View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19623_low_9 (Length: 360)
Name: NF19623_low_9
Description: NF19623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19623_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 27697868 - 27697783
Alignment:
| Q |
258 |
tcgcgggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgttcaattcctccat |
343 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27697868 |
tcgcgggcaatggaaggacaagtaacagggataacattgacatttcctagacgaatacatgctatttcagtgttcaattcttccat |
27697783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 27701898 - 27701788
Alignment:
| Q |
142 |
ctttgtgcgaacaaagtgggaccttttctttgaccaacgaaaggggataagtgagtattatggtgtttaaggttgagaaatcactcggaatattttttcg |
241 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||| ||||| |||||| ||||||||| | |
|
|
| T |
27701898 |
ctttgtgtgaacgaagtgggaccttttctttgactaacgaaagggaataagtgagta------tctttaaggtttagaaaccactcgaaatatttttgct |
27701805 |
T |
|
| Q |
242 |
aagtaaggatagattat |
258 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
27701804 |
aagcaaggatagattat |
27701788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 27747086 - 27747167
Alignment:
| Q |
262 |
gggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgttcaattcctccat |
343 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| ||||||||||||||| ||||| |||| ||||||||||||||| ||||| |
|
|
| T |
27747086 |
gggcaatggtgggacaggtaacaggaataacatggacatttcctaggcggatacacgctacttcagtgttcaattcttccat |
27747167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 27727486 - 27727567
Alignment:
| Q |
262 |
gggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgttcaattcctccat |
343 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||| |
|
|
| T |
27727486 |
gggcaatggtgggacaggtaacaggaataacatggacatttcctaggcggatacacgctatttcggtgttcatttcttccat |
27727567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 27714249 - 27714318
Alignment:
| Q |
262 |
gggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgtt |
331 |
Q |
| |
|
||||||| | |||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
27714249 |
gggcaattgtgggataagtaacggggataacatggacatttcctaggcggatacatgctatttctgtgtt |
27714318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University