View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19624_low_1 (Length: 299)
Name: NF19624_low_1
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19624_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 38081399 - 38081668
Alignment:
| Q |
20 |
ataacttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081399 |
ataacttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaa |
38081498 |
T |
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| Q |
120 |
atttacaactcaaaatctcagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatt |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081499 |
atttacaactcaaaatctaagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatt |
38081598 |
T |
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| Q |
220 |
tgttcccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgagggcctatcctatg |
289 |
Q |
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| T |
38081599 |
tgttcccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgagggcctatcctatg |
38081668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 38072314 - 38072572
Alignment:
| Q |
20 |
ataacttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaa |
119 |
Q |
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|||| |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||| |
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| T |
38072314 |
ataatttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaa |
38072413 |
T |
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| Q |
120 |
atttacaactcaaaatctcagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatt |
219 |
Q |
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| T |
38072414 |
attttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagccataatc |
38072513 |
T |
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| Q |
220 |
tgttcccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
278 |
Q |
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||||||||| | |||||| | || ||||||| |||||||| ||||| ||||| ||||| |
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| T |
38072514 |
tgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgaggg |
38072572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 38085823 - 38086082
Alignment:
| Q |
19 |
aataacttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactca |
118 |
Q |
| |
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|||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| | || ||| || || ||||| |
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| T |
38085823 |
aatagcttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactcc |
38085922 |
T |
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| Q |
119 |
aatttacaactcaaaatctcagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataat |
218 |
Q |
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||||| ||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| ||||||||||||| || || |||| |
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| T |
38085923 |
aattttcaactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaat |
38086022 |
T |
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| Q |
219 |
ttgttcccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
278 |
Q |
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|||||||||| | || |||| |||||||||| || || || || || ||||||||||| |
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| T |
38086023 |
ttgttcccaataccacagcctgcagattcgaattcgcagcggcggtcacgactttgaggg |
38086082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 38057991 - 38058244
Alignment:
| Q |
25 |
ttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaattta |
124 |
Q |
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|||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
38057991 |
ttccttgaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaattta |
38058090 |
T |
|
| Q |
125 |
caactcaaaatctcagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttc |
224 |
Q |
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|||||||||||||||||||||||||| ||| |||||| ||||| ||| |||| ||||||||| | | |||||| ||||||||| ||||||| ||||| |
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| T |
38058091 |
caactcaaaatctcagatttgcatccaacacaacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttc |
38058190 |
T |
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| Q |
225 |
ccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
278 |
Q |
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|||| || ||| |||||||||| ||| || || |||||||| |||||||| |
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| T |
38058191 |
acaaatccacaacctgcagattcgaatccgaagcggtggccatgattttgaggg |
38058244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 38062463 - 38062210
Alignment:
| Q |
25 |
ttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaattta |
124 |
Q |
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||||| |||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| || ||||| |||||| |
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| T |
38062463 |
ttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaattta |
38062364 |
T |
|
| Q |
125 |
caactcaaaatctcagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttc |
224 |
Q |
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| T |
38062363 |
ccactcaaaatctcagatttgcatccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttc |
38062264 |
T |
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| Q |
225 |
ccaaaatcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
278 |
Q |
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||||| |||| ||| |||||||||| ||| || || ||||| ||||| ||||| |
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| T |
38062263 |
ccaaagacatgacctgcagattcgaatccgaagcggcggccacgacttcgaggg |
38062210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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