatggagaagatgaagaaaat 175  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  29262034 gaaggagatgaaggattgtgatggagaagatgaaggaaat 29261995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 29262188 - 29262149
Alignment:
Q  136 gaaggagatgaaggattgagatggagaagatgaagaaaat 175  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  29262188 gaaggagatgaaggattgtgatggagaagatgaaggaaat 29262149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 36701417 - 36701358
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  36701417 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 36701358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 39143205 - 39143146
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  39143205 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 39143146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 10986752 - 10986695
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||| ||| |||||||||||||| ||| |||||||||||| |||| || |||||||||    
T  10986752 ttataggagcaaaacgataccaaaaaaatagttaagggacgaaaagagaaattaagcc 10986695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 26025883 - 26025924
Alignment:
Q  284 ataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||| ||||||||||| |||| |||||||||||||||||    
T  26025883 ataccaagaaattagttaaaggacaaaaatagcaattaagcc 26025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29771575 - 29771628
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  29771575 gggaccaaaacgataccaattaaatagttaagggacaaaaaaagcatttaagcc 29771628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 39383858 - 39383805
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  39383858 gggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 39383805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 40738246 - 40738193
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||| |||||| ||  |||||||| |||||| |||||||||||||||||    
T  40738246 gggaccaaagcgatactaattaattagttgagggacgaaaatagcaattaagcc 40738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 9311326 - 9311021
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||    
T  9311326 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgctgctgcttaattttgttgatgctattattgttgttcttcctat 9311227  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||| |||| ||||||||    
T  9311226 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaatataaaccctaacgtttttttgaataaaattaacggaaaggaccaaa 9311127  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||| | |||||| ||||||||||||||||||||| |||        ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  9311126 acaagaaacggaacaaaagttaaaataccaaaacagacttttttttagttatgggaccaaagcgataccaaaaaattagataagggactaaaatagcaat 9311027  T
Q  320 taagcc 325  Q
    ||||||    
T  9311026 taagcc 9311021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 14816871 - 14816570
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||| |||| |||||||||||  |||    
T  14816871 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttg---ctgcttaattttgttgatgttattattgttgttcttcttat 14816775  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||| |||| | ||||||    
T  14816774 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccttaacgtttttttgaataaaattaacggaaagaaccaaa 14816675  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||| | |||||| ||||||||||||||||||||| |||        ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  14816674 acaagaaacggaacaaaagttaaaataccaaaacagac-tttttttagtaatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaat 14816576  T
Q  320 taagcc 325  Q
    ||||||    
T  14816575 taagcc 14816570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 14828869 - 14829170
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||| |||| |||||||||||  |||    
T  14828869 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgt---tgttgctgcttaattttgttgatgttattattgttgttcttcttat 14828965  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||| |||| | ||||||    
T  14828966 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccttaacgtttttttgaataaaattaacggaaagaaccaaa 14829065  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||| | |||||| ||||||||||||||||||||| |||        ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  14829066 acaagaaacggaacaaaagttaaaataccaaaacagac-tttttttagtaatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaat 14829164  T
Q  320 taagcc 325  Q
    ||||||    
T  14829165 taagcc 14829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 9312104 - 9312231
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||| |||||  ||| |||| ||||||||| || |||||||| |||||||||||||||||||        |||||||||| |||| ||||||||| |||    
T  9312104 aataatattaacagaaaggactaaaacatgtgacagagcaaaaattaaaataccaaaacggacttttttttagttatgggatcaaagcgataccaaaaaa 9312203  T
Q  295 ttagttaagggactaaaatagcaattaa 322  Q
    |||||||| |||||||||||||||||||    
T  9312204 ttagttaaaggactaaaatagcaattaa 9312231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 39270795 - 39270852
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  39270795 ttatgggaccaaaacgataccaaaaaataagttaagggacgaaaatagcaattaagcc 39270852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 39567120 - 39567063
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  39567120 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcc 39567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 45378549 - 45378605
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    ||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||    
T  45378549 ttatgggaccaaagcgataccaaaaaattatttaagggacgaaaatagcaattaagc 45378605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 39568509 - 39568564
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    |||||| ||||||||||||| || |||||||||||||||| |||||||||||||||    
T  39568509 ttatggaaccaaaacgatactaaaaaattagttaagggacaaaaatagcaattaag 39568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 44633775 - 44633830
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    ||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||    
T  44633775 ttatgggaccaaagcgataccaaaaaattagttaaggaaccaaaatagcaattaag 44633830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 44632760 - 44632709
Alignment:
Q  271 tgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    |||||||||||||||||||| |||||| ||||| ||| ||||||||||||||    
T  44632760 tgggaccaaaacgataccaaaaaattaattaagagacgaaaatagcaattaa 44632709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 14819395 - 14819428
Alignment:
Q  292 aaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||||||||||||||||||||||    
T  14819395 aaattagttaagggactaaaatagcaattaagcc 14819428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 13463078 - 13463134
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  13463078 taaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 13463134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 4325973 - 4326032
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  4325973 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 4326032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 5822024 - 5822083
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  5822024 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 5822083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 5876835 - 5876894
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  5876835 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 5876894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 9807279 - 9807338
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  9807279 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 9807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 11760914 - 11760973
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  11760914 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 11760973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 21524656 - 21524715
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  21524656 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 21524715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 29802219 - 29802160
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  29802219 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 29802160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 30937960 - 30937999
Alignment:
Q  136 gaaggagatgaaggattgagatggagaagatgaagaaaat 175  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  30937960 gaaggagatgaaggattgtgatggagaagatgaaggaaat 30937999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 30938114 - 30938153
Alignment:
Q  136 gaaggagatgaaggattgagatggagaagatgaagaaaat 175  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  30938114 gaaggagatgaaggattgtgatggagaagatgaaggaaat 30938153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 45467496 - 45467437
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  45467496 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 45467437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 162461 - 162415
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaa 312  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  162461 agttaagggaccaaaacgaaaccaaaaaataagttaagggactaaaa 162415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 12823319 - 12823266
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  12823319 gggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 12823266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29802576 - 29802629
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  29802576 gggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 29802629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 41836553 - 41836493
Alignment:
Q  266 agttatgggaccaaaacgataccaac-aaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||| ||||| |||||||||  ||||||||||||||||||||| |||| |||||||    
T  41836553 agttaagggtccaaagcgataccaattaaattagttaagggactaaaagagcatttaagcc 41836493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 45123621 - 45123673
Alignment:
Q  273 ggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  45123621 ggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 45123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 11038882 - 11038577
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||    
T  11038882 gtatgagagggtttatgggttacttcatgatgatgatgatgccaaaattgttgttggtgctgcttaattttgttgatgctattattgttgttcttcctat 11038783  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||| ||||||||    
T  11038782 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgtttttttgaataaaattaacggaaaggaccaaa 11038683  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||| | ||| || ||||||||||||||||||||| |||        ||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||    
T  11038682 acaagaaacagaacaaaagttaaaataccaaaacagacttttttttagttatgggaccaaagcaataccaaaaaattagctaagggactaaaatagcaat 11038583  T
Q  320 taagcc 325  Q
    ||||||    
T  11038582 taagcc 11038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 12096408 - 12096568
Alignment:
Q  20 gtatgagaggatttatgggttacttcatga---tgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttc 116  Q
    |||||||||||||||||||||| |||||||   |||||||||||  |||||||||||||||| | |||||||| ||||||| |  ||||||||||||| |    
T  12096408 gtatgagaggatttatgggttaattcatgatgatgatgatgatgttaaaattgttgttgttgtttcttaattttgttgatgttggtgttgttgttcttcc 12096507  T
Q  117 tatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaa 178  Q
    || |||||||||||| | |||| |||||| | |||||| |||||||||||||||||||||||    
T  12096508 ta-ttttccagaaatggatgaatgagatgcaagattgatatggagaagatgaagaaaataaa 12096568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 51645912 - 51646029
Alignment:
Q  207 ggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaaggga 306  Q
    |||| |||||||||||||||||||||  ||| |||||||||||||||||||        ||||||||||||||| ||||||||| ||||||| |||||||    
T  51645912 ggaaaggaccaaaacatgtaacggagataaacttaaaataccaaaacggac-tttttttagttatgggaccaaaccgataccaaaaaattagctaaggga 51646010  T
Q  307 ctaaaatagcaattaagcc 325  Q
    |||||||||||||||||||    
T  51646011 ctaaaatagcaattaagcc 51646029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 36220599 - 36220658
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  36220599 agttatgggaccaaaacgataccaaaaaattagttaaggtactaaaatagcaattaagcc 36220658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 36219518 - 36219408
Alignment:
Q  213 gaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaa 312  Q
    |||||||| |||||||||||  ||| ||||||||| |||||||||        ||||||||||||||| ||||||  | |||||||||||||||||||||    
T  36219518 gaccaaaatatgtaacggagataaacttaaaatactaaaacggac-tttttttagttatgggaccaaaccgatactcaaaaattagttaagggactaaaa 36219420  T
Q  313 tagcaattaagc 324  Q
    ||||||||||||    
T  36219419 tagcaattaagc 36219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 702651 - 702708
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  702651 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 702708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 756544 - 756487
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  756544 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 756487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 770950 - 771007
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  770950 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 35060454 - 35060511
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  35060454 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 35060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 16039679 - 16039734
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  16039679 ttatgggaccgaaacgataccaaaaaattagttaagggacaaaaatagcaattaag 16039734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 11039660 - 11039788
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||| ||||| ||||  ||| ||||||||| |||||||||||||||||||||||||| ||||        ||||||  || ||||  |||||||| |||    
T  11039660 aataatattaacggaaatgactaaaacatgtgacggagcaaaagttaaaataccaaaatggacttttttttagttat--gatcaaagtgataccaaaaaa 11039757  T
Q  295 ttagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||  |||||||||||||||||||||    
T  11039758 ttagttaaatgactaaaatagcaattaagcc 11039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 701690 - 701633
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||    
T  701690 ttatgggaccaaagcgataccaaaaaataagttaagggacgaaaatagcaattaagcc 701633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 769989 - 769932
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||    
T  769989 ttatgggaccaaagcgataccaaaaaataagttaagggacgaaaatagcaattaagcc 769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 16038332 - 16038275
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  16038332 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcc 16038275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 35055390 - 35055333
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  35055390 ttatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcc 35055333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 757500 - 757557
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||| ||||||||||  |||||||||||||||||    
T  757500 ttatgggaccaaagcgataccaaaaaataagttaagggatgaaaatagcaattaagcc 757557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 34237946 - 34238005
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| ||||||||| |||||||    
T  34237946 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaatagcatttaagcc 34238005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 36611101 - 36611042
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| |||||||||||||||| || |||||||||    
T  36611101 agttaagggaccaaaacgaaaccaaaaaataagttaagggactaaaagagtaattaagcc 36611042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 50551386 - 50551468
Alignment:
Q  239 ttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaatta 321  Q
    |||||||||||||||||||        |||||||| || ||| ||||||||| |||||| |||||||||||||||| ||||||    
T  50551386 ttaaaataccaaaacggacttttttttagttatggaactaaaccgataccaaaaaattaattaagggactaaaataacaatta 50551468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 9086421 - 9086365
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  9086421 taaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 9086365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 12096242 - 12096273
Alignment:
Q  48 gatgatgatgatgccaaaattgttgttgttgc 79  Q
    ||||||||||||||||||||||||||||||||    
T  12096242 gatgatgatgatgccaaaattgttgttgttgc 12096273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 19630822 - 19630763
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  19630822 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 19630763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 25764421 - 25764362
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  25764421 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 25764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 31208493 - 31208552
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  31208493 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 31208552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 41845560 - 41845501
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  ||||||||||||||| |||| |||| |||||||    
T  41845560 agttaagggaccaaagcgataccaattaattagttaagggaccaaaagagcatttaagcc 41845501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 52766332 - 52766286
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaa 312  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  52766332 agttaagggaccaaaacgaaaccaaaaaataagttaagggactaaaa 52766286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 5904558 - 5904505
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  5904558 gggaccaaaacgataccaattaaatagttaagggaccaaaaaagcatttaagcc 5904505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 51644854 - 51644805
Alignment:
Q  207 ggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 256  Q
    |||| |||||||||||||||||| ||  ||| ||||||||||||||||||    
T  51644854 ggaaaggaccaaaacatgtaacgaagataaacttaaaataccaaaacgga 51644805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 11649564 - 11649504
Alignment:
Q  266 agttatgggaccaaaacgataccaac-aaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||| ||||| |||||||||  ||||||||||||||||||||| |||| |||||||    
T  11649564 agttaagggtccaaagcgataccaattaaattagttaagggactaaaagagcatttaagcc 11649504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 40681431 - 40681487
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| |||||||||||||||||||||| |||  |||| |||| |||||||||    
T  40681431 taaaactaacggaagggaccaaaacatgtaacagagataaagataaagtaccaaaac 40681487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 23 - 325
Target Start/End: Original strand, 46015614 - 46015915
Alignment:
Q  23 tgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctatttt 122  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||    
T  46015614 tgagaggatttatgggttacttcatgatgataatgatgccaaaattgttgttgttgctccttaattttgttgatgctattattgttgttcttcctatttt 46015713  T
Q  123 tccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaaaca 222  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||| |||| |||| ||||||    
T  46015714 tccagaaatag-tgaagaagatgaaggattgagatggagaggatgaagaaaataaaccctaacgtttttttgaataaaattaacggaaaggactaaaaca 46015812  T
Q  223 tgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
     | |||||| |||||||||||||||||||||||||        ||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  46015813 agaaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaagcgataccaaaaaattacttaagggactaaaataacaattaa 46015912  T
Q  323 gcc 325  Q
    |||    
T  46015913 gcc 46015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 33333159 - 33333467
Alignment:
Q  20 gtatgagaggatttatgggttacttcatga---tgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttc 116  Q
    |||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  33333159 gtatgagaagatttatgggttacttcatgatgatgatgatgatgccaaaattgttgttgttgatgcttaatttagttgatgctattgttgttgttcttcc 33333258  T
Q  117 ---tatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaaggg 213  Q
       ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||        ||||||||||| ||||  |    
T  33333259 tattattttttcagaaatggttgaaggagatgaaggattgagatggaaaagatgaagaaaataaaccttaacgttttttttaataaaattaacggaaatg 33333358  T
Q  214 accaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaat 313  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||       | |||||||||||||  |||||||| ||||||||||||||||||||||    
T  33333359 accaaaagatgtaacggagcaaaaattaaaataccaaaacggacatttttttaattatgggaccaaactgataccaaaaaattagttaagggactaaaat 33333458  T
Q  314 agcaattaa 322  Q
    |||||||||    
T  33333459 agcaattaa 33333467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 2938873 - 2938567
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatg---ccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttc 116  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2938873 gtatgagaggatttatgggttacttcatgatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttcttcc 2938774  T
Q  117 tatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacg---nnnnnnnnaataaaattaatggaaggg 213  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||| ||||  |    
T  2938773 tattttttcagaaatagttaaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgttttttttttgaataaaattaacggaaatg 2938674  T
Q  214 accaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaat 313  Q
    | |||||||||||||||||||||| ||||||||   ||||||||        ||||||||  |||||  |||||||| ||||||||||||||||| ||||    
T  2938673 atcaaaacatgtaacggagcaaaaattaaaata-ttaaacggacctttttttagttatgg--ccaaactgataccaa-aaattagttaagggact-aaat 2938579  T
Q  314 agcaattaagcc 325  Q
    ||||||||||||    
T  2938578 agcaattaagcc 2938567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 33332307 - 33332177
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||||||||| ||||  |||||||||| ||||||||||||||||||||||| |||||||||||       ||||||||||||||| |||||||||  ||    
T  33332307 aataaaattaacggaaatgaccaaaacaagtaacggagcaaaagttaaaatatcaaaacggacatttttttagttatgggaccaaaccgataccaaacaa 33332208  T
Q  295 ttagttaagggactaaaatagcaattaagcc 325  Q
     |||||||| |||||||||||||||||||||    
T  33332207 ctagttaagagactaaaatagcaattaagcc 33332177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 2939718 - 2939833
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||| ||||       |||||| |||||||| ||||||||| | |    
T  2939718 aataaaattaacggaaatgaccaaaacaagtaacggagcaaaagttaaaataccaaaacagacatttttttagttataggaccaaaccgataccaaaata 2939817  T
Q  295 ttagttaagggactaa 310  Q
    ||||||||||||||||    
T  2939818 ttagttaagggactaa 2939833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 46014831 - 46014701
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||| ||||| |||| |||| ||||||||| || |||||||||||||||||||||||| |||        |||||||||| | || ||||||||| |||    
T  46014831 aataatattaacggaaaggactaaaacatgtgacagagcaaaagttaaaataccaaaacagacttttttttagttatgggatcgaagcgataccaaaaaa 46014732  T
Q  295 ttagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||  |||||||||||||||||||||    
T  46014731 ttagttaaatgactaaaatagcaattaagcc 46014701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 51598018 - 51597961
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||    
T  51598018 ttatgggaccaaagcgataccaaaaaataagttaagggacgaaaatagcaattaagcc 51597961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 16962067 - 16962010
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||| |||||||| | ||||||| |||||||||||||||| |||||||||||||||||    
T  16962067 ttataggaccaaagcaataccaaaaaattagttaagggacaaaaatagcaattaagcc 16962010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 51599434 - 51599491
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  51599434 ttataggatcaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 51599491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 50682588 - 50682644
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||||||||||    
T  50682588 ttatgggaccaaagcgataccaaaaaaataattaagggaccaaaatagcaattaagc 50682644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 39202965 - 39203016
Alignment:
Q  274 gaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||| |||||||||||||||| |||| ||||||||||| ||||||||||    
T  39202965 gaccaaatcgataccaacaaattaattaaaggactaaaataacaattaagcc 39203016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 47113044 - 47113099
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaa 252  Q
    ||||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||    
T  47113044 taaaattaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaa 47113099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 51242726 - 51242797
Alignment:
Q  102 tgttgttgttctttctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaa 173  Q
    |||||||||||||  || |||||||||||| | |||||||| |||| |||| | ||||||||||||||||||    
T  51242726 tgttgttgttcttaatacttttccagaaatggatgaaggagttgaaagattcaaatggagaagatgaagaaa 51242797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 16963427 - 16963484
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||| ||||||||| ||||||||||||| || |||||| ||||||||||    
T  16963427 ttatgagaccaaatcgataccaaaaaattagttaaggaacgaaaataacaattaagcc 16963484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 35123127 - 35123183
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| ||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  35123127 taaaactaacggaagggaccaaaacatgtaacgaagataaagataaaataccaaaac 35123183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 36143065 - 36143121
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| |||| |||||||||||||||||||||  |||| ||||||||||||||    
T  36143065 taaaactaacggaatggaccaaaacatgtaacggagataaagataaaataccaaaac 36143121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 7334927 - 7334986
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  7334927 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 7334986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 7965509 - 7965568
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  7965509 agttaagggaccaaaacgataccaaataaatagttaagggaccaaaagagcatttaagcc 7965568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 11652935 - 11652876
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  11652935 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 11652876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 46448740 - 46448799
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||||| |||| |||||||    
T  46448740 agttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 46448799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 48221753 - 48221697
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgc 82  Q
    |||||||| |||||||||||||||||||||||||| |      ||||||||||||||||||||    
T  48221753 gtatgagaagatttatgggttacttcatgatgatgtt------aaaattgttgttgttgctgc 48221697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 48221690 - 48221621
Alignment:
Q  108 tgttctttctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaa 178  Q
    |||||||| |||||||| |||||| | |||||| ||||||| || |||||||||||||||| | |||||||    
T  48221690 tgttctttttatttttc-agaaatggatgaaggggatgaagaatcgagatggagaagatgatggaaataaa 48221621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 7121819 - 7121876
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||    
T  7121819 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaag 7121876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 20258021 - 20257968
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  20258021 gggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 20257968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 39851546 - 39851599
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  39851546 gggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagcc 39851599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 34023573 - 34023629
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||||| |||| ||||    
T  34023573 agttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaa 34023629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 48222304 - 48222332
Alignment:
Q  150 attgagatggagaagatgaagaaaataaa 178  Q
    |||||||||||||||||||||||||||||    
T  48222304 attgagatggagaagatgaagaaaataaa 48222332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 48702214 - 48702266
Alignment:
Q  273 ggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||| |||||| || ||||||||||||||  |||||| ||||    
T  48702214 ggaccaaaacgatactaacaaaataattaagggactaaaaatgcaatttagcc 48702266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 39992247 - 39992552
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||| |||||||||||| ||||||||||| ||||    
T  39992247 gtatgagaggatttatgggttacttcatgatgacgatgatgtcaaaattattgttgctgctgcttaattttgttgatgctattattgttgttcttcctat 39992346  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||  |||||||    
T  39992347 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgttttttttaataaaattaacggaaatgaccaaa 39992446  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||| | ||| ||  |||| ||||||||||||||||| |        | ||||||||| |||  |||||||| |||||||||||||||||||||||| |||    
T  39992447 acaagaaacagaataaaaattaaaataccaaaacggtcttttttttaattatgggacaaaagtgataccaaaaaattagttaagggactaaaatagtaat 39992546  T
Q  320 taagcc 325  Q
    ||||||    
T  39992547 taagcc 39992552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 27688600 - 27688486
Alignment:
Q  211 gggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaa 310  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||| |||||||||  ||||||||||||||||||    
T  27688600 gggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgataccaaataattagttaagggactaa 27688501  T
Q  311 aatagcaattaagcc 325  Q
    |||||||||||||||    
T  27688500 aatagcaattaagcc 27688486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 27695519 - 27695633
Alignment:
Q  211 gggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaa 310  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||| |||||||||  ||||||||||||||||||    
T  27695519 gggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggactttttttcagttatgggaccaaaccgataccaaataattagttaagggactaa 27695618  T
Q  311 aatagcaattaagcc 325  Q
    |||||||||||||||    
T  27695619 aatagcaattaagcc 27695633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 20185757 - 20185871
Alignment:
Q  211 gggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaa 310  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||        |||||||||| |||| |||||| || ||||||| ||| |||||||    
T  20185757 gggaccaaaacatgtaacggaacaaaagttaaaataccaaaacaaacttttttttagttatgggatcaaaccgatacaaaaaaattaggtaatggactaa 20185856  T
Q  311 aatagcaattaagcc 325  Q
    |||||||||||||||    
T  20185857 aatagcaattaagcc 20185871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 20184538 - 20184448
Alignment:
Q  235 aaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||||||||||         ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||    
T  20184538 aaagttaaaataccaaaacggatttatttttagttatgggaccaaaccgataccaaaaaattagttaagggactaaaataacaattaagcc 20184448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 39991634 - 39991507
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||| ||||| | || |||| ||||||||| | ||||||||||||||||||||||||||||         |||||||||| |||||||||| ||| |||    
T  39991634 aataatattaacgaaaaggactaaaacatgtgatggagcaaaagttaaaataccaaaacggat-tttttttagttatgggatcaaaacgatatcaaaaaa 39991536  T
Q  295 ttagttaagggactaaaatagcaattaag 323  Q
    |||||||||| ||||||||| ||||||||    
T  39991535 ttagttaaggaactaaaataacaattaag 39991507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 21815965 - 21815909
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    |||||| |||||| |||||| || |||||||||||||||| ||||||||||||||||    
T  21815965 ttatggaaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagc 21815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 21817401 - 21817457
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    ||||||||||||| ||||||||| |||||||||||||||  ||||||| ||||||||    
T  21817401 ttatgggaccaaagcgataccaaaaaattagttaagggatgaaaatagtaattaagc 21817457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 32304360 - 32304304
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||||||| |||| |||||||||||||||||||||  |||| |||| |||||||||    
T  32304360 taaaattaacggaaaggaccaaaacatgtaacggagataaagataaagtaccaaaac 32304304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 49221566 - 49221510
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    ||||||||||| ||  ||||||||| |||||||||||||||| |||||| |||||||    
T  49221566 agttatgggactaacccgataccaaaaaattagttaagggacaaaaataacaattaa 49221510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 12061683 - 12061624
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  12061683 agttaagggaccaaaacgacaccaaaaaataagttaagggaccaaaagagtaattaagcc 12061624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 18024916 - 18024975
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| ||| ||| |||||||||    
T  18024916 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaattagtaattaagcc 18024975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 38771617 - 38771676
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  38771617 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 38771676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 40503731 - 40503790
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || |||||||||||| |||| ||||||||||||    
T  40503731 agttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcaattaagcc 40503790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 45940679 - 45940738
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || |||||||||||| ||||||||| |||||||    
T  45940679 agttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 45940738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 5348837 - 5348881
Alignment:
Q  207 ggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaa 252  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||    
T  5348837 ggaaaggaccaaaatatgtaacggag-aaaagttaaaataccaaaa 5348881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 31049077 - 31049133
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||||| |||| ||||    
T  31049077 agttaagggaccaaagcgataccaattaaatagttaagggactaaaaaagcatttaa 31049133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 51891299 - 51891355
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || ||||||    
T  51891299 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaa 51891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 13810337 - 13810636
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||| |||||||||||| | ||||||||| ||||    
T  13810337 gtatgagaggatttatgggttacttcatgatgatgatgatgtcaaaa---ttgttgttgctgcttaattttgttgatgctattatcgttgttcttcctat 13810433  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    |||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||        |||||||||||  |||  |||||||    
T  13810434 ttttccagaaatag-tgaaggagacgatgaattgagatggagaagatgaagaaaataaaccctaacgtttttttgaataaaattaacagaaatgaccaaa 13810532  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||| | ||| || ||||||||||||||||||| |||||        ||||||||||||||| ||||||||  |||||||||||| ||||||||| |||||    
T  13810533 acaagaaacagaacaaaagttaaaataccaaatcggacttttttttagttatgggaccaaagcgatacca--aaattagttaagagactaaaattgcaat 13810630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 7190258 - 7190155
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatg---------ccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgt 110  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7190258 gtatgagaggatttatgggttacttcatgatgatgatgatgatgatgatgccaaaatcgttgttgttgctgcttaatttagttgatgctattgttgttgt 7190159  T
Q  111 tctt 114  Q
    ||||    
T  7190158 tctt 7190155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 7184989 - 7184881
Alignment:
Q  218 aaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnn-agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagc 316  Q
    ||||| ||||||||| ||||||||||||||||||||||||         |||||||||| |||| ||||||||| |||||||||||| ||||||||||||    
T  7184989 aaacaagtaacggagtaaaagttaaaataccaaaacggaccttttttttagttatgggatcaaaccgataccaaaaaattagttaagagactaaaatagc 7184890  T
Q  317 aattaagcc 325  Q
    |||||||||    
T  7184889 aattaagcc 7184881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 36889748 - 36889805
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  36889748 ttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcc 36889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 36888397 - 36888338
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  36888397 agttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcc 36888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 324
Target Start/End: Complemental strand, 13809554 - 13809426
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa 294  Q
    ||||| ||||| |||| |||| ||||||||| ||||| ||||||||||||||| |||||||||        | |||| ||| |||| ||||||||| |||    
T  13809554 aataatattaacggaaaggactaaaacatgtgacggaacaaaagttaaaatactaaaacggac-tttttttaattataggatcaaagcgataccaaaaaa 13809456  T
Q  295 ttagttaagggactaaaatagcaattaagc 324  Q
    ||||||||||| ||||||||| ||||||||    
T  13809455 ttagttaagggcctaaaatagaaattaagc 13809426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 8885966 - 8885895
Alignment:
Q  102 tgttgttgttctttctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaa 173  Q
    |||||||||||||  || |||||||||||| | |||| ||| |||| |||| ||||||||||||||||||||    
T  8885966 tgttgttgttcttaatacttttccagaaatggatgaatgagttgaaagattcagatggagaagatgaagaaa 8885895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 20686603 - 20686659
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  20686603 taaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 20686659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 28190415 - 28190471
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| ||||||||||||||||||||||||||  |||| |||| |||||||||    
T  28190415 taaaactaacggaagggaccaaaacatgtaacggagataaagataaagtaccaaaac 28190471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 35738419 - 35738363
Alignment:
Q  269 tatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||| ||||||||| ||||||||||||| || ||||||| |||||||||    
T  35738419 tatggaaccaaagcgataccaaaaaattagttaaggaacgaaaatagtaattaagcc 35738363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 7031864 - 7031805
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  7031864 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 7031805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 12601545 - 12601474
Alignment:
Q  102 tgttgttgttctttctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaa 173  Q
    |||||||||||||  || ||||||| |||| | |||||||| |||| |||| |||||||| |||||||||||    
T  12601545 tgttgttgttcttcatacttttccataaatggatgaaggagttgaaagattcagatggaggagatgaagaaa 12601474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 19297655 - 19297527
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaatt 296  Q
    ||||||||| |||||||||||||||||||||| |||  |||  |||| |||||||||   |        | ||| |||||||||||||||||||  |||     
T  19297655 taaaattaaaggaagggaccaaaacatgtaacagagataaaaataaagtaccaaaacaatcttttttttacttaagggaccaaaacgataccaaataata 19297556  T
Q  297 agttaagggactaaaatagcaattaagcc 325  Q
    | ||||||||| |||| ||||||||||||    
T  19297555 acttaagggacgaaaagagcaattaagcc 19297527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 26892523 - 26892464
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||| |||||||| ||||| |||| ||||||||||| |||| ||||||||||||    
T  26892523 agttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaaagagcaattaagcc 26892464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 26897962 - 26897903
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||| |||||||| ||||| |||| ||||||||||| |||| ||||||||||||    
T  26897962 agttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaaagagcaattaagcc 26897903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 27516218 - 27516159
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  27516218 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 27516159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 31557150 - 31557091
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||||| |||| |||||||    
T  31557150 agttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 31557091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 34618521 - 34618580
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||||| |||| |||||||    
T  34618521 agttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 34618580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 10414053 - 10413995
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    ||||| ||||||||||||| ||||| |||| | ||||||||| ||||||| ||||||||    
T  10414053 agttaagggaccaaaacgaaaccaaaaaataaattaagggaccaaaatagtaattaagc 10413995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 30785882 - 30785836
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaa 312  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  30785882 agttaagggaccaaaacgaaaccaaaaaataagttaagggactaaaa 30785836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 31309646 - 31309692
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaa 312  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  31309646 agttaagggaccaaaacgaaaccaaaaaataagttaagggactaaaa 31309692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 38578187 - 38578240
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  38578187 gggaccaaaacgacaccaaaaaataagttaagggaccaaaagagtaattaagcc 38578240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 15044791 - 15044739
Alignment:
Q  273 ggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||| |||||||||  || |||||||||||| ||||||||| |||||||    
T  15044791 ggaccaaagcgataccaattaaatagttaagggaccaaaatagcacttaagcc 15044739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 28958114 - 28958170
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || ||||||    
T  28958114 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaa 28958170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 38536323 - 38536263
Alignment:
Q  266 agttatgggaccaaaacgataccaa-caaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  ||| |||||||||||| |||| |||| |||||||    
T  38536323 agttaagggaccaaaacgataccaagtaaaatagttaagggaccaaaagagcatttaagcc 38536263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 40468174 - 40468118
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| |||||||||||||||||||| |||||  |||| |||| |||||||||    
T  40468174 taaaactaacggaagggaccaaaacatgtatcggagataaagataaagtaccaaaac 40468118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 17971601 - 17971832
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgttgctgcttaatttagttgatgctattgttgttgttctttctat 119  Q
    |||||| ||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| ||||    
T  17971601 gtatgaaagggtttatgggtttcttcttgatgatgatgatgccaaaattgttgttcttgctgcttaattttgttgatactactgttgttgttcttcctat 17971700  T
Q  120 ttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaaccctaacgnnnnnnnnaataaaattaatggaagggaccaaa 219  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||| ||||         ||||||||||| |||| ||||||||    
T  17971701 ttttccagaaataattgaaggatatgaaggattgagatggagaacatgaagaaaa-aaaccgtaactttttttggaataaaattaacggaaaggaccaaa 17971799  T
Q  220 acatgtaacggagcaaaagttaaaataccaaaa 252  Q
    |  || |||||||  ||| ||||||||||||||    
T  17971800 atgtgcaacggagataaacttaaaataccaaaa 17971832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 29744895 - 29744781
Alignment:
Q  211 gggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaa 310  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||| |||||||||  ||||||||||||||||||    
T  29744895 gggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgataccaaataattagttaagggactaa 29744796  T
Q  311 aatagcaattaagcc 325  Q
    |||||||||||||||    
T  29744795 aatagcaattaagcc 29744781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 29751084 - 29751198
Alignment:
Q  211 gggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaa 310  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||| |||||||||  ||||||||||||||||||    
T  29751084 gggaccaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgataccaaataattagttaagggactaa 29751183  T
Q  311 aatagcaattaagcc 325  Q
    |||||||||||||||    
T  29751184 aatagcaattaagcc 29751198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 14403796 - 14403688
Alignment:
Q  217 aaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagc 316  Q
    |||||||||||||| ||||||||||||||||||||| ||||        |||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  14403796 aaaacatgtaacggcgcaaaagttaaaataccaaaatggaccaaattttagttatgggaccaaagtgataccaacaaattaggtaagggactaaaatagc 14403697  T
Q  317 aattaagcc 325  Q
    |||||||||    
T  14403696 aattaagcc 14403688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 21611972 - 21611915
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  21611972 ttatgggaccaaatcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 21611915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 5660192 - 5660249
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  5660192 ttatgagaccaaaacgataccaaaaaattagtttagggacgaaaatagcaattaagcc 5660249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17971508 - 17971565
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatgatgccaaaattgttgttgtt 77  Q
    |||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  17971508 gtatgaaagggtttatgggtttcttcttgatgatgatgatgccaaaattgttgttgtt 17971565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 21282874 - 21282817
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| |||||| || |||||| ||||||||| |||||||||||||||||    
T  21282874 ttatgggaccaaagcgatacaaaaaaattaattaagggacgaaaatagcaattaagcc 21282817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 21612882 - 21612933
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaat 319  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||||| ||||    
T  21612882 ttatgggaccaaaacgataccaaaaaattaattaagggacgaaaataacaat 21612933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 5659162 - 5659106
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggac-taaaatagcaattaag 323  Q
    |||||||||||||  |||||||| ||||||||||||||||  |||||||||||||||    
T  5659162 ttatgggaccaaagtgataccaaaaaattagttaagggacgaaaaatagcaattaag 5659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 20745713 - 20745657
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| |||||||||||||||| |||||||||||||  |||| |||| |||||||||    
T  20745713 taaaactaatggaagggaccaacacatgtaacggagataaagataaagtaccaaaac 20745657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 27129809 - 27129865
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||||||||||||||||||||||||||||||  |||| |||| || ||||||    
T  27129809 taaaactaatggaagggaccaaaacatgtaacggagataaagataaagtatcaaaac 27129865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 3618840 - 3618781
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||||| |||| |||||||    
T  3618840 agttaagggaccaaagcgataccaattaaatagttaagggactaaaaaagcatttaagcc 3618781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 8938945 - 8938886
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  8938945 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 8938886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 18700460 - 18700401
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  18700460 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 18700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 26841605 - 26841664
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  26841605 agttaagggaccaaaacgaaaccaaaaaataagttaagggacaaaaagagtaattaagcc 26841664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 30231535 - 30231476
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||||| || | |||||||||||||||||||| ||||   ||||||||||    
T  30231535 agttatgggaccaaaatgaaaacaacaaattagttaagggaccaaaagtccaattaagcc 30231476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 13703440 - 13703382
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagc 324  Q
    ||||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||||    
T  13703440 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaagagcatttaagc 13703382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 5645599 - 5645546
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  5645599 gggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 5645546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 14907152 - 14907091
Alignment:
Q  195 aataaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacgga 256  Q
    ||||||||||| ||||  || |||||| ||||||||||  |||||| |||||||||||||||    
T  14907152 aataaaattaacggaaatgatcaaaacgtgtaacggagataaagtttaaataccaaaacgga 14907091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 17971443 - 17971472
Alignment:
Q  48 gatgatgatgatgccaaaattgttgttgtt 77  Q
    ||||||||||||||||||||||||||||||    
T  17971443 gatgatgatgatgccaaaattgttgttgtt 17971472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 31038374 - 31038321
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  31038374 gggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 31038321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 12260574 - 12260518
Alignment:
Q  197 taaaattaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaac 253  Q
    ||||| ||| |||||||||||||||||||||| |||  |||| |||| |||||||||    
T  12260574 taaaactaacggaagggaccaaaacatgtaacagagataaagataaagtaccaaaac 12260518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 18693635 - 18693691
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaa 322  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || ||||||    
T  18693635 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaaaagtaattaa 18693691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 29465787 - 29465755
Alignment:
Q  293 aattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||| |||||||||||||||||    
T  29465787 aattagttaagggacgaaaatagcaattaagcc 29465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 14385 - 14270
Alignment:
Q  211 gggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaa-ttagttaagggacta 309  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||        ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  14385 gggactaaaacatgtaacggaacaaaagttaaaataccaaaacggacttttttttagttatgggaccaaaccgataccaaaaaaattagttaagggacta 14286  T
Q  310 aaatagcaattaagcc 325  Q
    ||||||||||||||||    
T  14285 aaatagcaattaagcc 14270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 19718824 - 19718948
Alignment:
Q  201 attaatggaagggaccaaaacatgtaacggagcaaaagttaaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagtt 300  Q
    ||||| |||| |||| ||||||||| |||||  |||||||||||||||||||||||         |||||| ||| |||| ||||||||| |||||||||    
T  19718824 attaacggaaaggactaaaacatgtgacggaataaaagttaaaataccaaaacggatttttttttagttataggatcaaagcgataccaaaaaattagtt 19718923  T
Q  301 aagggactaaaatagcaattaagcc 325  Q
    || ||||||||||||||||||||||    
T  19718924 aaaggactaaaatagcaattaagcc 19718948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 11079629 - 11079688
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| |||||||||||||||||||  || |||||||||||| ||||||||| |||||||    
T  11079629 agttaagggaccaaaacgataccaattaaatagttaagggaccaaaatagcatttaagcc 11079688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 1156023 - 1155964
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  1156023 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 1155964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 4349554 - 4349495
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||| |||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  4349554 agttatgggatcaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 4349495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 4349874 - 4349933
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  4349874 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 4349933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 4959620 - 4959561
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || |||||||||||| ||||||||| |||||||    
T  4959620 agttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 4959561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 6172340 - 6172399
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  6172340 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 6172399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 9040802 - 9040743
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  9040802 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 9040743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 9438296 - 9438237
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  9438296 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 9438237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 22803589 - 22803648
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  22803589 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 22803648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 30112709 - 30112768
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || || |||||||||||||| ||||||||||||    
T  30112709 agttaagggaccaaagcgataccaattaaatacttaagggactaaaagagcaattaagcc 30112768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 31369926 - 31369985
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  31369926 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 31369985  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 37812290 - 37812231
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  37812290 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 37812231  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 42026663 - 42026722
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  42026663 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 42026722  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 8127525 - 8127472
Alignment:
Q  272 gggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  8127525 gggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 8127472  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 37812550 - 37812607
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||    
T  37812550 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaaaagtaattaag 37812607  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 25333194 - 25333246
Alignment:
Q  273 ggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||| |||||||||  || |||||||||||| ||||||||| |||||||    
T  25333194 ggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 25333246  T

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Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 123481 - 123424
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| | ||||||| |||||||||||||||| |||||||||||||||||    
T  123481 ttatgggaccaaagcaataccaagaaattagttaagggacgaaaatagcaattaagcc 123424  T

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Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 134357 - 134300
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||| | ||||||| |||||||||||||||| |||||||||||||||||    
T  134357 ttatgggaccaaagcaataccaagaaattagttaagggacgaaaatagcaattaagcc 134300  T

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Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 129420 - 129477
Alignment:
Q  268 ttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    |||||||||||||  |||||||| |||| ||||||||||| |||||| ||||||||||    
T  129420 ttatgggaccaaagtgataccaaaaaataagttaagggacgaaaataacaattaagcc 129477  T

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Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 19244 - 19303
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||||||||||||| ||||| ||| ||||||||||||| |||||| || ||||||||||    
T  19244 agttatgggaccaaaccgatatcaaaaaattagttaaggaactaaagtaacaattaagcc 19303  T

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Target: scaffold0194; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 18153 - 18070
Alignment:
Q  240 taaaataccaaaacggacannnnnnnagttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    |||| ||||||||||||||       ||||||| ||||||| ||||||  | |||||||||||||||||||||||| |||||||    
T  18153 taaactaccaaaacggacatttttttagttatgagaccaaaccgatactcaaaaattagttaagggactaaaatagtaattaag 18070  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 48706 - 48779
Alignment:
Q  105 tgttgttctttctatttttccagaaatagttgaaggagatgaaggattgagatggagaagatgaagaaaataaa 178  Q
    ||||||||||  || ||||| |||||| | |||||| ||||||||||| ||||||||||| ||||| |||||||    
T  48706 tgttgttcttcatacttttctagaaattgatgaaggtgatgaaggattcagatggagaaggtgaaggaaataaa 48779  T

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Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 91004 - 91041
Alignment:
Q  20 gtatgagaggatttatgggttacttcatgatgatgatg 57  Q
    |||||||| |||||||||||||||||||||||||||||    
T  91004 gtatgagaagatttatgggttacttcatgatgatgatg 91041  T

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Target: scaffold0295 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 8215 - 8274
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||||    
T  8215 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaagcc 8274  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 83385 - 83444
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaagcc 325  Q
    ||||| ||||||||| |||||||||  || |||||||||||| ||||||||| |||||||    
T  83385 agttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 83444  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 172910 - 172967
Alignment:
Q  266 agttatgggaccaaaacgataccaacaaattagttaagggactaaaatagcaattaag 323  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||| |||| || |||||||    
T  172910 agttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaaagagtaattaag 172967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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