View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19624_low_9 (Length: 244)
Name: NF19624_low_9
Description: NF19624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19624_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2149649 - 2149421
Alignment:
| Q |
1 |
aattcaatgtatcaaattgtataaaatgagactaaacatcaaacacgaacaactctatacgaacattttttccccataggttatctcttttggagctagt |
100 |
Q |
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| T |
2149649 |
aattcaatgtatcaaattgtataaaatgagactaaacatcaaacacgaacaactctatacgaaccttttttccccataggttatctcttttggagctagt |
2149550 |
T |
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| Q |
101 |
ttatggagcactgtgagacaccattgttaagagtcctcacaccatttttacggattccagtactgcctgataggctttgcgcatggagccatacggaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2149549 |
ttatggagcactgtgagacaccattgttaagagtcctcacaccatttttacggattccagtactgcctgataggctttgcgcatggagccatacggaagg |
2149450 |
T |
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| Q |
201 |
cgtacaactgtctcatgtacaaggaaact |
229 |
Q |
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| T |
2149449 |
cgtacaactgtctcatgtacaaggaaact |
2149421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 2144420 - 2144220
Alignment:
| Q |
29 |
agactaaacatcaaacacgaacaactctatacgaacattttttccccataggttatctcttttggagctagtt---tatggagcactgtgagacaccatt |
125 |
Q |
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||||||||||||||| |||||||||| ||||| ||| |||| ||| |||||| ||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
2144420 |
agactaaacatcaaatacgaacaactatatacaaactttttctccatataggtcatctcttttggagctagttctatctagagcactgtgagacaccatt |
2144321 |
T |
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| Q |
126 |
gttaagagtcctcacaccatttttacggattccagtactgcctgataggctttgcgcatggagccatacggaaggcgtacaactgtctcatgtacaagga |
225 |
Q |
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| T |
2144320 |
gttaagagtct---caccatttttacagatttcggtactgcctgataggctttgcgcatggagccataaggaagacgcacaagtgtctcgggtgcaagga |
2144224 |
T |
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| Q |
226 |
aact |
229 |
Q |
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|||| |
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| T |
2144223 |
aact |
2144220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2145175 - 2145147
Alignment:
| Q |
1 |
aattcaatgtatcaaattgtataaaatga |
29 |
Q |
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| T |
2145175 |
aattcaatgtatcaaattgtataaaatga |
2145147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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