View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19624_high_5 (Length: 250)
Name: NF19624_high_5
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19624_high_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 2149980 - 2149743
Alignment:
| Q |
13 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
112 |
Q |
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| T |
2149980 |
aatatccaaagattcaacttgcagagaatggacaattgccaaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
2149881 |
T |
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| Q |
113 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
212 |
Q |
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| T |
2149880 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgag |
2149781 |
T |
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| Q |
213 |
tgatgcatgtgctttggttaacctctttgtgcatcttt |
250 |
Q |
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| T |
2149780 |
tgatgcatgtgctttggttaacctctttgtgcatcttt |
2149743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 2140971 - 2140735
Alignment:
| Q |
13 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
112 |
Q |
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| T |
2140971 |
aatatccaaagattcaactagcagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
2140872 |
T |
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| Q |
113 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
212 |
Q |
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| T |
2140871 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgag |
2140772 |
T |
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| Q |
213 |
tgatgcatgtgctttggttaacctctttgtgcatcttt |
250 |
Q |
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| T |
2140771 |
tgatgcacgtgctttggtt-atctctttgtgcctcttt |
2140735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 2145505 - 2145271
Alignment:
| Q |
13 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
112 |
Q |
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| T |
2145505 |
aatatccaaagattcaactagtagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttggtgagtacaaacccatggagacatt |
2145406 |
T |
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| Q |
113 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
212 |
Q |
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| T |
2145405 |
aaggagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgag |
2145306 |
T |
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| Q |
213 |
tgatgcatgtgctttggttaacctctttgtgcatct |
248 |
Q |
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| T |
2145305 |
tgatgcatgtgctttggtt-atctctttgtgcatct |
2145271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 42003993 - 42004054
Alignment:
| Q |
151 |
attgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
212 |
Q |
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| T |
42003993 |
attgtatagatggatggctcaagacaaatgctacctgccctttgtgtcgaaattttccagag |
42004054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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