View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19624_low_12 (Length: 227)

Name: NF19624_low_12
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19624_low_12
NF19624_low_12
[»] chr6 (3 HSPs)
chr6 (7-74)||(6405647-6405714)
chr6 (170-227)||(14796235-14796292)
chr6 (9-74)||(6590258-6590323)
[»] chr3 (1 HSPs)
chr3 (180-208)||(8587076-8587104)
[»] chr2 (1 HSPs)
chr2 (180-208)||(30404905-30404933)


Alignment Details
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 6405647 - 6405714
Alignment:
Q  7 accagaacttcgatgatagaaacataatgactttgggtcctattcatatacacctaaactaaatgtgt 74  Q
    |||| |||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  6405647 accataacttcgatgatggaaacataatgactttggatcctattcgtatatacctaaactaattgtgt 6405714  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 14796235 - 14796292
Alignment:
Q  170 attaacggtggtgtcggcgtgtcagtgtccgtgtcatgtgtaaccctatacccttaaa 227  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  14796235 attaacggttgtgtcggcatgtcagtgtccgtgtcatgtgtaaccctaaacctttaaa 14796292  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 6590323 - 6590258
Alignment:
Q  9 cagaacttcgatgatagaaacataatgactttgggtcctattcatatacacctaaactaaatgtgt 74  Q
    ||||||||||||||| ||||||||||||||| || || |||||||||| ||||| | |||||||||    
T  6590323 cagaacttcgatgatggaaacataatgacttaggatcttattcatatatacctagattaaatgtgt 6590258  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 8587076 - 8587104
Alignment:
Q  180 gtgtcggcgtgtcagtgtccgtgtcatgt 208  Q
    |||||||||||||||||||||||||||||    
T  8587076 gtgtcggcgtgtcagtgtccgtgtcatgt 8587104  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 30404905 - 30404933
Alignment:
Q  180 gtgtcggcgtgtcagtgtccgtgtcatgt 208  Q
    |||||||||||||||||||||||||||||    
T  30404905 gtgtcggcgtgtcagtgtccgtgtcatgt 30404933  T

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