View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19624_high_7 (Length: 250)

Name: NF19624_high_7
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19624_high_7
NF19624_high_7
[»] chr7 (43 HSPs)
chr7 (13-250)||(38643519-38643754)
chr7 (45-186)||(4226123-4226265)
chr7 (45-162)||(4227156-4227274)
chr7 (46-186)||(12643099-12643240)
chr7 (48-186)||(12644093-12644232)
chr7 (46-188)||(45915766-45915909)
chr7 (43-144)||(7158227-7158329)
chr7 (46-162)||(47558029-47558146)
chr7 (47-173)||(38644633-38644760)
chr7 (45-186)||(45914524-45914664)
chr7 (45-144)||(12930770-12930870)
chr7 (46-130)||(37284108-37284193)
chr7 (46-130)||(37289326-37289411)
chr7 (45-144)||(12929285-12929385)
chr7 (52-162)||(22661362-22661473)
chr7 (46-162)||(27480731-27480848)
chr7 (47-186)||(27479987-27480127)
chr7 (46-142)||(37563642-37563739)
chr7 (137-190)||(40379860-40379913)
chr7 (45-144)||(43937892-43937992)
chr7 (45-123)||(31695637-31695716)
chr7 (47-140)||(40021491-40021585)
chr7 (137-186)||(27396883-27396932)
chr7 (137-190)||(28469292-28469345)
chr7 (137-190)||(32053427-32053480)
chr7 (137-190)||(42731510-42731563)
chr7 (137-184)||(7354953-7355000)
chr7 (46-144)||(26825629-26825728)
chr7 (137-183)||(17102111-17102157)
chr7 (137-183)||(19204580-19204626)
chr7 (137-183)||(27991830-27991876)
chr7 (137-183)||(30948420-30948466)
chr7 (137-183)||(32680855-32680901)
chr7 (43-144)||(43938180-43938282)
chr7 (45-141)||(5280270-5280367)
chr7 (137-190)||(10935885-10935938)
chr7 (76-144)||(26830027-26830096)
chr7 (46-158)||(40022517-40022629)
chr7 (137-190)||(45010689-45010742)
chr7 (76-144)||(19979980-19980048)
chr7 (45-144)||(37563352-37563452)
chr7 (137-185)||(45010893-45010941)
chr7 (104-164)||(47559046-47559106)
[»] scaffold0347 (2 HSPs)
scaffold0347 (47-232)||(13609-13795)
scaffold0347 (49-188)||(14551-14691)
[»] chr1 (59 HSPs)
chr1 (43-232)||(25064929-25065119)
chr1 (50-188)||(25065916-25066055)
chr1 (46-186)||(13295134-13295275)
chr1 (52-162)||(46282777-46282888)
chr1 (52-133)||(32619389-32619471)
chr1 (45-162)||(49093039-49093157)
chr1 (47-162)||(46282071-46282187)
chr1 (52-162)||(50062932-50063043)
chr1 (46-111)||(13295615-13295681)
chr1 (52-133)||(32622369-32622451)
chr1 (46-144)||(2828192-2828291)
chr1 (187-246)||(27998136-27998195)
chr1 (47-130)||(51935215-51935299)
chr1 (46-158)||(6345625-6345738)
chr1 (120-186)||(16970823-16970889)
chr1 (52-140)||(6344260-6344349)
chr1 (46-134)||(32238698-32238787)
chr1 (46-144)||(1047490-1047589)
chr1 (48-144)||(2829541-2829645)
chr1 (137-190)||(6367653-6367706)
chr1 (137-190)||(40210654-40210707)
chr1 (46-144)||(12577009-12577108)
chr1 (45-143)||(52563649-52563748)
chr1 (43-140)||(28534803-28534900)
chr1 (136-190)||(37578476-37578530)
chr1 (85-162)||(49093797-49093875)
chr1 (137-190)||(4960631-4960684)
chr1 (137-190)||(13914351-13914404)
chr1 (137-190)||(17662134-17662187)
chr1 (137-190)||(24009825-24009878)
chr1 (137-190)||(42248564-42248617)
chr1 (45-144)||(25414842-25414942)
chr1 (132-188)||(34850351-34850407)
chr1 (136-183)||(31514577-31514624)
chr1 (132-187)||(34849097-34849152)
chr1 (50-144)||(49002879-49002974)
chr1 (137-183)||(183482-183528)
chr1 (47-144)||(2953750-2953848)
chr1 (132-182)||(10304009-10304059)
chr1 (132-190)||(21444680-21444738)
chr1 (132-190)||(22103790-22103848)
chr1 (137-183)||(24905427-24905473)
chr1 (137-183)||(25647975-25648021)
chr1 (137-183)||(28011454-28011500)
chr1 (137-183)||(33442854-33442900)
chr1 (132-190)||(42267389-42267447)
chr1 (137-190)||(1103552-1103605)
chr1 (137-190)||(1841550-1841603)
chr1 (137-190)||(14879062-14879115)
chr1 (46-126)||(24701573-24701654)
chr1 (137-190)||(30711418-30711471)
chr1 (137-190)||(32917351-32917404)
chr1 (137-190)||(34464733-34464786)
chr1 (48-144)||(37152824-37152921)
chr1 (137-190)||(43758913-43758966)
chr1 (137-190)||(46163121-46163174)
chr1 (45-144)||(19755691-19755791)
chr1 (49-89)||(36380186-36380226)
chr1 (137-173)||(40772598-40772634)
[»] chr3 (38 HSPs)
chr3 (45-186)||(32717065-32717207)
chr3 (46-199)||(29192034-29192188)
chr3 (46-162)||(29192977-29193094)
chr3 (45-186)||(2943911-2944053)
chr3 (46-162)||(48189083-48189200)
chr3 (46-133)||(1757317-1757405)
chr3 (47-162)||(45279268-45279384)
chr3 (45-162)||(2944650-2944768)
chr3 (52-133)||(44481966-44482048)
chr3 (45-133)||(22736703-22736792)
chr3 (47-162)||(11026616-11026732)
chr3 (47-162)||(1756550-1756666)
chr3 (52-166)||(37249204-37249319)
chr3 (52-162)||(45278549-45278660)
chr3 (52-162)||(48188383-48188494)
chr3 (61-162)||(43105818-43105920)
chr3 (47-133)||(43105233-43105320)
chr3 (52-133)||(44476054-44476136)
chr3 (45-144)||(22129004-22129104)
chr3 (52-162)||(37249782-37249892)
chr3 (137-190)||(33689663-33689716)
chr3 (69-162)||(11025959-11026053)
chr3 (137-187)||(51994173-51994223)
chr3 (137-190)||(23458263-23458316)
chr3 (137-190)||(26463882-26463935)
chr3 (82-162)||(32716284-32716365)
chr3 (137-190)||(33156278-33156331)
chr3 (137-190)||(40758235-40758288)
chr3 (137-183)||(2796270-2796316)
chr3 (137-183)||(8041707-8041753)
chr3 (137-183)||(10770751-10770797)
chr3 (137-183)||(36314558-36314604)
chr3 (137-183)||(48322637-48322683)
chr3 (137-183)||(54466514-54466560)
chr3 (137-190)||(9294242-9294295)
chr3 (45-144)||(1741385-1741485)
chr3 (61-144)||(55036683-55036767)
chr3 (45-144)||(55036955-55037055)
[»] chr5 (57 HSPs)
chr5 (45-186)||(22870422-22870564)
chr5 (45-186)||(20856930-20857072)
chr5 (54-186)||(22869612-22869745)
chr5 (45-162)||(20857531-20857649)
chr5 (52-166)||(36477356-36477471)
chr5 (45-162)||(20072853-20072971)
chr5 (46-162)||(39181056-39181173)
chr5 (47-186)||(20072121-20072261)
chr5 (46-144)||(14744732-14744831)
chr5 (45-130)||(8654105-8654191)
chr5 (47-199)||(16533572-16533725)
chr5 (45-141)||(21978976-21979073)
chr5 (46-130)||(31107930-31108015)
chr5 (52-199)||(16532898-16533046)
chr5 (52-133)||(21978030-21978112)
chr5 (52-133)||(21972095-21972176)
chr5 (52-167)||(36476770-36476886)
chr5 (47-162)||(39181780-39181896)
chr5 (45-144)||(31108340-31108439)
chr5 (137-190)||(32242333-32242386)
chr5 (46-127)||(8673777-8673859)
chr5 (137-190)||(5993980-5994033)
chr5 (48-144)||(25253087-25253184)
chr5 (48-144)||(25316877-25316974)
chr5 (137-190)||(35512239-35512292)
chr5 (137-181)||(6150545-6150589)
chr5 (45-144)||(7015506-7015606)
chr5 (45-144)||(14745446-14745546)
chr5 (45-144)||(32052222-32052322)
chr5 (45-144)||(33735311-33735411)
chr5 (45-144)||(37944992-37945092)
chr5 (46-144)||(32052510-32052609)
chr5 (137-183)||(297274-297320)
chr5 (137-183)||(3529133-3529179)
chr5 (137-183)||(6758125-6758171)
chr5 (61-126)||(8323070-8323136)
chr5 (137-183)||(11761840-11761886)
chr5 (132-190)||(12904840-12904898)
chr5 (137-187)||(24547412-24547462)
chr5 (137-183)||(41930607-41930653)
chr5 (137-190)||(5024302-5024355)
chr5 (137-190)||(11047528-11047581)
chr5 (137-190)||(13962955-13963008)
chr5 (137-190)||(14194707-14194760)
chr5 (137-190)||(19892592-19892645)
chr5 (137-190)||(20840624-20840677)
chr5 (137-190)||(29646646-29646699)
chr5 (137-182)||(38442159-38442204)
chr5 (137-182)||(38475291-38475336)
chr5 (137-190)||(39453391-39453444)
chr5 (137-173)||(8322495-8322531)
chr5 (137-181)||(18670290-18670334)
chr5 (137-173)||(28269689-28269725)
chr5 (137-173)||(28771139-28771175)
chr5 (137-173)||(31482672-31482708)
chr5 (137-173)||(35920485-35920521)
chr5 (104-144)||(39402150-39402190)
[»] chr2 (37 HSPs)
chr2 (47-186)||(25623288-25623428)
chr2 (47-162)||(25624417-25624533)
chr2 (46-186)||(29957816-29957957)
chr2 (45-144)||(24387349-24387449)
chr2 (45-144)||(24388258-24388358)
chr2 (45-130)||(20101768-20101854)
chr2 (46-133)||(20982523-20982611)
chr2 (47-162)||(20983245-20983361)
chr2 (46-127)||(20103163-20103245)
chr2 (47-186)||(29958507-29958647)
chr2 (137-190)||(2318249-2318302)
chr2 (54-144)||(19620795-19620886)
chr2 (137-190)||(15848179-15848232)
chr2 (137-190)||(37895631-37895684)
chr2 (46-144)||(16366962-16367061)
chr2 (118-184)||(6846856-6846922)
chr2 (47-144)||(10446832-10446930)
chr2 (109-186)||(6848022-6848099)
chr2 (137-190)||(36382252-36382305)
chr2 (137-190)||(39423606-39423659)
chr2 (137-190)||(44714045-44714098)
chr2 (52-143)||(33881580-33881672)
chr2 (52-126)||(33882892-33882967)
chr2 (45-115)||(43236502-43236573)
chr2 (137-183)||(6657969-6658015)
chr2 (132-190)||(11689627-11689685)
chr2 (137-183)||(14900743-14900789)
chr2 (137-183)||(16099146-16099192)
chr2 (137-183)||(33739794-33739840)
chr2 (137-183)||(39498401-39498447)
chr2 (137-190)||(10712814-10712867)
chr2 (109-190)||(10840539-10840620)
chr2 (137-190)||(25892485-25892538)
chr2 (137-190)||(36479809-36479862)
chr2 (137-190)||(36755184-36755237)
chr2 (137-173)||(11163324-11163360)
chr2 (61-144)||(16367249-16367333)
[»] chr4 (52 HSPs)
chr4 (46-186)||(23455649-23455790)
chr4 (46-162)||(23454953-23455070)
chr4 (46-162)||(56556581-56556698)
chr4 (47-133)||(38813554-38813641)
chr4 (46-133)||(55013102-55013189)
chr4 (48-162)||(56557309-56557424)
chr4 (46-162)||(52816407-52816524)
chr4 (45-144)||(53477082-53477182)
chr4 (52-166)||(38982576-38982691)
chr4 (46-162)||(38814311-38814428)
chr4 (46-133)||(52815662-52815750)
chr4 (50-144)||(54590146-54590241)
chr4 (47-137)||(54591587-54591678)
chr4 (45-121)||(13336863-13336940)
chr4 (137-190)||(14801827-14801880)
chr4 (137-190)||(34765664-34765717)
chr4 (45-144)||(47862438-47862537)
chr4 (47-98)||(22881167-22881218)
chr4 (47-98)||(22932831-22932882)
chr4 (46-115)||(9254405-9254475)
chr4 (136-190)||(16605692-16605746)
chr4 (136-190)||(24349764-24349818)
chr4 (127-189)||(52298107-52298169)
chr4 (137-190)||(35028282-35028335)
chr4 (122-187)||(41583518-41583583)
chr4 (137-190)||(53701903-53701956)
chr4 (45-144)||(22250019-22250119)
chr4 (122-190)||(41582523-41582591)
chr4 (136-183)||(4982986-4983033)
chr4 (46-144)||(53559673-53559772)
chr4 (137-183)||(9145026-9145072)
chr4 (137-183)||(13058128-13058174)
chr4 (140-190)||(17356206-17356256)
chr4 (137-183)||(23613400-23613446)
chr4 (137-183)||(27934623-27934669)
chr4 (137-183)||(36009104-36009150)
chr4 (137-183)||(42738291-42738337)
chr4 (137-183)||(43155787-43155833)
chr4 (137-183)||(49879467-49879513)
chr4 (137-190)||(15507957-15508010)
chr4 (137-190)||(37976437-37976490)
chr4 (122-187)||(40387543-40387608)
chr4 (137-182)||(44967330-44967375)
chr4 (137-190)||(52909344-52909397)
chr4 (45-144)||(20086435-20086535)
chr4 (46-98)||(22882376-22882428)
chr4 (46-98)||(22934040-22934092)
chr4 (137-173)||(24711202-24711238)
chr4 (45-144)||(33294429-33294529)
chr4 (132-188)||(48529862-48529918)
chr4 (137-173)||(50418938-50418974)
chr4 (150-190)||(53129790-53129830)
[»] chr8 (40 HSPs)
chr8 (48-144)||(1231527-1231624)
chr8 (46-186)||(34213763-34213904)
chr8 (45-162)||(34665768-34665886)
chr8 (45-144)||(1232801-1232899)
chr8 (46-130)||(33497632-33497717)
chr8 (46-144)||(38598963-38599062)
chr8 (46-162)||(34214512-34214630)
chr8 (45-144)||(25288078-25288178)
chr8 (47-144)||(7393147-7393245)
chr8 (52-127)||(34666559-34666635)
chr8 (47-140)||(4970125-4970219)
chr8 (51-127)||(33497020-33497097)
chr8 (46-115)||(4463457-4463527)
chr8 (137-190)||(16388810-16388863)
chr8 (137-190)||(36928567-36928620)
chr8 (41-144)||(7679-7783)
chr8 (138-190)||(31608797-31608849)
chr8 (46-144)||(25287791-25287890)
chr8 (45-123)||(29574740-29574819)
chr8 (137-190)||(13186151-13186204)
chr8 (54-130)||(24379012-24379089)
chr8 (137-190)||(35756673-35756726)
chr8 (137-190)||(39071767-39071820)
chr8 (45-89)||(4462137-4462181)
chr8 (47-95)||(27437571-27437619)
chr8 (45-144)||(43866709-43866809)
chr8 (46-144)||(36623639-36623738)
chr8 (137-183)||(1425313-1425359)
chr8 (137-183)||(3041716-3041762)
chr8 (137-183)||(23663805-23663851)
chr8 (137-183)||(36325325-36325371)
chr8 (137-183)||(38845559-38845605)
chr8 (137-183)||(40775910-40775956)
chr8 (47-144)||(43866997-43867095)
chr8 (137-183)||(44407117-44407163)
chr8 (137-190)||(4405944-4405997)
chr8 (137-182)||(38862709-38862754)
chr8 (137-173)||(23698545-23698581)
chr8 (47-95)||(27436563-27436611)
chr8 (49-144)||(41801818-41801914)
[»] chr6 (25 HSPs)
chr6 (46-162)||(4116798-4116915)
chr6 (46-162)||(4117531-4117648)
chr6 (47-162)||(33399966-33400082)
chr6 (45-144)||(33401128-33401228)
chr6 (46-144)||(17784387-17784486)
chr6 (46-162)||(14656479-14656596)
chr6 (46-162)||(14657193-14657310)
chr6 (50-162)||(1661414-1661527)
chr6 (53-130)||(8427381-8427459)
chr6 (45-144)||(13480206-13480306)
chr6 (137-190)||(12080727-12080780)
chr6 (137-190)||(21627997-21628050)
chr6 (48-144)||(23291745-23291842)
chr6 (137-190)||(33517625-33517678)
chr6 (45-144)||(5064333-5064433)
chr6 (50-144)||(5064621-5064716)
chr6 (132-190)||(1215150-1215208)
chr6 (137-183)||(28000645-28000691)
chr6 (137-183)||(30337540-30337586)
chr6 (137-190)||(3059348-3059401)
chr6 (137-190)||(30725850-30725903)
chr6 (137-190)||(30803952-30804005)
chr6 (137-190)||(33647054-33647107)
chr6 (45-144)||(13480494-13480594)
chr6 (45-144)||(30234878-30234978)
[»] scaffold0009 (2 HSPs)
scaffold0009 (45-144)||(260999-261099)
scaffold0009 (46-144)||(262443-262542)
[»] scaffold0018 (1 HSPs)
scaffold0018 (47-133)||(73109-73196)
[»] scaffold0182 (2 HSPs)
scaffold0182 (45-130)||(14393-14479)
scaffold0182 (46-130)||(13133-13218)
[»] scaffold1493 (2 HSPs)
scaffold1493 (45-144)||(591-691)
scaffold1493 (46-144)||(879-978)
[»] scaffold0031 (1 HSPs)
scaffold0031 (137-190)||(69056-69109)
[»] scaffold0005 (1 HSPs)
scaffold0005 (137-190)||(37847-37900)
[»] scaffold0020 (1 HSPs)
scaffold0020 (136-183)||(139762-139809)
[»] scaffold0559 (1 HSPs)
scaffold0559 (137-183)||(1324-1370)
[»] scaffold0024 (1 HSPs)
scaffold0024 (137-183)||(141854-141900)
[»] scaffold0007 (1 HSPs)
scaffold0007 (137-183)||(1860-1906)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 38643519 - 38643754
Alignment:
Q  13 aatatacttatcgaacttttaaaagaagatagtaggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatcat-gagcttactaa 111  Q
    |||||||| ||||| ||||||| |||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||    
T  38643519 aatatactcatcgatcttttaagagaagatag---gcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccttgaccttactaa 38643615  T
Q  112 tccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaagtcagcaaattaggggttgta 211  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||     
T  38643616 tcctcccattttgctcctgtaaaaattaatcatttaagatttcgtccctctccccacttaattactgtcacgtcactaattcagcaaattaggggttgtg 38643715  T
Q  212 ttgacaaaaatacccttggcttgttcagaccaatgcaca 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38643716 ttgacaaaaatacccttggcttgttcagaccaatgcaca 38643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 4226123 - 4226265
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  4226123 taggcttaaatatgcatttcatccctgtaattataggccatttgattcttcaaccatgagcttactaatccttccattttgcccctgtaaaaattaatca 4226222  T
Q  144 tctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | ||| ||||||||| ||| |||  ||||| | ||||||||||    
T  4226223 tttaaaatttcgtccttcttcccggttaatcactgccacgtca 4226265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 4227274 - 4227156
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||| ||    
T  4227274 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccttgagcttactaatcctcccattttgtccctgtaaaaattaacca 4227175  T
Q  144 tctaagatttcgtccctct 162  Q
    | ||| |||||||||||||    
T  4227174 tttaaaatttcgtccctct 4227156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 12643099 - 12643240
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||| |||||| ||||||||| |||    
T  12643099 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatctctgagcttactaatcctcccattttacccctgcaaaaattaaccat 12643198  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
     ||| ||||||||||||| |||  ||||| | ||||||||||    
T  12643199 ttaaaatttcgtccctcttcccgattaatcactgccacgtca 12643240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 12644232 - 12644093
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatct 146  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||| ||||||| | |||||||||||||||||| |    
T  12644232 gcttaaatatgcatttcatccctataattacaggccatttgatttttcatccctgagcttactaatcctcccattttactcctgtaaaaattaatcattt 12644133  T
Q  147 aagatttcgtccctctccccacttaattattgccacgtca 186  Q
    || ||||||||||||| |||  ||||| | ||||||||||    
T  12644132 aaaatttcgtccctcttcccggttaatcactgccacgtca 12644093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 45915909 - 45915766
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| | ||||| ||||||||||||||||||||    
T  45915909 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccctaagcttactaatcctcctattttacccctgtaaaaattaatcat 45915810  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtcact 188  Q
     ||| ||| |||||||||  ||  ||||| | ||||||||||||    
T  45915809 ttaaaattccgtccctctttccgattaatcactgccacgtcact 45915766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 7158227 - 7158329
Alignment:
Q  43 agtaggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaat 141  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  7158227 agtaggcttaaatatgcatttcatccctacaattataggccatttgatttttcatccatgaacttactaatccttccattttgcccctgtaaatattaat 7158326  T
Q  142 cat 144  Q
    |||    
T  7158327 cat 7158329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 47558029 - 47558146
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||    
T  47558029 aggcttaaatatgcatttcatctctttaattataggctatttgatttttcatccctgagtttactaatcctcccattttgcccctgtaaaaattaaccat 47558128  T
Q  145 ctaagatttcgtccctct 162  Q
     ||| |||||||||||||    
T  47558129 ttaaaatttcgtccctct 47558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 38644760 - 38644633
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    |||||||||||||||||||| | || ||||||||| |||||||||||| |||  | |||||| |||||||||||||||| || ||||||||||||||||     
T  38644760 ggcttaaatatgcatttcattcttgcaattataggtcatttgattttttatccctaagcttattaatccttccattttgaccttgtaaaaattaatcatt 38644661  T
Q  146 taagatttcgtccctctccccacttaat 173  Q
    ||||||||| ||||||||||||||||||    
T  38644660 taagatttcatccctctccccacttaat 38644633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 45914524 - 45914664
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||  ||||||| ||||||||||||||||||    
T  45914524 taggcttaaatatgcatttcatctctgtaattataggccatttgatttttcatccctaagcttactaat-ctctcattttg-ccctgtaaaaattaatca 45914621  T
Q  144 tctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | ||| ||||||||||||| |||  ||||| | ||||||||||    
T  45914622 tttaaaatttcgtccctcttcccgattaatcactgccacgtca 45914664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 12930770 - 12930870
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||| ||| ||||||||    
T  12930770 taggcttaaatatgcatttcatccctgcaattataggtcatttgatttttcatccctgaacttactaatccttccattttgcccctgcaaatattaatca 12930869  T
Q  144 t 144  Q
    |    
T  12930870 t 12930870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 37284108 - 37284193
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  37284108 aggcttaaatatgcttttcatccctgtaattataggccatttgatttttcatccctgagcttactaatcctcccattttgcccctg 37284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 37289411 - 37289326
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||    
T  37289411 aggcttaaatatgcttttcatccctgtaattataggccatttggtttttcatccctgagcttactaatcctcccattttgcccctg 37289326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 12929285 - 12929385
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||||||| | ||| |||||||||||| |||||||||||||| ||| ||||||||    
T  12929285 taggcttaaatatgcatttcatccctgcaaatataggctatttgatttttcatccctgaacttactaatcctcccattttgcccctgcaaatattaatca 12929384  T
Q  144 t 144  Q
    |    
T  12929385 t 12929385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 22661362 - 22661473
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||||||| | | |    
T  22661362 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccttgaacttactaatccttccattttgcccctgtaattactaatcatttgaaa 22661461  T
Q  151 tttcgtccctct 162  Q
     |||||||||||    
T  22661462 gttcgtccctct 22661473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 27480848 - 27480731
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||| | |||  |||||||||||||||||||||||||||||  | |||||||    
T  27480848 aggcttaaatatgtttttcatccctgtaattataggccgtttgatttttcatccttgattttactaatccttccattttgcccctgtaattactaatcat 27480749  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  27480748 ttgaaagttcgtccctct 27480731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 27479987 - 27480127
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| ||||||||||| |||||||||||  |||||||||||| | |||||||||||||||| | |||||||||||||||  | |||||||     
T  27479987 ggcttaaatatgcttttcatccctgcaattataggccgcttgatttttcatccctgagcttactaatcctcctattttgcccctgtaattactaatcatt 27480086  T
Q  146 taagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | | | ||||||||||| ||||  |||| | ||||||||||    
T  27480087 tgaaagttcgtccctcttcccagataatcactgccacgtca 27480127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 37563739 - 37563642
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatc 142  Q
    |||||||||||||  |||| ||||||||| |||||||||||||| ||||| | | |||  ||||||||||||||| |||||||||| ||| |||||||    
T  37563739 aggcttaaatatgtctttcgtccctgtaaatataggccatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatc 37563642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 40379860 - 40379913
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  40379860 ttaatcatttaaaatttcgtccctctccccacttaatcaatgccacgtcactaa 40379913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 43937892 - 43937992
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| ||| ||||| |||||| ||||||| ||||||| | |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  43937892 taggcttaaatatgtctttcgtccttgtaaatataggtcatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatca 43937991  T
Q  144 t 144  Q
    |    
T  43937992 t 43937992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 31695716 - 31695637
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccatttt 123  Q
    |||||| |||||||||||||||||||| || |||||| |||||||  |||||| | | | ||||||||||||||||||||    
T  31695716 taggctaaaatatgcatttcatccctgcaaatataggtcatttgaaatttcatccctaaacttactaatccttccatttt 31695637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 40021491 - 40021585
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaa 140  Q
    |||| ||||||||||||||||||||||| |||||| |||||||  |||||| ||| | ||| ||||| |||| |||||||| ||| ||| |||||    
T  40021491 ggctaaaatatgcatttcatccctgtaaatataggtcatttgaaatttcatccataaacttgctaattcttctattttgccactgcaaatattaa 40021585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 27396932 - 27396883
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||    
T  27396932 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtca 27396883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 28469345 - 28469292
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | | ||||||||||||    
T  28469345 ttaatcatttaaaatttcgtccctctccccacttaatcactaccacgtcactaa 28469292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 32053480 - 32053427
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || |||||||||||    
T  32053480 ttaatcatttaaaatttcgtccctctccccacttaatcactgtcacgtcactaa 32053427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 42731510 - 42731563
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||    
T  42731510 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaa 42731563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 7354953 - 7355000
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgt 184  Q
    |||||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  7354953 ttaatcatttaaaatttggtccctccccccacttaattattgccacgt 7355000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 26825629 - 26825728
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| ||||||||| |||||| ||||||| ||||| | | |||  ||||||||| ||||| | |||||||| ||| |||||||||    
T  26825629 aggcttaaatatgtctttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatcattccaatctgcccctgcaaagattaatcat 26825728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 17102111 - 17102157
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  17102111 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 17102157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 19204580 - 19204626
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||| ||||||||||||||||||| |||||||||    
T  19204580 ttaatcatttaaaattttgtccctctccccacttaatcattgccacg 19204626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 27991830 - 27991876
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  27991830 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 27991876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 30948466 - 30948420
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  30948466 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 30948420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 32680901 - 32680855
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  32680901 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 32680855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 43938282 - 43938180
Alignment:
Q  43 agtaggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaat 141  Q
    ||||||||||||||||  |||| ||| || || |||| ||||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| ||||||    
T  43938282 agtaggcttaaatatgtctttcgtccttgcaaatataagccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaat 43938183  T
Q  142 cat 144  Q
    |||    
T  43938182 cat 43938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 5280270 - 5280367
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaat 141  Q
    |||||||||||| |  |||| |||||| || |||||||||||||| ||||| | | |||  ||||||||||||||| | |||| ||||||| ||||||    
T  5280270 taggcttaaataagtctttcgtccctgcaaatataggccatttgaattttcgttactgaagttactaatccttccaatctgccactgtaaatattaat 5280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 10935885 - 10935938
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||| ||||||||| | ||||| ||||||||    
T  10935885 ttaatcatttaaaatttcgtccctctctccacttaatcactgccatgtcactaa 10935938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 26830096 - 26830027
Alignment:
Q  76 tataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||| ||| | ||||||| |||||  |||||||||||||||||||||| ||| ||| |||||||||    
T  26830096 tataggccgttttaattttcattcatgaagttactaatccttccattttgccactgcaaatattaatcat 26830027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 40022629 - 40022517
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||| ||||||| |||||||||||| || ||||| | ||||||  |||||||  ||| ||||||||||||||||||||| | ||| ||| ||||| |||    
T  40022629 aggctaaaatatgtatttcatccctgcaaatatagtc-atttgaaatttcatccctgatcttactaatccttccattttgtcactgcaaatattaagcat 40022531  T
Q  145 ctaagatttcgtcc 158  Q
     | ||| |||||||    
T  40022530 ttgagaattcgtcc 40022517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 45010689 - 45010742
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||| |||||||||||||| | ||||| ||||||||    
T  45010689 ttaatcatttaaaatttcgtccatctccccacttaatcactgccaagtcactaa 45010742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 19979980 - 19980048
Alignment:
Q  76 tataggccatttgatttttcatcatgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||| ||||||| |||||||| |||  ||||||||| ||||||||||||  || ||| |||||||||    
T  19979980 tataggtcatttgaattttcatcctgaagttactaatcattccattttgccgttgcaaatattaatcat 19980048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 37563352 - 37563452
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||  |||||| || |||||||||||||| ||||| | | |||  ||||||||||||| | | |||||||| ||| ||||||||    
T  37563352 taggcttaaatatgtcttttgtccctgcaaatataggccatttgaattttcgtccctgaatttactaatccttctaatctgcccctgcaaatattaatca 37563451  T
Q  144 t 144  Q
    |    
T  37563452 t 37563452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 45010941 - 45010893
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtc 185  Q
    |||||||| ||| |||||||| ||||||||||||||| | |||||||||    
T  45010941 ttaatcatttaaaatttcgtctctctccccacttaatcactgccacgtc 45010893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 47559106 - 47559046
Alignment:
Q  104 cttactaatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctctcc 164  Q
    |||||||||||| |||||||  ||||||||||||||| ||| ||| |||| || |||||||    
T  47559106 cttactaatcctcccattttctccctgtaaaaattaaccatttaaaattttgttcctctcc 47559046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 232
Target Start/End: Original strand, 13609 - 13795
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||     
T  13609 ggcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccctgagcttactaatccttccattttgcccctataaaaattaatcatt 13708  T
Q  146 taagatttcgtccctctccccacttaattattgccacgtcactaagtcagcaaattaggggttgtattgacaaaaatacccttggct 232  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13709 taagatttcgtccctctccccacttaatcactaccacgtcactaagtcagcaaattaggggttgtgttgacaaaaatacccttggct 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 14691 - 14551
Alignment:
Q  49 cttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatcta 147  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  14691 cttaaatatgcatttcattccttcaattataggccatttgatttttcatccctgagcttactaatcctcccattttgcccctataaaaattaatcattta 14592  T
Q  148 agatttcgtccctctccccacttaattattgccacgtcact 188  Q
    |||||||||||||||||||||||||| | |||||| |||||    
T  14591 agatttcgtccctctccccacttaatcactgccacatcact 14551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 59)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 25064929 - 25065119
Alignment:
Q  43 agtaggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaat 141  Q
    |||||| |||||||||||||||||||||| |||||||||  |||||||||||||||  ||| |||||||||||| ||||| || |||| |||||||||||    
T  25064929 agtaggattaaatatgcatttcatccctgcaattataggtaatttgatttttcatccctgatcttactaatcctcccattctgtccctataaaaattaat 25065028  T
Q  142 catctaagatttcgtccctctccccacttaattattgccacgtcactaagtcagcaaattaggggttgtattgacaaaaatacccttggct 232  Q
    ||| ||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  25065029 catttaagatttcgtccctctcctcacttgatcactgccacgtcactaagtcagcaaattagggggtgtgttgacaaaaatacccttggct 25065119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 25066055 - 25065916
Alignment:
Q  50 ttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatctaa 148  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||    
T  25066055 ttaaatatgcatttcatccctataattataagccatttgatttttcatccctgagcttactaatccttccattttacccctgtaaaaattaatcatttaa 25065956  T
Q  149 gatttcgtccctctccccacttaattattgccacgtcact 188  Q
    ||||||||||||||| ||||||||| | |||||| |||||    
T  25065955 gatttcgtccctctctccacttaatcactgccacctcact 25065916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 13295134 - 13295275
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||    
T  13295134 aggcttaaatatgcatttcacccctgtaattataggtcatttgatttttcacccctgagcttactaatccttccattttgcccttgtaaaaattaatcat 13295233  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
     ||| || |||||||||| |||  ||||| | ||||||||||    
T  13295234 ttaaaatgtcgtccctcttcccggttaatcactgccacgtca 13295275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 46282888 - 46282777
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||||||| | | |    
T  46282888 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatttgaaa 46282789  T
Q  151 tttcgtccctct 162  Q
     |||||||||||    
T  46282788 gttcgtccctct 46282777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 32619389 - 32619471
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  32619389 aaatatgcttttcatccctgtaattatgggccatttgatttttcatccctgagcttactaatcctcccattttgcccctgtaa 32619471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 49093039 - 49093157
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||||||| |||||  | ||||||    
T  49093039 taggcttaaacatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccatgtaattactaatca 49093138  T
Q  144 tctaagatttcgtccctct 162  Q
    | | | | |||||||||||    
T  49093139 tttgaaagttcgtccctct 49093157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 46282071 - 46282187
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||  ||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||     
T  46282071 ggcttaaatatgtttttcatccctgtaattataggtcgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatt 46282170  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  46282171 tgaaagttcgtccctct 46282187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 50063043 - 50062932
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| ||||||  | ||||||| | | |    
T  50063043 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcctctgtaattactaatcatttgaaa 50062944  T
Q  151 tttcgtccctct 162  Q
     |||||||||||    
T  50062943 gttcgtccctct 50062932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 13295681 - 13295615
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13295681 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatctctgagcttactaa 13295615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 32622451 - 32622369
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||  |||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  32622451 aaatatgtttttcatccctgtaattatgggccatttgatttttcatccctgagcttactaatcctcccattttgcccctgtaa 32622369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 2828192 - 2828291
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||||| ||| | |||||||||||||| |||||||| ||| ||| |||||||||    
T  2828192 aggcttaaatatgcatttcatccttgcaattatagatcatttgatttttcatccataaacttactaatccttctattttgcctctgcaaatattaatcat 2828291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 27998136 - 27998195
Alignment:
Q  187 ctaagtcagcaaattaggggttgtattgacaaaaatacccttggcttgttcagaccaatg 246  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  27998136 ctaagtcagcaaattaggggttgtgctgacaaaaatacccttggcttgttcagaccaatg 27998195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 51935299 - 51935215
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    ||||||||||||| |||||||| |||||||||| | ||||||||||||||| | ||||||| |||||||| ||||||||||||||    
T  51935299 ggcttaaatatgcttttcatccatgtaattatatgtcatttgatttttcatccctgagctttctaatcctcccattttgcccctg 51935215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 6345738 - 6345625
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||| |||||||||||||||||||| |||||  || |||||||  |||||||  ||| ||||||||||||||||||||||||||| ||| ||||| |||    
T  6345738 aggctaaaatatgcatttcatccctgcaattaggggtcatttgaaatttcatccctgaacttactaatccttccattttgcccctgcaaatattaagcat 6345639  T
Q  145 ctaagatttcgtcc 158  Q
     ||| |||| ||||    
T  6345638 ttaaaatttagtcc 6345625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 16970889 - 16970823
Alignment:
Q  120 ttttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    ||||||| |||||||| |||||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  16970889 ttttgccactgtaaaatttaatcatttaaaatttcgtccctctccccacttaatcattgccatgtca 16970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 6344260 - 6344349
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaa 140  Q
    ||||||||||||||||||||||||||  || |||||||  |||||| ||||| |||||||||||| ||||||||||| || ||| |||||    
T  6344260 aaatatgcatttcatccctgtaattaggggtcatttgaaatttcatccatgaacttactaatcctcccattttgcccttgcaaatattaa 6344349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 32238698 - 32238787
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaa 134  Q
    ||||| |||||||||||||||||||| || ||||||| ||||||  |||||| | ||| |||||||||||| |||||||||| |||||||    
T  32238698 aggctaaaatatgcatttcatccctgcaaatataggctatttgaaatttcatccctgaacttactaatcctcccattttgcctctgtaaa 32238787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 1047589 - 1047490
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||||||||||||| |||||| ||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  1047589 aggcttaaatatgtctttcatccctgtaaatataggtcatttgaattttcgtctctgaagttactaatccttccaatctgcccctgcaaatattaatcat 1047490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 2829645 - 2829541
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgat-------ttttcatcat-gagcttactaatccttccattttgcccctgtaaaaatta 139  Q
    |||||||||||||||||||||||  ||||||||| ||||||||       |||||||| | ||||||||||||||| ||||||| |||||| ||| ||||    
T  2829645 gcttaaatatgcatttcatccctacaattataggtcatttgatatttgatttttcatccttgagcttactaatcctcccattttacccctgcaaatatta 2829546  T
Q  140 atcat 144  Q
    |||||    
T  2829545 atcat 2829541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 6367653 - 6367706
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  6367653 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 6367706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 40210707 - 40210654
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  40210707 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 40210654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 12577009 - 12577108
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| ||||||||| |||||||||||||| ||||| || ||||  ||||||||| || || | |||||||| ||| |||||||||    
T  12577009 aggcttaaatatgtctttcgtccctgtaaatataggccatttgaattttcgtctatgaagttactaatcatttcaatctgcccctgcaaatattaatcat 12577108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 52563649 - 52563748
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||| |||||||||||||||||||| || ||||||  |||||   |||||| | |||| ||||||||||| |||||||||| ||| ||| ||||||||    
T  52563649 taggctaaaatatgcatttcatccctgcaaatatagggtatttggaatttcatccttgaggttactaatcctcccattttgccactgcaaatattaatca 52563748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 28534900 - 28534803
Alignment:
Q  43 agtaggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaa 140  Q
    |||||||||||||||||||||| |  |||||| |||||| |||||||  |||||| | ||| |||||||||||||||||||| || ||| ||| |||||    
T  28534900 agtaggcttaaatatgcatttcgt-tctgtaaatatagggcatttgaaatttcatccctgaacttactaatccttccattttacctctgcaaatattaa 28534803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 37578530 - 37578476
Alignment:
Q  136 attaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||||||| ||| |||||||| ||||||||||||||| | ||||||||||||||    
T  37578530 attaatcatttaaaatttcgtcactctccccacttaatcactgccacgtcactaa 37578476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 49093875 - 49093797
Alignment:
Q  85 tttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctct 162  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||  | ||||||| | | | |||||||||||    
T  49093875 tttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatttgaaagttcgtccctct 49093797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 4960631 - 4960684
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||||||| |||||||||| | ||||||||||||||    
T  4960631 ttaatcatttaaaatttcgtccctcttcccacttaatcactgccacgtcactaa 4960684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 13914404 - 13914351
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||| ||| | ||||||||||||||    
T  13914404 ttaatcatttaaaatttcgtccctctccccactaaatcactgccacgtcactaa 13914351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 17662187 - 17662134
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||||||| |||||||||| | ||||||||||||||    
T  17662187 ttaatcatttaaaatttcgtccctcttcccacttaatcactgccacgtcactaa 17662134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 24009878 - 24009825
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||| |||||||    
T  24009878 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacatcactaa 24009825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 42248564 - 42248617
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||| |||||    
T  42248564 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtgactaa 42248617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 25414842 - 25414942
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||  || |||||||||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  25414842 taggcttaaatatgtctttcgtccctacaaatataggccatttgaattttcttctctgaagttactaatccttccaatctgcccctgcaaatattaatca 25414941  T
Q  144 t 144  Q
    |    
T  25414942 t 25414942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 34850407 - 34850351
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcact 188  Q
    |||| |||||||| ||| ||||| |||||||||||||||||| | ||||||||||||    
T  34850407 aaaatttaatcatttaaaatttcatccctctccccacttaatcactgccacgtcact 34850351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 31514624 - 31514577
Alignment:
Q  136 attaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    ||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  31514624 attaatcatttaaaatttcgtccctctccccacttaatcactgccacg 31514577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 34849097 - 34849152
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcac 187  Q
    |||| |||||||| ||| ||||||||||||||||| |||||| | |||||||||||    
T  34849097 aaaatttaatcatttaaaatttcgtccctctcccctcttaatcactgccacgtcac 34849152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 49002879 - 49002974
Alignment:
Q  50 ttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||  |||| |||||| || |||||| ||||||| ||||| || ||||  ||||||||||||||| | |||||||| ||| |||||||||    
T  49002879 ttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccatgaagttactaatccttccaatctgcccctgcaaatattaatcat 49002974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 183528 - 183482
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  183528 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 2953848 - 2953750
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||||  |||| |||||| || |||||| ||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  2953848 ggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 2953750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 10304009 - 10304059
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccac 182  Q
    |||| |||||||| ||| |||||||||||||||||||||||| | ||||||    
T  10304009 aaaatttaatcatttaaaatttcgtccctctccccacttaatcactgccac 10304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 21444680 - 21444738
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||| |||||||  ||| ||||||||| |||||||||||||| | ||||||||||||||    
T  21444680 aaaatttaatcacttaaaatttcgtccatctccccacttaatcactgccacgtcactaa 21444738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 22103848 - 22103790
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||| |||||||  ||| |||||||||||||| ||||||||| | ||||||||||||||    
T  22103848 aaaatttaatcacttaaaatttcgtccctctctccacttaatcactgccacgtcactaa 22103790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 24905473 - 24905427
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  24905473 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 24905427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 25647975 - 25648021
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  25647975 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 25648021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 28011454 - 28011500
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  28011454 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 28011500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 33442900 - 33442854
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  33442900 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 33442854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 42267389 - 42267447
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||| |||||||| ||| |||||||| ||||||||||||||| | | ||||||||||||    
T  42267389 aaaatttaatcatttaatatttcgtctctctccccacttaatcactaccacgtcactaa 42267447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 1103552 - 1103605
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || || ||||||||    
T  1103552 ttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaa 1103605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 1841550 - 1841603
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | ||||| ||||||||    
T  1841550 ttaatcatttaaaatttcgtcactctccccacttaatcactgccatgtcactaa 1841603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 14879062 - 14879115
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || || ||||||||    
T  14879062 ttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaa 14879115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 24701654 - 24701573
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcc 126  Q
    ||||||||||| |  ||||||||||| || |||| ||||||||| ||||| ||  |||  ||||||||||||||||||||||    
T  24701654 aggcttaaataggtctttcatccctgcaaatataagccatttgaattttcgtccctgaagttactaatccttccattttgcc 24701573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 30711418 - 30711471
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||| ||||||||||| | ||||| ||||||||    
T  30711418 ttaatcatttaaaatttcgtccctcgccccacttaatcactgccatgtcactaa 30711471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 32917351 - 32917404
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | |||||| |||||||    
T  32917351 ttaatcatttaaaatttcgtctctctccccacttaatcactgccacatcactaa 32917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 34464786 - 34464733
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||| ||||||||||||||||||| | ||||| ||||||||    
T  34464786 ttaatcatttaaaattttgtccctctccccacttaatcactgccatgtcactaa 34464733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 37152921 - 37152824
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||  |||| |||||| || ||||| |||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  37152921 gcttaaatatgtctttcgtccctgcaaatatagtccatttgaattttcgtctctgaagttactaatccttccaatctgcccctgcaaatattaatcat 37152824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 43758913 - 43758966
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||| ||||||||| | ||||| ||||||||    
T  43758913 ttaatcatttaaaatttcgtccctctctccacttaatcactgccatgtcactaa 43758966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 46163121 - 46163174
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||||| || || ||||||||    
T  46163121 ttaatcatttaaaatttcgtctctctccccacttaattactgtcatgtcactaa 46163174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 19755791 - 19755691
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||||| |  |||| |||||| || |||||| ||||||| |||| |||  |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  19755791 taggcttaaataggtctttcgtccctgcaaatataggtcatttgaatttttatccctgaagttactaatccttccaatctgcccctgcaaatattaatca 19755692  T
Q  144 t 144  Q
    |    
T  19755691 t 19755691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 36380186 - 36380226
Alignment:
Q  49 cttaaatatgcatttcatccctgtaattataggccatttga 89  Q
    ||||||||||||||||||||||| || ||||||| ||||||    
T  36380186 cttaaatatgcatttcatccctgcaaatataggcaatttga 36380226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 40772598 - 40772634
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  40772598 ttaatcatttaaaatttcgtccctctccccacttaat 40772634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 32717207 - 32717065
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||||    
T  32717207 taggcttaaatatgcatttcatccctgtaattataggtcatttgatttttcatccctaaacttactaatccttccattttgcccctgtaaaaattaatca 32717108  T
Q  144 tctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | ||| ||||||||||||| |||| ||||||| ||||||||||    
T  32717107 tttaaaatttcgtccctcttcccaattaattactgccacgtca 32717065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 29192034 - 29192188
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||    
T  29192034 aggctgaaatatgcatttcatccctgtaattataggccatttgatttttcattcctgagcttactaatccttccgttttgcccctgtaaaaattaatcat 29192133  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtcactaagtcagcaaa 199  Q
     ||| ||||||||||||| |||  ||||| | |||||||||| ||| | ||||||    
T  29192134 ttaaaatttcgtccctcttcccgattaatcactgccacgtcattaaattagcaaa 29192188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 29193094 - 29192977
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |||||||||||||||||| ||    
T  29193094 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccctgagcttactaatcctcccatttcgcccctgtaaaaattaattat 29192995  T
Q  145 ctaagatttcgtccctct 162  Q
     ||| |||| ||||||||    
T  29192994 ttaaaattttgtccctct 29192977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 2943911 - 2944053
Alignment:
Q  45 taggcttaaatatgcatttc-atccctgtaattataggccatttgatttttcatcatgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||    
T  2943911 taggcttaaatatgcttttctatccctgcaattataggccgtttgatttttcatcctgagcttactaatcctcctattttgcccctgtaaaagttaatca 2944010  T
Q  144 tctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | | | | ||||||||||| |||  ||||| | ||||||||||    
T  2944011 tttgaaagttcgtccctcttcccggttaatcactgccacgtca 2944053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 48189200 - 48189083
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||||||    
T  48189200 aggcttaaatatgcttttcatccttgtaattataggccgtttgatttttcatccctgagcttactaatccttccattttgcccctgtaattactaatcat 48189101  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  48189100 ttgaaagttcgtccctct 48189083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 1757405 - 1757317
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1757405 aggcttaaatatgattttcatccctgtaattataggccgtttgatttttcatccatgaacttactaatccttccattttgcccctgtaa 1757317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 45279384 - 45279268
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||     
T  45279384 ggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatt 45279285  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  45279284 tgaaagttcgtccctct 45279268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 2944768 - 2944650
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||||||  | ||||||    
T  2944768 taggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccatccattttgcccctgtaattactaatca 2944669  T
Q  144 tctaagatttcgtccctct 162  Q
    | | | | |||||||||||    
T  2944668 tttgaaagttcgtccctct 2944650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 44482048 - 44481966
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  44482048 aaatatgcttttcatccctgtaattatgggccatttgatttttcatccatgagcttactaatcctcccattttgcccctgtaa 44481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 22736792 - 22736703
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  22736792 taggcttaaatatgtttttcatccctgtaattataggtcatttgatttttcatccctgagcttactaatcctcccattttgcccctgtaa 22736703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 11026732 - 11026616
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||  | |||||||     
T  11026732 ggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttaccaatccttccattttgcccctgtaattactaatcatt 11026633  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  11026632 tgaaagttcgtccctct 11026616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 1756550 - 1756666
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    |||||||||||   |||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||  | |||||||     
T  1756550 ggcttaaatatatttttcatccttgtaattataggccgtttgatttttcatccatgaacttactaatccttccattttgcccctgtaattactaatcatt 1756649  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  1756650 tgaaagttcgtccctct 1756666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 37249204 - 37249319
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||||||||||  | ||||||| | | |    
T  37249204 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccctgagcttattaatcctcccattttgcccctgtaattactaatcatttgaaa 37249303  T
Q  151 tttcgtccctctcccc 166  Q
     |||||||||||||||    
T  37249304 gttcgtccctctcccc 37249319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 45278549 - 45278660
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| | |||  |||||||||||||||||||||||||||||  | ||||||| | | |    
T  45278549 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaatttactaatccttccattttgcccctgtaattactaatcatttgaaa 45278648  T
Q  151 tttcgtccctct 162  Q
     |||||||||||    
T  45278649 gttcgtccctct 45278660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 48188383 - 48188494
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||||||| | | |    
T  48188383 aaatatgtttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatttgaaa 48188482  T
Q  151 tttcgtccctct 162  Q
     |||||||||||    
T  48188483 gttcgtccctct 48188494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 43105920 - 43105818
Alignment:
Q  61 tttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccc 159  Q
    ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||| ||||||||||||||||  | ||||||| | | | ||||||||    
T  43105920 tttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatcctttcattttgcccctgtaattactaatcatttgaaagttcgtccc 43105821  T
Q  160 tct 162  Q
    |||    
T  43105820 tct 43105818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 43105233 - 43105320
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    ||||||||||||  || ||||| |||||||||||||| ||||||||||||| | ||| ||||||||||||| ||||||||||||||||    
T  43105233 ggcttaaatatgttttacatccttgtaattataggccgtttgatttttcatccctgaacttactaatcctttcattttgcccctgtaa 43105320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 44476054 - 44476136
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||  |||||||||||||||||| |||||||||||||||||| | ||| |||||||||||| |||||||||||| ||||    
T  44476054 aaatatgtttttcatccctgtaattatgggccatttgatttttcatccctgaacttactaatcctcccattttgcccccgtaa 44476136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 22129004 - 22129104
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||||| |  ||||||||| |||| ||||||| |||||| ||||| ||| |||  ||||||||||||||| |||||||||| ||| ||||||||    
T  22129004 taggcttaaataggtctttcatccccgtaaatataggctatttgaattttcgtcactgaagttactaatccttccaatttgcccctgcaaatattaatca 22129103  T
Q  144 t 144  Q
    |    
T  22129104 t 22129104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 37249892 - 37249782
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| |||||||| || ||||||||||| ||||||||||||||  |||||||||||||||| ||||| ||||| |||||  | ||||||| | | |    
T  37249892 aaatatgcttttcatcc-tgcaattataggccgtttgatttttcatccctgagcttactaatcctcccattctgcccttgtaattactaatcatttgaaa 37249794  T
Q  151 tttcgtccctct 162  Q
     |||||||||||    
T  37249793 gttcgtccctct 37249782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 33689716 - 33689663
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  33689716 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 33689663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 11025959 - 11026053
Alignment:
Q  69 ctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctct 162  Q
    ||||||||||| ||| ||||||||||||||  ||| ||||||||||||||||||||||| || |||  | ||||||| | | | |||||||||||    
T  11025959 ctgtaattataagccgtttgatttttcatccctgaacttactaatccttccattttgcctctataattactaatcatttgaaagttcgtccctct 11026053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 51994223 - 51994173
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcac 187  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||||||    
T  51994223 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcac 51994173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 23458316 - 23458263
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||| |||||||    
T  23458316 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacatcactaa 23458263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 26463935 - 26463882
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || |||||||||||    
T  26463935 ttaatcatttaaaatttcgtccctctccccacttaatcactgtcacgtcactaa 26463882  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 32716284 - 32716365
Alignment:
Q  82 ccatttgatttttcatcat-gagcttactaatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctct 162  Q
    ||||||||||||| ||| | ||| |||||||||||  |||||| ||| |||||||||||| ||| ||| |||||||||||||    
T  32716284 ccatttgattttttatccttgagtttactaatcctctcattttacccttgtaaaaattaaccatttaaaatttcgtccctct 32716365  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 33156331 - 33156278
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||    
T  33156331 ttaatcatttaaaatttcgtccctccccccacttaatcactgccacgtcactaa 33156278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 40758235 - 40758288
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | | ||||||||||||    
T  40758235 ttaatcatttaaaatttcgtccctctccccacttaatcactaccacgtcactaa 40758288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 2796270 - 2796316
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  2796270 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 2796316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 8041707 - 8041753
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  8041707 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 8041753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 10770797 - 10770751
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  10770797 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 10770751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 36314604 - 36314558
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  36314604 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 36314558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 48322683 - 48322637
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  48322683 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 48322637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 54466514 - 54466560
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  54466514 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 54466560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 9294295 - 9294242
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || || ||||||||    
T  9294295 ttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaa 9294242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 1741385 - 1741485
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||| || |||||| ||||||| ||||| | | |||  ||||||||||||||| | ||||| || ||| ||||||||    
T  1741385 taggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatattaatca 1741484  T
Q  144 t 144  Q
    |    
T  1741485 t 1741485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 55036683 - 55036767
Alignment:
Q  61 tttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||| |||||| || |||||| ||||||| ||||||| | |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  55036683 tttcgtccctgcaaatataggtcatttgaattttcattcctgaagttactaatccttccaatctgcccctgcaaatattaatcat 55036767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 55037055 - 55036955
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||| |||||||||  |||| |||||| || |||||| ||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  55037055 taggtttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgttcttgaagttactaatccttccaatctgcccctgcaaatattaatca 55036956  T
Q  144 t 144  Q
    |    
T  55036955 t 55036955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 57)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 22870564 - 22870422
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||    
T  22870564 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccctgagcttactaatcctcccattttgcccctgtaaaaattaatca 22870465  T
Q  144 tctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | ||| |||||||| |||| |||  ||||| | ||||||||||    
T  22870464 tttaaaatttcgtctctcttcccgattaatcactgccacgtca 22870422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 20856930 - 20857072
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||    
T  20856930 taggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgagcttactaatcctcccattttgcccctgtaaaagttaatca 20857029  T
Q  144 tctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | | | ||||||||||||| |||  ||||| | ||||||||||    
T  20857030 tttgaaatttcgtccctcttcccggttaatcactgccacgtca 20857072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 22869612 - 22869745
Alignment:
Q  54 atatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatctaagatt 152  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||| ||| |||    
T  22869612 atatgcatttcatccttgtaattataggccatttgatttttcatccctgagcttactaatcctcccattttgcccctgtaaaaattaaccatttaaaatt 22869711  T
Q  153 tcgtccctctccccacttaattattgccacgtca 186  Q
    |||||||||| |||  ||||| | ||||||||||    
T  22869712 tcgtccctcttcccggttaatcactgccacgtca 22869745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 20857649 - 20857531
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||||| | | |||||||||||||| ||||||||||||||||||| |||||||    
T  20857649 taggcttaaatatgcttttcatccatgtaattataggccgtttgatttttcattcctaagcttactaatcctcccattttgcccctgtaaaagttaatca 20857550  T
Q  144 tctaagatttcgtccctct 162  Q
    | | | |||||||||||||    
T  20857549 tttgaaatttcgtccctct 20857531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 36477471 - 36477356
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||  | ||||||| | | |    
T  36477471 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccatgagcttactaatcctcccattttgcccctgtaattactaatcatttgaaa 36477372  T
Q  151 tttcgtccctctcccc 166  Q
     |||||||||||||||    
T  36477371 gttcgtccctctcccc 36477356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 20072971 - 20072853
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||||||    
T  20072971 taggcttaaatatgcttttcatccctgtaattataggtcgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatca 20072872  T
Q  144 tctaagatttcgtccctct 162  Q
    | | | | |||||||||||    
T  20072871 tttgaaagttcgtccctct 20072853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 39181056 - 39181173
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||    
T  39181056 aggcttaaatatgcttttcatccctgtaattataagccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcat 39181155  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  39181156 ttgaaagttcgtccctct 39181173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 20072121 - 20072261
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||||||| | ||| ||||||||||||| ||||||||||||||||  | |||||||     
T  20072121 ggcttaaatatgcttttcatctctgtaattataggccgtttgatttttcatccctgaacttactaatcctttcattttgcccctgtaattactaatcatt 20072220  T
Q  146 taagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | | | ||||||||||| ||||  |||| | ||||||||||    
T  20072221 tgaaagttcgtccctcttcccagataatcactgccacgtca 20072261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 14744831 - 14744732
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||||||| | ||| |||||||||||| |||||||||||||| ||| |||||||||    
T  14744831 aggcttaaatatgcatttcatccctgcaattatatgtcatttgatttttcatccctgaacttactaatcctcccattttgcccctgcaaatattaatcat 14744732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 8654105 - 8654191
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |||||    
T  8654105 taggcttaaatatgtttttcatccctgtaattataggtcatttgatttttcatccatgagcttactaatcctcccattttgtccctg 8654191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 16533725 - 16533572
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||||||||||  ||| |||| |||||||||||||||||||||||||  | |||||||     
T  16533725 ggcttaaatatgcttttcatccctataattataggccgtttgatttttcatctctgaacttattaatccttccattttgcccctgtaattactaatcatt 16533626  T
Q  146 taagatttcgtccctctccccacttaattattgccacgtcactaagtcagcaaa 199  Q
    | | | ||||||||||| |||   |||| | |||||||||| ||| | ||||||    
T  16533625 tgaaagttcgtccctcttcccggataatcactgccacgtcattaaattagcaaa 16533572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 21979073 - 21978976
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatcat-gagcttactaatccttccattttgcccctgtaaaaattaat 141  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | || |||||||||||| | |||||  ||||||||||||||||    
T  21979073 taggcttaaatatgcatttcatccctgcaattataagccatttgatttttcatcctcgaacttactaatcctcctattttatccctgtaaaaattaat 21978976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 31107930 - 31108015
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||| ||||||    
T  31107930 aggcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccctgaacttactaatcctcccattttacccctg 31108015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 16532898 - 16533046
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| | ||| |||| |||||||||||||||||||||||||  | ||||||| | | |    
T  16532898 aaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttattaatccttccattttgcccctgtaattactaatcatttgaaa 16532997  T
Q  151 tttcgtccctctccccacttaattattgccacgtcactaagtcagcaaa 199  Q
     ||||||||||| |||   |||| | |||||||||| ||| | ||||||    
T  16532998 gttcgtccctcttcccggataatcactgccacgtcattaaattagcaaa 16533046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 21978112 - 21978030
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||| |||||||||||||    
T  21978112 aaatatgcttttcatccctgtaattatgggccatttgatttttcatccctgagcttactaatcctcccactttgcccctgtaa 21978030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 21972095 - 21972176
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcatcatgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||| |||||||    
T  21972095 aaatatgtttttcatccctgtaattatgggccatttgatttttcatcctcagcttactaatcctcccattttgctcctgtaa 21972176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 36476770 - 36476886
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||| ||||||||||| |||||  | ||||||| | | |    
T  36476770 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccctgagcttactaatcctcccattttgcccttgtaattactaatcatttgaaa 36476869  T
Q  151 tttcgtccctctcccca 167  Q
     ||||||||||| ||||    
T  36476870 gttcgtccctcttccca 36476886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 39181896 - 39181780
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||  ||| ||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||     
T  39181896 ggcttaaatatgtttttaatccctgtaattataggtcgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatt 39181797  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  39181796 tgaaagttcgtccctct 39181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 31108439 - 31108340
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||| ||||||||| |||||||||||| || |||| | ||||||||||||||| ||||| |||||||||| |||||||||  ||||||||| ||||||||    
T  31108439 taggtttaaatatgtatttcatccctgcaaatata-gacatttgatttttcatccatgaacttactaatctttccattttatccctgtaaatattaatca 31108341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 32242333 - 32242386
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  32242333 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 32242386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 8673859 - 8673777
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgccc 127  Q
    ||||| |||||||||||||||||||| || ||||||||||||||  |||||| | ||| ||| ||||| || |||||||||||    
T  8673859 aggctaaaatatgcatttcatccctgcaaatataggccatttgaaatttcatccttgaacttgctaattctcccattttgccc 8673777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 5993980 - 5994033
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||    
T  5993980 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaa 5994033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 25253087 - 25253184
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||  ||||||||||| || |||||  ||||||| ||||| ||  |||  ||||||||||||||| |||||||||| ||| |||||||||    
T  25253087 gcttaaatatgtctttcatccctgcaaatatagttcatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcat 25253184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 25316877 - 25316974
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||  ||||||||||| || |||||  ||||||| ||||| ||  |||  ||||||||||||||| |||||||||| ||| |||||||||    
T  25316877 gcttaaatatgtctttcatccctgcaaatatagttcatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcat 25316974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 35512239 - 35512292
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||| |||||||    
T  35512239 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacatcactaa 35512292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 6150545 - 6150589
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgcca 181  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||    
T  6150545 ttaatcatttaaaatttcgtccctctccccacttaatcattgcca 6150589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 7015506 - 7015606
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||||| |  |||| |||||| || |||||||||||||| ||||||| |||||  ||||||||| ||||| | |||| ||| ||| ||||||||    
T  7015506 taggcttaaataggtctttcgtccctgcaaatataggccatttgaattttcatccatgaagttactaatcattccaatctgccactgcaaatattaatca 7015605  T
Q  144 t 144  Q
    |    
T  7015606 t 7015606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 14745446 - 14745546
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||||| |  |||| |||||| || |||||| ||||||| ||||||||  |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  14745446 taggcttaaataggtctttcgtccctgcaaatataggtcatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatca 14745545  T
Q  144 t 144  Q
    |    
T  14745546 t 14745546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 32052222 - 32052322
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| ||||||||| |||||| ||||||| ||||| | | |||  ||||||||||||||| |  ||||||| ||| ||||||||    
T  32052222 taggcttaaatatgtttttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatccgcccctgcaaatattaatca 32052321  T
Q  144 t 144  Q
    |    
T  32052322 t 32052322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 33735311 - 33735411
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||  || |||||||||||||||||||| | | |||  ||||||||||||||| | || ||||| ||| ||||||||    
T  33735311 taggcttaaatatgtctttcgtccctacaaatataggccatttgatttttcgtccctgaaattactaatccttccaatctgtccctgcaaatattaatca 33735410  T
Q  144 t 144  Q
    |    
T  33735411 t 33735411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 37944992 - 37945092
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||||| |  |||| ||| ||||| |||||| ||||||| ||||| ||  |||  ||||||||||||||| |||||||||| ||| ||||||||    
T  37944992 taggcttaaataggtctttcgtccttgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatca 37945091  T
Q  144 t 144  Q
    |    
T  37945092 t 37945092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 32052609 - 32052510
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| |||||| || |||||| ||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  32052609 aggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 32052510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 297320 - 297274
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  297320 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 297274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 3529179 - 3529133
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  3529179 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 3529133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 6758171 - 6758125
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  6758171 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 6758125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 8323070 - 8323136
Alignment:
Q  61 tttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcc 126  Q
    |||||||||| ||| |||||| ||||||| ||||| || ||||  ||||||||||||||||||||||    
T  8323070 tttcatccctataaatataggtcatttgaattttcgtccatgaagttactaatccttccattttgcc 8323136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 11761840 - 11761886
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| ||||||||| |||||||||||||| |||||||||    
T  11761840 ttaatcatttaaaatttcgtccatctccccacttaatcattgccacg 11761886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 12904840 - 12904898
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||| ||||| || ||| |||||||||||||||||||||||| | || |||||||||||    
T  12904840 aaaatttaataatttaaaatttcgtccctctccccacttaatcaatgtcacgtcactaa 12904898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 24547462 - 24547412
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcac 187  Q
    |||||||| ||| |||||||||||||||||||||||  | |||||||||||    
T  24547462 ttaatcatttaaaatttcgtccctctccccacttaaccactgccacgtcac 24547412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 41930607 - 41930653
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  41930607 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 41930653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 5024355 - 5024302
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||| |||||||||||||||| | |||||| |||||||    
T  5024355 ttaatcatttaaaatttcgttcctctccccacttaatcactgccacatcactaa 5024302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 11047528 - 11047581
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | ||||| ||||||||    
T  11047528 ttaatcatttaaaatttcgtctctctccccacttaatcactgccatgtcactaa 11047581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 13962955 - 13963008
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||||||||| |||||||| | || |||||||||||    
T  13962955 ttaatcatttaaaatttcgtccctctcctcacttaatcactgtcacgtcactaa 13963008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 14194760 - 14194707
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||| | ||||||||    
T  14194760 ttaatcatttaaaatttcgtccctctccccacttaatcactgctatgtcactaa 14194707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 19892645 - 19892592
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||  |||||||||||||| | ||||||||||||||    
T  19892645 ttaatcatttaaaatttcgtcattctccccacttaatcactgccacgtcactaa 19892592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 20840624 - 20840677
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||| || ||| |||| ||||||||||||||||||| | ||||||||||||||    
T  20840624 ttaatgatttaaaattttgtccctctccccacttaatcactgccacgtcactaa 20840677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 29646699 - 29646646
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || || ||||||||    
T  29646699 ttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaa 29646646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 38442159 - 38442204
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccac 182  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||    
T  38442159 ttaatcatttaaaatttcgtccctctccccacttaatcactgccac 38442204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 38475336 - 38475291
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccac 182  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||    
T  38475336 ttaatcatttaaaatttcgtccctctccccacttaatcactgccac 38475291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 39453391 - 39453444
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | || || ||||||||    
T  39453391 ttaatcatttaaaatttcgtccctctccccacttaatcactggcatgtcactaa 39453444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 8322495 - 8322531
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  8322495 ttaatcatttaaaatttcgtccctctccccacttaat 8322531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 18670290 - 18670334
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgcca 181  Q
    |||||||| ||| ||||||||| |||||||||||||| |||||||    
T  18670290 ttaatcatttaaaatttcgtccatctccccacttaatcattgcca 18670334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 28269725 - 28269689
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  28269725 ttaatcatttaaaatttcgtccctctccccacttaat 28269689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 28771175 - 28771139
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  28771175 ttaatcatttaaaatttcgtccctctccccacttaat 28771139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 31482708 - 31482672
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  31482708 ttaatcatttaaaatttcgtccctctccccacttaat 31482672  T

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Target: chr5; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 35920521 - 35920485
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  35920521 ttaatcatttaaaatttcgtccctctccccacttaat 35920485  T

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Target: chr5; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 39402190 - 39402150
Alignment:
Q  104 cttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  39402190 cttactaatcctcccattttgcccctgcaaatattaatcat 39402150  T

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Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 25623288 - 25623428
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||     
T  25623288 ggcttaaatatgcatttcatccctataattataggccatttgatttttcatccctgagcttactaatcctcccattttgcccctgtaaaaattaatcatt 25623387  T
Q  146 taagatttcgtccctctccccacttaattattgccacgtca 186  Q
    ||| ||||||||||||| |||  ||||| | ||||||||||    
T  25623388 taaaatttcgtccctctacccggttaatcactgccacgtca 25623428  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 25624533 - 25624417
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||     
T  25624533 ggcttaaatatgcatttcatccctgtaattataggtcatttgatttttcatccctgagcttactaatcctcccatttttcccctgtaaaaattaatcatt 25624434  T
Q  146 taagatttcgtccctct 162  Q
    ||| |||||||||||||    
T  25624433 taaaatttcgtccctct 25624417  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 29957816 - 29957957
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||    
T  29957816 aggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcat 29957915  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
     | | | ||||||||||| |||  ||||| ||||||||||||    
T  29957916 ttgaaagttcgtccctcttcccggttaatcattgccacgtca 29957957  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 24387349 - 24387449
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||| |||||||| || |||||||||||||||    
T  24387349 taggcttaaatatgcatttcatccctgcaattataggccatttaatttttcatccctgagcttactaatcctcccattttgtccatgtaaaaattaatca 24387448  T
Q  144 t 144  Q
    |    
T  24387449 t 24387449  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 24388358 - 24388258
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||| ||||||| || |||||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||    
T  24388358 taggcttaaatatgcatttcatccctgcaattataagcaatttgatttttcatccctgagcttactaatccttccattttgccattgtaaaaattaatca 24388259  T
Q  144 t 144  Q
    |    
T  24388258 t 24388258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 20101768 - 20101854
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  20101768 taggcttaaatatgcttttcatccctgtaattataggccatttgatttttcatccctgagcttactaatcctcccattttgcccctg 20101854  T

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Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 20982523 - 20982611
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  20982523 aggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaa 20982611  T

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Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 20983361 - 20983245
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||     
T  20983361 ggcttaaatatgcttttcatccctgtaattatagaccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatt 20983262  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  20983261 tgaaagttcgtccctct 20983245  T

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Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 20103245 - 20103163
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgccc 127  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||||||    
T  20103245 aggcttaaatatgctttttatccctgtaattataggccattagatttttcatccctgagcttactaatcctcccattttgccc 20103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 29958647 - 29958507
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||  ||||||||||||||||||||||  ||||||||||||| | ||| |||||||||||||||||||||||||| |||  | |||||||     
T  29958647 ggcttaaatatgtttttcatccctgtaattataggctgtttgatttttcatccctgaacttactaatccttccattttgcccctataattactaatcatt 29958548  T
Q  146 taagatttcgtccctctccccacttaattattgccacgtca 186  Q
    | | | |||||| |||| |||  ||||| | ||||||||||    
T  29958547 tgaaagttcgtctctcttcccggttaatcactgccacgtca 29958507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 2318249 - 2318302
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  2318249 ttaatcatttaaaatttcgtccctctccccacttaattaatgccacgtcactaa 2318302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 19620886 - 19620795
Alignment:
Q  54 atatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||| |||||  || |||||| |||||||  |||||||  ||| ||||||||||||||||||||||||||| ||| |||||||||    
T  19620886 atatgcatttcgtccctacaaatataggtcatttgaaatttcatccctgaacttactaatccttccattttgcccctgcaaatattaatcat 19620795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 15848179 - 15848232
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  15848179 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 15848232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 37895684 - 37895631
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  37895684 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 37895631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 16366962 - 16367061
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| ||||||||| |||||| ||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  16366962 aggcttaaatatgtctttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 16367061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 6846856 - 6846922
Alignment:
Q  118 cattttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgt 184  Q
    ||||||| ||||| |||| | |||||| ||| ||||||||||||| |||||||||||| ||||||||    
T  6846856 cattttgtccctgcaaaattgaatcatttaaaatttcgtccctcttcccacttaattactgccacgt 6846922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 10446832 - 10446930
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||||  |||| |||||| || |||||||||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  10446832 ggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 10446930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 6848099 - 6848022
Alignment:
Q  109 taatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
    |||||||  ||||||| ||||| |||| |||||||| ||| ||||||||| || ||||||||||||| | ||||||||    
T  6848099 taatcctgacattttgtccctgaaaaatttaatcatttaaaatttcgtccatcaccccacttaattactaccacgtca 6848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 36382252 - 36382305
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||    
T  36382252 ttaatcatttaaaatttcatccctctccccacttaatcactgccacgtcactaa 36382305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 39423606 - 39423659
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||    
T  39423606 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaa 39423659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 44714098 - 44714045
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||    
T  44714098 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaa 44714045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 33881580 - 33881672
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||| |||||| |||||||  |||||| | | || ||| |||| || |||||||||| ||| ||| ||||||||    
T  33881580 aaatatgcatttcatccctgtaaatatagggcatttgaaatttcatccctaaggttattaattctcccattttgccactgcaaatattaatca 33881672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 33882967 - 33882892
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcc 126  Q
    |||||||||||||||||||| || |||| | |||||||  ||||||  ||||| ||||||||||| ||||||||||    
T  33882967 aaatatgcatttcatccctgcaaatataaggcatttgaaatttcatatatgaggttactaatcctcccattttgcc 33882892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 43236502 - 43236573
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatcct 115  Q
    |||||| |||||||||||| ||||||| || ||||||||||||||  |||||| | ||| ||||||||||||    
T  43236502 taggctaaaatatgcattttatccctgcaaatataggccatttgaaatttcatccctgaacttactaatcct 43236573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 6657969 - 6658015
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  6657969 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 6658015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 11689627 - 11689685
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||| |||||||  ||| ||||||||| |||||||||||||| | ||||||||||||||    
T  11689627 aaaatttaatcacttaaaatttcgtccatctccccacttaatcactgccacgtcactaa 11689685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 14900789 - 14900743
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  14900789 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 14900743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 16099146 - 16099192
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  16099146 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 16099192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 33739794 - 33739840
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  33739794 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 33739840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 39498401 - 39498447
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  39498401 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 39498447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 10712814 - 10712867
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||| |||||||||||||||||| | | ||||||||||||    
T  10712814 ttaatcatttaaaatttcatccctctccccacttaatcactaccacgtcactaa 10712867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 10840539 - 10840620
Alignment:
Q  109 taatccttccattttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||  ||||||||| ||  |||| |||||||| |||  |||||||||||| |||||||||| | || |||||||||||    
T  10840539 taatcctgacattttgccacttcaaaatttaatcatttaaactttcgtccctcttcccacttaatcactgtcacgtcactaa 10840620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 25892485 - 25892538
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| | |||||||||||||||||||||||| | ||||||| ||||    
T  25892485 ttaatcatttaaaaattcgtccctctccccacttaattactaccacgtctctaa 25892538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 36479809 - 36479862
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||| |||||||||||||| | ||||| ||||||||    
T  36479809 ttaatcatttaaaatttcgtccatctccccacttaatcactgccatgtcactaa 36479862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 36755184 - 36755237
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | || |||||||||||    
T  36755184 ttaatcatttaaaatttcgtctctctccccacttaatcactgtcacgtcactaa 36755237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 11163360 - 11163324
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  11163360 ttaatcatttaaaatttcgtccctctccccacttaat 11163324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 16367333 - 16367249
Alignment:
Q  61 tttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||| |||||| || |||||||||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  16367333 tttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcat 16367249  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 23455790 - 23455649
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttca-tcatgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||| |||||||||||||||||    
T  23455790 aggcttaaatatgcatttcatccctgtaattataggtcatttgatttttcattcctgagcttactaatcctcccattttgccactgtaaaaattaatcat 23455691  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
     | | ||||||||||||| |||  ||||| | ||||||||||    
T  23455690 ttcaaatttcgtccctcttcccgattaatcactgccacgtca 23455649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 23454953 - 23455070
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||  |||    
T  23454953 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccctgagcttactaatcatcccattttgcccctgtaaaaattacccat 23455052  T
Q  145 ctaagatttcgtccctct 162  Q
     ||| ||| |||||||||    
T  23455053 ttaaaattccgtccctct 23455070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 56556581 - 56556698
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||  | |||||||    
T  56556581 aggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccatgaacttactaatccttccattttgcccctgtaattactaatcat 56556680  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  56556681 ttgaaagttcgtccctct 56556698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 38813554 - 38813641
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  38813554 ggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaa 38813641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 55013189 - 55013102
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatcatgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  55013189 aggcttaaatatgcttttcatccatgtaattataggctatttgatttttcatcctgagcttactaatcctcccagtttgcccctgtaa 55013102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 56557424 - 56557309
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatct 146  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||  | ||||||| |    
T  56557424 gcttaaatatgcttttcatccctctaattataggccgtttgatttttcatccatgaacttactaatccttccattttgcccctgtaattactaatcattt 56557325  T
Q  147 aagatttcgtccctct 162  Q
     | | |||||||||||    
T  56557324 gaaagttcgtccctct 56557309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 52816524 - 52816407
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||||  | |||||||    
T  52816524 aggcttaaatatgattttcatccctgtaattataggccgtttgatttttcatctctgaacttactaatccttccattttgcccctgtaattactaatcat 52816425  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  52816424 ttgaaagttcgtccctct 52816407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 53477182 - 53477082
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||  ||| |||||||||||| |||||||||||||| ||| ||||||||    
T  53477182 taggcttaaatatgcatttcatctctgcaattataggtcatttgatttttcatctctgaacttactaatcctcccattttgcccctgcaaatattaatca 53477083  T
Q  144 t 144  Q
    |    
T  53477082 t 53477082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 38982691 - 38982576
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcatctaaga 150  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||  | ||||||| | | |    
T  38982691 aaatatgcttttcatccctgcaattataggccgtttgatttttcatccctgagcttactaatcctcccattttgcccctgtaattactaatcatttgaaa 38982592  T
Q  151 tttcgtccctctcccc 166  Q
     |||||||||||||||    
T  38982591 gttcgtccctctcccc 38982576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 38814428 - 38814311
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| |||||||| ||||||| |||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||    
T  38814428 aggcttaaatatgcttttcatccttgtaattttaggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcat 38814329  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  38814328 ttgaaagttcgtccctct 38814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 52815662 - 52815750
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| || | ||| ||||||||||||| ||||||||||||||||    
T  52815662 aggcttaaatatgcttttcatccctgtaattataggccgtttgattttttatccctgaacttactaatcctttcattttgcccctgtaa 52815750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 54590146 - 54590241
Alignment:
Q  50 ttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||  ||| ||||||||| ||||||||||||| ||  ||| |||||||||    
T  54590146 ttaaatatgcatttcatccctgcaattataggtcatttgatttttcatctttgaacttactaattcttccattttgcctctacaaatattaatcat 54590241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 54591678 - 54591587
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaat 137  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||| | ||| |||||||| ||| |||||||||||||| ||||||    
T  54591678 ggcttaaatatgcatttcatccctgcaattatagatcatttgatttttcatccctgaacttactaaacctcccattttgcccctgcaaaaat 54591587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 13336940 - 13336863
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccatt 121  Q
    ||||||||||||||||||||||||||| || |||||| |||||||  |||||| | ||| |||||||||||| |||||    
T  13336940 taggcttaaatatgcatttcatccctgcaaatataggtcatttgaaatttcatccctgaacttactaatcctcccatt 13336863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 14801827 - 14801880
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  14801827 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 14801880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 34765717 - 34765664
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  34765717 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 34765664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 47862537 - 47862438
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| ||| ||||| |||||||||||||| ||||| || ||||  ||||||||||||| | |||||||||| ||| ||||||||    
T  47862537 taggcttaaatatgtctttcgtcc-tgtaaatataggccatttgaattttcgtccatgaagttactaatccttctaatttgcccctgcaaatattaatca 47862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 22881167 - 22881218
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc 98  Q
    |||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  22881167 ggctaaaatatgcatttcatccctgtaaatataggccatttgaaatttcatc 22881218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 22932831 - 22932882
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc 98  Q
    |||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  22932831 ggctaaaatatgcatttcatccctgtaaatataggccatttgaaatttcatc 22932882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 9254405 - 9254475
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatcct 115  Q
    ||||| |||||||||||||||||||| || ||||||||||||||  |||||| | ||| ||||||||||||    
T  9254405 aggctaaaatatgcatttcatccctgcaaatataggccatttgaaatttcatccttgaacttactaatcct 9254475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 16605692 - 16605746
Alignment:
Q  136 attaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||    
T  16605692 attaatcatttaaaatttcgtccctccccccacttaatcactgccacgtcactaa 16605746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 24349764 - 24349818
Alignment:
Q  136 attaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||||    
T  24349764 attaatcatttaaaatttcgtccctctccccagttaatcactgccacgtcactaa 24349818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 52298107 - 52298169
Alignment:
Q  127 cctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcacta 189  Q
    |||| |||| |||||||| ||| |||||||| ||||||||||||||| | |||||||||||||    
T  52298107 cctgcaaaatttaatcatttaaaatttcgtctctctccccacttaatcactgccacgtcacta 52298169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 35028335 - 35028282
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | ||||||||||||||    
T  35028335 ttaatcatttaaaatttcgtcactctccccacttaatcactgccacgtcactaa 35028282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 41583583 - 41583518
Alignment:
Q  122 ttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcac 187  Q
    ||||||||| |||| |||||||| ||| ||||||||||||| | |||||||| | |||||||||||    
T  41583583 ttgcccctgcaaaagttaatcatttaaaatttcgtccctcttctcacttaatcactgccacgtcac 41583518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 53701903 - 53701956
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||    
T  53701903 ttaatcatttaaaatttcttccctctccccacttaatcactgccacgtcactaa 53701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 22250119 - 22250019
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||| || |||||||||||||| ||||| | | |||  |||||||| |||||| | |||||||| ||| ||||||||    
T  22250119 taggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatca 22250020  T
Q  144 t 144  Q
    |    
T  22250019 t 22250019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 41582523 - 41582591
Alignment:
Q  122 ttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||||||| |||| |||||||| ||| ||||||||||||  | || ||||| ||||||||||||||||    
T  41582523 ttgcccctgcaaaagttaatcatttaaaatttcgtccctcatcacagttaatcattgccacgtcactaa 41582591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 4983033 - 4982986
Alignment:
Q  136 attaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    ||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  4983033 attaatcatttaaaatttcgtccctctccccacttaatcactgccacg 4982986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 53559772 - 53559673
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| |||||| || |||||||||||||| ||||| | | |||  ||||||||| ||||| | |||||||| ||| |||||||||    
T  53559772 aggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatcgttccaatctgcccctgcaaatattaatcat 53559673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 9145072 - 9145026
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  9145072 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 9145026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 13058128 - 13058174
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  13058128 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 13058174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 17356256 - 17356206
Alignment:
Q  140 atcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||| ||| |||||||||||||||||||||||| | || |||||||||||    
T  17356256 atcatttaaaatttcgtccctctccccacttaatcactgtcacgtcactaa 17356206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 23613400 - 23613446
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  23613400 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 23613446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 27934623 - 27934669
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  27934623 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 27934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 36009150 - 36009104
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  36009150 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 36009104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 42738337 - 42738291
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  42738337 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 42738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 43155833 - 43155787
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  43155833 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 43155787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 49879513 - 49879467
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  49879513 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 49879467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 15508010 - 15507957
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | |||| |||||||||    
T  15508010 ttaatcatttaaaatttcgtctctctccccacttaatcactgccgcgtcactaa 15507957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 37976490 - 37976437
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | ||||| ||||||||    
T  37976490 ttaatcatttaaaatttcgtcactctccccacttaatcactgccatgtcactaa 37976437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 40387543 - 40387608
Alignment:
Q  122 ttgcccctgtaaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcac 187  Q
    ||||||||| |||| |||||||| ||| ||||||| ||||| | |||||||| | |||||||||||    
T  40387543 ttgcccctgcaaaagttaatcatttaaaatttcgttcctcttctcacttaatcactgccacgtcac 40387608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 44967375 - 44967330
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccac 182  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||    
T  44967375 ttaatcatttaaaatttcgtccctctccccacttaatcactgccac 44967330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 52909344 - 52909397
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||| |||||||||||||| | ||||| ||||||||    
T  52909344 ttaatcatttaaaatttcgtccatctccccacttaatcactgccatgtcactaa 52909397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 20086435 - 20086535
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| || || ||| |||||| ||||||| ||||| ||  |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  20086435 taggcttaaatatgtctttcgtctctataaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatca 20086534  T
Q  144 t 144  Q
    |    
T  20086535 t 20086535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 22882428 - 22882376
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc 98  Q
    ||||| |||||||||||||||||||| || |||||| |||||||  |||||||    
T  22882428 aggctaaaatatgcatttcatccctgcaaatataggtcatttgaaatttcatc 22882376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 22934092 - 22934040
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc 98  Q
    ||||| |||||||||||||||||||| || |||||| |||||||  |||||||    
T  22934092 aggctaaaatatgcatttcatccctgcaaatataggtcatttgaaatttcatc 22934040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 24711202 - 24711238
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  24711202 ttaatcatttaaaatttcgtccctctccccacttaat 24711238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 33294529 - 33294429
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||| || ||||||| |||||| ||||| | | |||  ||||||||||||||  | |||||||| ||| ||||||||    
T  33294529 taggcttaaatatgtctttcctccctgcaaatataggcaatttgaattttcgtccctgaagttactaatccttccgatctgcccctgcaaatattaatca 33294430  T
Q  144 t 144  Q
    |    
T  33294429 t 33294429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 48529918 - 48529862
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcact 188  Q
    |||| |||||||| ||| |||| ||||||||| ||||||||| | ||||||||||||    
T  48529918 aaaatttaatcatttaaaattttgtccctctctccacttaatcactgccacgtcact 48529862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 50418974 - 50418938
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  50418974 ttaatcatttaaaatttcgtccctctccccacttaat 50418938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 53129830 - 53129790
Alignment:
Q  150 atttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||||||||||||||||||| | |||||| |||||||    
T  53129830 atttcgtccctctccccacttaatcactgccacatcactaa 53129790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 1231527 - 1231624
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  1231527 gcttaaatatgcatttcatccctacaattataggccctttgatttttcatccatgagcttactaatcctcccattttacccctgtaaaaattaatcat 1231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 34213763 - 34213904
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||| | ||||||||||||||||| ||||||||    
T  34213763 aggcttaaatatgcttttcatccctgcaattataggccgtttgatttttcatccctgagcttactaatcctcctattttgcccctgtaaaagttaatcat 34213862  T
Q  145 ctaagatttcgtccctctccccacttaattattgccacgtca 186  Q
     | | | ||||||||||| |||  ||||| | ||||||||||    
T  34213863 ttgaaagttcgtccctcttcccggttaatcactgccacgtca 34213904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 34665768 - 34665886
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||||||    
T  34665768 taggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatca 34665867  T
Q  144 tctaagatttcgtccctct 162  Q
    | | | | |||||||||||    
T  34665868 tttgaaagttcgtccctct 34665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 1232899 - 1232801
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    ||||| |||||||||||||||||||||||||||    
T  1232899 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatccctgagctt--gtatcctcccattttgcccctgtaaaaattaatca 1232802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 33497717 - 33497632
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  33497717 aggcttaaatatgcttttcatccctgtaattatagggcatttgatttttcatccatgagcttactaatcctcccattttgcccctg 33497632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 38598963 - 38599062
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||  ||||||||||||| ||| |||||||||    
T  38598963 aggcttaaatatgcatttcatccctgcaattataggccatttgatttttcatccctgaacttactaatcctctcattttgcccctgcaaatattaatcat 38599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 34214630 - 34214512
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttca--tcatgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||   | ||| ||||||||||||||||||||||||||||||  | ||||||    
T  34214630 aggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcaatccctgaacttactaatccttccattttgcccctgtaattactaatca 34214531  T
Q  144 tctaagatttcgtccctct 162  Q
    | | | | |||||||||||    
T  34214530 tttgaaagttcgtccctct 34214512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 25288178 - 25288078
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| | ||| ||||||||||||  ||||||||||||| ||| ||||||||    
T  25288178 taggcttaaatatgcatttcatcactgcaattataggtcatttgatttttcatccctgaacttactaatcctctcattttgcccctgcaaatattaatca 25288079  T
Q  144 t 144  Q
    |    
T  25288078 t 25288078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 7393245 - 7393147
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||  ||||||||||||| ||||||||| ||||||||||||||| | ||| |||||||||||| |||||||  ||||| ||| |||||||||    
T  7393245 ggcttaaatagacatttcatccctgcaattataggtcatttgatttttcatccctgaacttactaatcctcccattttatccctgcaaatattaatcat 7393147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 34666635 - 34666559
Alignment:
Q  52 aaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgccc 127  Q
    |||||||  ||||||| ||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||    
T  34666635 aaatatgtttttcatcgctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgccc 34666559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 4970125 - 4970219
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaa 140  Q
    |||| |||||||||||||||||||| |||||  || |||||||  |||||||  ||| ||||||||||||||||||||||||||| ||| |||||    
T  4970125 ggctaaaatatgcatttcatccctgcaattaggggtcatttgaaatttcatccctgaacttactaatccttccattttgcccctgcaaatattaa 4970219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 33497020 - 33497097
Alignment:
Q  51 taaatatgcatttcatccctgtaattataggccatttgatttttca-tcatgagcttactaatccttccattttgccc 127  Q
    ||||||||  |||||| | |||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||    
T  33497020 taaatatgattttcattcatgtaattataggtcatttgatttttcattcttgaacttactaatccttccattttgccc 33497097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 4463527 - 4463457
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatcct 115  Q
    |||||||||||||||||||||||||| || ||||||||||||||  |||||| | ||| ||||||||||||    
T  4463527 aggcttaaatatgcatttcatccctgcaagtataggccatttgaaatttcatccctgaacttactaatcct 4463457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 16388863 - 16388810
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  16388863 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 16388810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 36928567 - 36928620
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  36928567 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 36928620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 7783 - 7679
Alignment:
Q  41 atagtaggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctgtaaaaatta 139  Q
    |||| ||||||||||| |  |||| |||||| || |||||||||||||| ||||| || ||||  ||||||||||||||| | |||||||| ||| ||||    
T  7783 atagaaggcttaaataggtctttcgtccctgcaaatataggccatttgaattttcgtccatgaagttactaatccttccaatatgcccctgcaaatatta 7684  T
Q  140 atcat 144  Q
    |||||    
T  7683 atcat 7679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 31608849 - 31608797
Alignment:
Q  138 taatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    ||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  31608849 taatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 31608797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 25287791 - 25287890
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| ||||||||| ||| |||||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  25287791 aggcttaaatatgtctttcgtccctgtaaatattggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 25287890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 29574740 - 29574819
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccatttt 123  Q
    |||||| |||||||||||||||||||| || |||||| |||||||  |||||| | | | ||||||||||||||||||||    
T  29574740 taggctaaaatatgcatttcatccctgcaaatataggtcatttgaaatttcatccctaaacttactaatccttccatttt 29574819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 13186151 - 13186204
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||||||||| | ||||||||||||||    
T  13186151 ttaatcatttaaaatttcgtctctctccccacttaatcactgccacgtcactaa 13186204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 24379089 - 24379012
Alignment:
Q  54 atatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    |||||||||||||||||| |||||  || |||||||| |||||| | ||| |||||||||||| | ||||||||||||    
T  24379089 atatgcatttcatccctgcaattaggggtcatttgatatttcatccttgaacttactaatcctcctattttgcccctg 24379012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 35756673 - 35756726
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||    
T  35756673 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaa 35756726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 39071767 - 39071820
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | |||| |||||||||    
T  39071767 ttaatcatttaaaatttcgtccctctccccacttaatcactgccgcgtcactaa 39071820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 4462137 - 4462181
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttga 89  Q
    |||||| |||||||||||||||||||| || ||||||||||||||    
T  4462137 taggctaaaatatgcatttcatccctgcaaatataggccatttga 4462181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 27437619 - 27437571
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttc 95  Q
    ||||||||||||||||||||||||| || |||||||| ||||| |||||    
T  27437619 ggcttaaatatgcatttcatccctgcaaatataggccgtttgaattttc 27437571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 43866709 - 43866809
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||| || |||||||||||||| ||||| | | |||  |||||||| |||||| | |||||||| ||| ||||||||    
T  43866709 taggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatca 43866808  T
Q  144 t 144  Q
    |    
T  43866809 t 43866809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 36623738 - 36623639
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| |||||| || |||||||||||||| ||||| | | |||  |||||||| |||||| | |||||||| ||| |||||||||    
T  36623738 aggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatcat 36623639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 1425359 - 1425313
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  1425359 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 1425313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 3041762 - 3041716
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  3041762 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 3041716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 23663851 - 23663805
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  23663851 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 23663805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 36325325 - 36325371
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  36325325 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 36325371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 38845605 - 38845559
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  38845605 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 38845559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 40775956 - 40775910
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  40775956 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 40775910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 43867095 - 43866997
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||||  |||| |||||| || ||||| |||||||| ||||| | |||||  |||||||||||| || | |||||||| ||| |||||||||    
T  43867095 ggcttaaatatgtttttcgtccctgcaaatatagaccatttgaattttcgtccatgaagttactaatcctttcaatctgcccctgcaaatattaatcat 43866997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 44407163 - 44407117
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  44407163 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 44407117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 4405997 - 4405944
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||||||| |||||||||| | || |||||||||||    
T  4405997 ttaatcatttaaaatttcgtccctcttcccacttaatcactgtcacgtcactaa 4405944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 38862709 - 38862754
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccac 182  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||    
T  38862709 ttaatcatttaaaatttcgtccctctccccacttaatcactgccac 38862754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 23698581 - 23698545
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaat 173  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  23698581 ttaatcatttaaaatttcgtccctctccccacttaat 23698545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 27436563 - 27436611
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttc 95  Q
    ||||||||||||||||||||||||| || |||||| | ||||| |||||    
T  27436563 ggcttaaatatgcatttcatccctgcaaatataggtcgtttgaattttc 27436611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 41801818 - 41801914
Alignment:
Q  49 cttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    ||||||||||  |||| |||||| || |||||| ||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  41801818 cttaaatatgtttttcgtccctgcaaatataggtcatttgaattttcgttcctgaagttactaatccttccaatctgcccctgcaaatattaatcat 41801914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 4116798 - 4116915
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||    
T  4116798 aggcttaaatatgtttttcatccctgtaattataggccgtttgatttttcatccctgagcttactaatcctcccattttgcccctgtaaaagttaatcat 4116897  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  4116898 ttgaaaattcgtccctct 4116915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 4117648 - 4117531
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||    
T  4117648 aggcttaaatatgtttttcatccctgtaattataggccgtttgatttttcatccctgagcttactaatcctcccattttgcccctgtaaaagttaatcat 4117549  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  4117548 ttgaaaattcgtccctct 4117531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 33399966 - 33400082
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatc 145  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||  | |||||||     
T  33399966 ggcttaaatatgcttttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttgcccctgtaattactaatcatt 33400065  T
Q  146 taagatttcgtccctct 162  Q
    | | | |||||||||||    
T  33400066 tgaaagttcgtccctct 33400082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 33401228 - 33401128
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| | ||| |||||||||||| ||||||||||||||||||| |||||||    
T  33401228 taggcttaaatatgcttttcatccctgcaattataggccgtttgatttttcatccctgaacttactaatcctcccattttgcccctgtaaaagttaatca 33401129  T
Q  144 t 144  Q
    |    
T  33401128 t 33401128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 17784486 - 17784387
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||| |||||||||    
T  17784486 aggcttaaatatgcttttcatccctgcaatgataggccatttgatttttcatccatgaacttactaatcctcccattttgcccctgcaaatattaatcat 17784387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 14656479 - 14656596
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| ||||||||||| ||||||||||  ||||||||||||| | |||||||||||||||| | ||||||||||||||||| ||||||||    
T  14656479 aggcttaaatatgcttttcatccctgcaattataggctgtttgatttttcatccctgagcttactaatcctcctattttgcccctgtaaaagttaatcat 14656578  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  14656579 ttgaaagttcgtccctct 14656596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 14657310 - 14657193
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||| |||||||||| |||||||||||| |||||||||| || | ||| ||||||||||||||||||||||||||||||  | |||||||    
T  14657310 aggcttaaatatgcttttcatccctataattataggccgtttgattttttatccctgaccttactaatccttccattttgcccctgtaattactaatcat 14657211  T
Q  145 ctaagatttcgtccctct 162  Q
     | | | |||||||||||    
T  14657210 ttgaaagttcgtccctct 14657193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 1661527 - 1661414
Alignment:
Q  50 ttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcatctaa 148  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||||| |||||||||  | ||||||| | |    
T  1661527 ttaaatatgattttcatccctgtaattataggccgtttgatttttcatccctgaacttactaatccttccattttacccctgtaattactaatcatttga 1661428  T
Q  149 gatttcgtccctct 162  Q
     | |||||||||||    
T  1661427 aagttcgtccctct 1661414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 8427459 - 8427381
Alignment:
Q  53 aatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| | ||  |||||||||||| ||||||||||||||    
T  8427459 aatatgcatttcatccctgcaattataggtcatttgatttttcatccctggacttactaatcctcccattttgcccctg 8427381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 13480206 - 13480306
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||| || |||||||||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  13480206 taggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatca 13480305  T
Q  144 t 144  Q
    |    
T  13480306 t 13480306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 12080727 - 12080780
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||| ||||||||    
T  12080727 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaa 12080780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 21628050 - 21627997
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||| ||||||||||||||||||| | ||||||||||||||    
T  21628050 ttaatcatttaaaattttgtccctctccccacttaatcactgccacgtcactaa 21627997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 23291745 - 23291842
Alignment:
Q  48 gcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||  |||| |||||  || |||||||||||||| ||||||||  |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  23291745 gcttaaatatgtctttcgtccctacaaatataggccatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 23291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 33517625 - 33517678
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||| ||||||||||    
T  33517625 ttaatcatttaaaatttcgtccctctccccacttaatcactgctacgtcactaa 33517678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 5064333 - 5064433
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| ||||||||| |||| | ||||||| ||||| ||  |||  ||||||||||| ||| |||||||||| ||| ||||||||    
T  5064333 taggcttaaatatgtctttcgtccctgtaaatataagtcatttgaattttcgtccctgaagttactaatcctcccaatttgcccctgcaaatattaatca 5064432  T
Q  144 t 144  Q
    |    
T  5064433 t 5064433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 5064716 - 5064621
Alignment:
Q  50 ttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||  |||| || ||| || |||||||||||||| ||||| ||  |||| ||||||||||||||| | |||||||| ||| |||||||||    
T  5064716 ttaaatatgtctttcgtctctgcaaatataggccatttgaattttcgtccctgaggttactaatccttccaatctgcccctgcaaatattaatcat 5064621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 1215208 - 1215150
Alignment:
Q  132 aaaaattaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||| |||||||  ||| ||||||||||| |||||||||||| | ||||||||||||||    
T  1215208 aaaatttaatcacttaaaatttcgtccctatccccacttaatcactgccacgtcactaa 1215150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 28000691 - 28000645
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  28000691 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 28000645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 30337540 - 30337586
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  30337540 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 30337586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 3059348 - 3059401
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| ||||||||||||||| |||||||| | ||||| ||||||||    
T  3059348 ttaatcatttaaaatttcgtccctctcctcacttaatcactgccatgtcactaa 3059401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 30725850 - 30725903
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||| ||||| | ||||| ||||||||    
T  30725850 ttaatcatttaaaatttcgtccctctccccatttaatcactgccatgtcactaa 30725903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 30803952 - 30804005
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||  |||||||    
T  30803952 ttaatcatttaaaatttcgtccctctccccacttaatcactgccatctcactaa 30804005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 33647054 - 33647107
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||| ||||||||| ||||| | ||||||||||||||    
T  33647054 ttaatcatttaaaatttcgtctctctccccatttaatcactgccacgtcactaa 33647107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 13480594 - 13480494
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| ||| ||||| |||||| ||||||| ||||| | | |||  ||||||||||||||| | |||||||  ||| ||||||||    
T  13480594 taggcttaaatatgtctttcgtccttgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctacaaatattaatca 13480495  T
Q  144 t 144  Q
    |    
T  13480494 t 13480494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 30234978 - 30234878
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatca-tgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||  |||| |||||| || ||||||   ||||| ||||||||  |||  ||||||||||||||| | |||||||| ||| ||||||||    
T  30234978 taggcttaaatatgtctttcgtccctgcaaatataggttgtttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatca 30234879  T
Q  144 t 144  Q
    |    
T  30234878 t 30234878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 260999 - 261099
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||  ||||||||||| |||||||||||||| ||| ||||||||    
T  260999 taggcttaaatatgcatttcatccctgcaattataggtcatttgatttttcatccatgaatttactaatcctcccattttgcccctgcaaatattaatca 261098  T
Q  144 t 144  Q
    |    
T  261099 t 261099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 262542 - 262443
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||| ||||||| |||||| ||| |||||||||    
T  262542 aggcttaaatatgcatttcatccctgtaattataggtcatttgatttttcatccctgaacttactaatcctcccatttttcccctgcaaatattaatcat 262443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 73109 - 73196
Alignment:
Q  47 ggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaa 133  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||||| | |||||||||||||||| |||||||||||||||||    
T  73109 ggcttaaatatgcttttcatccctgtaattatgggccatttgacttttcatccctgagcttactaatcctcccattttgcccctgtaa 73196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 14479 - 14393
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctg 130  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||    
T  14479 taggcttaaatatgcttttcacccctgtaattataggccatttgatttttcatccctgagcttactaatcctcccattttacccctg 14393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 13133 - 13218
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcatc-atgagcttactaatccttccattttgcccctg 130  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||  |||| ||| ||||||| ||||||||||||||    
T  13133 aggcttaaatatgcttttcatccctgtaaatatagaccatttgatttttcatctctgagtttagtaatcctcccattttgcccctg 13218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 591 - 691
Alignment:
Q  45 taggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatca 143  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| | ||| ||||||||||||  ||||||||||||| ||| ||||||||    
T  591 taggcttaaatatgcatttcatcactgcaattataggtcatttgatttttcatccctgaacttactaatcctctcattttgcccctgcaaatattaatca 690  T
Q  144 t 144  Q
    |    
T  691 t 691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 978 - 879
Alignment:
Q  46 aggcttaaatatgcatttcatccctgtaattataggccatttgatttttcat-catgagcttactaatccttccattttgcccctgtaaaaattaatcat 144  Q
    |||||||||||||  |||| ||||||||| ||| |||||||||| ||||| | | |||  ||||||||||||||| | |||||||| ||| |||||||||    
T  978 aggcttaaatatgtctttcgtccctgtaaatattggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 69056 - 69109
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  69056 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 69109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 37900 - 37847
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacgtcactaa 190  Q
    |||||||| ||| |||||||||||||||||||||||| | ||||||||||||||    
T  37900 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaa 37847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 139762 - 139809
Alignment:
Q  136 attaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    ||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  139762 attaatcatttaaaatttcgtccctctccccacttaatcactgccacg 139809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 1324 - 1370
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  1324 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 141900 - 141854
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  141900 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 141854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 1860 - 1906
Alignment:
Q  137 ttaatcatctaagatttcgtccctctccccacttaattattgccacg 183  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||||    
T  1860 ttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 1906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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