View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19624_low_11 (Length: 233)
Name: NF19624_low_11
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19624_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8458095 - 8458327
Alignment:
| Q |
1 |
cttacccttttttgctagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgtt |
100 |
Q |
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| T |
8458095 |
cttacccttttttgctagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgtt |
8458194 |
T |
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| Q |
101 |
accattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagt |
200 |
Q |
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| T |
8458195 |
accattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagt |
8458294 |
T |
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| Q |
201 |
cacatttgtagataatcatgatactggctcaac |
233 |
Q |
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| T |
8458295 |
cacatttgtagataatcatgatactggctcaac |
8458327 |
T |
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Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 25802704 - 25802572
Alignment:
| Q |
75 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
173 |
Q |
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| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
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| Q |
174 |
gattggatggtggccttcaagatcagtcacatt |
206 |
Q |
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| T |
25802604 |
gattggatggtggccttcaagatcagtcacatt |
25802572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 6827279 - 6827150
Alignment:
| Q |
70 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
168 |
Q |
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| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
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| Q |
169 |
ggtgtgattggatggtggccttcaagatca |
198 |
Q |
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| T |
6827179 |
ggtgtgattggatggtggccttcaagatca |
6827150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 9822865 - 9822994
Alignment:
| Q |
70 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
168 |
Q |
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| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
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| Q |
169 |
ggtgtgattggatggtggccttcaagatca |
198 |
Q |
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| T |
9822965 |
ggtgtgattggatggtggccttcaagatca |
9822994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
82 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
180 |
Q |
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| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
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| Q |
181 |
tggtggccttcaagatcag |
199 |
Q |
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| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
119 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
198 |
Q |
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| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
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