View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19624_low_8 (Length: 248)
Name: NF19624_low_8
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19624_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 44882140 - 44881975
Alignment:
| Q |
9 |
attatactctcttttggatgtttaaatttacttatttttattctataatcgtgaatcgacatcagactggatgagtatggttttaatcttttatccgtgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44882140 |
attatactctcttttggatgtttaaatttacttatttttattctataatcgtgaatcgacat---------tgagtatggttttaatcttttatccgtgc |
44882050 |
T |
|
| Q |
109 |
tttgagttcttttttcaaaaccttaaacgaaaaagaaaaccacaacaatccttgatctatagccacagagtacac |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44882049 |
tttgagttcttttttcaaaaccttaaacgataaagaaaaccacaacaatccttgatctatagccacagagtacac |
44881975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University